Wall clock time and date at job start Tue Mar 31 2020 16:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21254 * 119.99910 * 2 1 4 4 C 1.47169 * 119.99709 * 180.02562 * 2 1 3 5 5 C 1.39875 * 120.18404 * 359.97438 * 4 2 1 6 6 C 1.37841 * 119.82587 * 179.97438 * 5 4 2 7 7 C 1.38406 * 120.25796 * 359.97438 * 6 5 4 8 8 C 1.38654 * 120.24723 * 0.02562 * 7 6 5 9 9 C 1.37852 * 120.13943 * 359.97438 * 8 7 6 10 10 C 1.51212 * 108.23226 * 180.02562 * 8 7 6 11 11 N 1.48040 * 105.67749 * 342.46349 * 10 8 7 12 12 C 1.46896 * 110.99769 * 147.06168 * 11 10 8 13 13 H 1.09003 * 109.47160 * 53.63605 * 12 11 10 14 14 C 1.52996 * 109.47624 * 293.63359 * 12 11 10 15 15 C 1.50700 * 109.46792 * 173.63256 * 12 11 10 16 16 O 1.21277 * 120.00028 * 24.86670 * 15 12 11 17 17 N 1.34776 * 119.99697 * 204.86126 * 15 12 11 18 18 C 1.46497 * 120.00367 * 355.19532 * 17 15 12 19 19 C 1.46504 * 119.99803 * 175.19383 * 17 15 12 20 20 C 1.50705 * 109.46856 * 90.00114 * 19 17 15 21 21 H 1.07999 * 120.00490 * 0.02562 * 20 19 17 22 22 C 1.37881 * 119.99843 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99990 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46737 * 60.00505 * 24 22 20 26 26 H 1.48502 * 109.47051 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47351 * 300.00329 * 24 22 20 28 28 C 1.48038 * 103.91205 * 27.68750 * 11 10 8 29 29 H 1.09002 * 109.46593 * 269.99753 * 1 2 3 30 30 H 1.08997 * 109.47098 * 29.99962 * 1 2 3 31 31 H 1.09001 * 109.47129 * 150.00108 * 1 2 3 32 32 H 1.07996 * 120.08786 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.87472 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.05587 * 179.97438 * 9 8 7 35 35 H 1.09003 * 110.20664 * 223.41293 * 10 8 7 36 36 H 1.09005 * 110.27307 * 101.55431 * 10 8 7 37 37 H 1.09004 * 109.47079 * 51.39364 * 14 12 11 38 38 H 1.08997 * 109.47462 * 171.39548 * 14 12 11 39 39 H 1.09003 * 109.47250 * 291.39527 * 14 12 11 40 40 H 1.09003 * 109.47172 * 93.55307 * 18 17 15 41 41 H 1.09003 * 109.47397 * 213.55028 * 18 17 15 42 42 H 1.08994 * 109.47251 * 333.54893 * 18 17 15 43 43 H 1.09004 * 109.47157 * 209.99929 * 19 17 15 44 44 H 1.08995 * 109.47248 * 330.00566 * 19 17 15 45 45 H 0.96997 * 120.00008 * 179.97438 * 23 22 20 46 46 H 1.08995 * 110.20624 * 91.35473 * 28 11 10 47 47 H 1.08999 * 110.20243 * 213.24861 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2746 -0.0006 5 6 1.5473 -2.4881 -0.0006 6 6 2.2439 -3.6776 -0.0016 7 6 3.6280 -3.6752 -0.0032 8 6 4.3244 -2.4762 -0.0033 9 6 3.6411 -1.2789 -0.0022 10 6 5.8039 -2.7885 -0.0058 11 7 5.9153 -4.2013 0.4222 12 6 7.0528 -4.8614 -0.2322 13 1 7.9581 -4.2787 -0.0619 14 6 6.7874 -4.9637 -1.7355 15 6 7.2295 -6.2435 0.3419 16 8 6.2860 -6.8171 0.8434 17 7 8.4362 -6.8422 0.2977 18 6 9.5498 -6.1954 -0.4005 19 6 8.6342 -8.1400 0.9481 20 6 8.3310 -9.2443 -0.0315 21 1 8.0222 -9.0036 -1.0380 22 6 8.4490 -10.5620 0.3568 23 7 8.8255 -10.8551 1.5823 24 14 8.0724 -11.9308 -0.8572 25 1 8.9808 -11.8188 -2.0267 26 1 8.2745 -13.2463 -0.1984 27 1 6.6636 -11.8155 -1.3119 28 6 4.6334 -4.8051 -0.0061 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4674 -2.4932 0.0003 33 1 1.7076 -4.6150 -0.0012 34 1 4.1849 -0.3459 -0.0018 35 1 6.3268 -2.1398 0.6970 36 1 6.2142 -2.6652 -1.0082 37 1 6.5091 -3.9835 -2.1228 38 1 7.6883 -5.3116 -2.2407 39 1 5.9755 -5.6687 -1.9140 40 1 10.1319 -5.6079 0.3096 41 1 10.1873 -6.9562 -0.8511 42 1 9.1591 -5.5409 -1.1796 43 1 9.6682 -8.2248 1.2826 44 1 7.9669 -8.2220 1.8060 45 1 8.9081 -11.7821 1.8556 46 1 4.7296 -5.2209 -1.0091 47 1 4.3295 -5.5812 0.6963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411927000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:08 Heat of formation + Delta-G solvation = -14.985139 kcal Electronic energy + Delta-G solvation = -27922.266112 eV Core-core repulsion = 24071.044536 eV Total energy + Delta-G solvation = -3851.221576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.01521 -39.78413 -38.78748 -36.84813 -34.79779 -33.18842 -32.45719 -31.74731 -30.80769 -28.82714 -27.84275 -27.69705 -26.08930 -25.11184 -23.51081 -22.76983 -21.87406 -20.87224 -19.65985 -18.33834 -17.09590 -16.77848 -16.52645 -16.24248 -16.06872 -15.41763 -15.30011 -14.99985 -14.89495 -14.52546 -14.15898 -14.03853 -13.86376 -13.64291 -13.35623 -13.24162 -12.98254 -12.59157 -12.48215 -12.30265 -12.20126 -12.07734 -12.02006 -11.76008 -11.66495 -11.52599 -11.29465 -11.16250 -11.06175 -10.89215 -10.57281 -10.16154 -10.08234 -9.65575 -9.26457 -9.12705 -8.84594 -8.44309 -8.18586 -7.64907 -6.04939 -4.09732 0.38105 1.09787 2.11040 3.28615 3.30390 3.34942 3.37325 3.48125 3.59705 3.72843 4.12901 4.31229 4.36499 4.43706 4.63781 4.69069 4.82507 4.89104 4.98598 5.01561 5.07485 5.10247 5.16999 5.27450 5.29914 5.30645 5.40284 5.49066 5.56310 5.61360 5.63352 5.73851 5.76687 5.90766 5.97174 6.00825 6.07987 6.10700 6.21619 6.34790 6.60460 6.71645 6.79965 7.07545 7.20413 7.43396 7.52917 7.91023 8.22392 8.40172 8.89059 9.08410 9.55063 11.03069 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.002394 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.963938 B =11692.538778 C =12344.743164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.463 6.463 4 C -0.181 4.181 5 C -0.069 4.069 6 C -0.116 4.116 7 C -0.056 4.056 8 C -0.117 4.117 9 C -0.040 4.040 10 C 0.071 3.929 11 N -0.479 5.479 12 C 0.050 3.950 13 H 0.104 0.896 14 C -0.186 4.186 15 C 0.517 3.483 16 O -0.527 6.527 17 N -0.602 5.602 18 C 0.079 3.921 19 C 0.248 3.752 20 C -0.525 4.525 21 H 0.056 0.944 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 C 0.065 3.935 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.032 0.968 44 H 0.043 0.957 45 H 0.264 0.736 46 H 0.078 0.922 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 19.672 -6.225 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.277 3.723 3 O -0.339 6.339 4 C -0.182 4.182 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.056 4.056 8 C -0.118 4.118 9 C -0.059 4.059 10 C -0.057 4.057 11 N -0.201 5.201 12 C -0.062 4.062 13 H 0.122 0.878 14 C -0.245 4.245 15 C 0.302 3.698 16 O -0.403 6.403 17 N -0.334 5.334 18 C -0.065 4.065 19 C 0.129 3.871 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.062 4.062 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.188 19.662 -5.226 23.218 hybrid contribution -0.159 -0.907 -1.532 1.787 sum -11.347 18.755 -6.758 22.939 Atomic orbital electron populations 1.22237 0.93743 1.04907 1.04850 1.22469 0.91634 0.87502 0.70677 1.90535 1.72174 1.34373 1.36838 1.20334 0.94098 0.94792 1.08983 1.21360 0.99930 0.91096 0.96308 1.20517 0.92523 0.98599 1.01827 1.21181 0.94180 0.96022 0.94263 1.20538 0.96117 0.93305 1.01790 1.20642 0.92782 0.97373 0.95106 1.21740 0.91947 0.91355 1.00630 1.65302 1.01663 1.00724 1.52457 1.21974 0.95601 0.95770 0.92883 0.87831 1.22460 1.03884 1.02611 0.95506 1.19856 0.83451 0.86192 0.80316 1.90641 1.39023 1.65478 1.45158 1.48100 1.08908 1.22593 1.53828 1.21729 0.90588 0.98055 0.96154 1.19273 0.97321 0.76996 0.93541 1.21370 1.46105 0.90757 0.98138 0.92614 1.24938 0.95156 0.98677 0.95368 1.69919 1.47274 1.19083 1.17076 0.86570 0.78924 0.80969 0.81006 1.20304 1.21173 1.20223 1.22003 0.86645 0.95300 1.02252 0.88374 0.89439 0.89447 0.84687 0.85037 0.85036 0.88826 0.91428 0.91573 0.90598 0.90983 0.93630 0.90759 0.92332 0.94987 0.93904 0.92657 0.90440 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 9.75 36.01 0.35 -0.73 16 2 C 0.40 3.77 7.23 -30.68 -0.22 3.55 16 3 O -0.46 -5.94 17.09 5.58 0.10 -5.84 16 4 C -0.18 -1.81 5.87 -105.06 -0.62 -2.43 16 5 C -0.07 -0.59 9.36 -39.11 -0.37 -0.95 16 6 C -0.12 -1.18 10.02 -39.66 -0.40 -1.58 16 7 C -0.06 -0.69 6.27 -104.14 -0.65 -1.34 16 8 C -0.12 -1.38 6.25 -104.36 -0.65 -2.03 16 9 C -0.04 -0.45 9.59 -39.13 -0.38 -0.82 16 10 C 0.07 0.81 6.38 -4.10 -0.03 0.78 16 11 N -0.48 -6.97 5.33 -228.29 -1.22 -8.19 16 12 C 0.05 0.73 1.88 -68.87 -0.13 0.60 16 13 H 0.10 1.29 7.07 -51.93 -0.37 0.93 16 14 C -0.19 -2.28 8.05 37.16 0.30 -1.98 16 15 C 0.52 10.42 6.82 -10.99 -0.07 10.35 16 16 O -0.53 -12.81 14.26 5.56 0.08 -12.73 16 17 N -0.60 -12.47 2.86 -182.95 -0.52 -12.99 16 18 C 0.08 1.20 9.89 59.85 0.59 1.79 16 19 C 0.25 6.42 5.14 -5.19 -0.03 6.39 16 20 C -0.52 -14.69 9.39 -34.44 -0.32 -15.01 16 21 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 24 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 28 C 0.06 0.93 5.25 -4.08 -0.02 0.91 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.31 6.47 -51.93 -0.34 -0.03 16 32 H 0.14 0.70 6.36 -52.49 -0.33 0.37 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.39 7.65 -52.49 -0.40 0.99 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.67 5.89 -51.93 -0.31 0.36 16 37 H 0.07 0.66 6.12 -51.93 -0.32 0.34 16 38 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 39 H 0.07 0.99 6.20 -51.93 -0.32 0.67 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 42 H 0.06 0.71 4.85 -51.93 -0.25 0.46 16 43 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 44 H 0.04 1.26 7.49 -51.93 -0.39 0.87 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 1.09 5.06 -51.93 -0.26 0.83 16 47 H 0.11 1.92 7.15 -51.93 -0.37 1.55 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -34.74 375.95 -9.42 -44.16 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.49 Total: -0.12 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.74 Total: -0.87 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.00 Total: -46.90 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.17 Total: -18.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.74 -9.42 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411927000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.171 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds