Wall clock time and date at job start Tue Mar 31 2020 16:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21254 * 119.99910 * 2 1 4 4 C 1.47169 * 119.99709 * 180.02562 * 2 1 3 5 5 C 1.39875 * 120.18404 * 359.97438 * 4 2 1 6 6 C 1.37841 * 119.82587 * 179.97438 * 5 4 2 7 7 C 1.38406 * 120.25796 * 359.97438 * 6 5 4 8 8 C 1.38654 * 120.24723 * 0.02562 * 7 6 5 9 9 C 1.37852 * 120.13943 * 359.97438 * 8 7 6 10 10 C 1.51212 * 108.23226 * 180.02562 * 8 7 6 11 11 N 1.48040 * 105.67749 * 342.46349 * 10 8 7 12 12 C 1.46896 * 110.99769 * 147.06168 * 11 10 8 13 13 H 1.09003 * 109.47160 * 53.63605 * 12 11 10 14 14 C 1.52996 * 109.47624 * 293.63359 * 12 11 10 15 15 C 1.50700 * 109.46792 * 173.63256 * 12 11 10 16 16 O 1.21277 * 120.00028 * 24.86670 * 15 12 11 17 17 N 1.34776 * 119.99697 * 204.86126 * 15 12 11 18 18 C 1.46497 * 120.00367 * 355.19532 * 17 15 12 19 19 C 1.46504 * 119.99803 * 175.19383 * 17 15 12 20 20 C 1.50705 * 109.46856 * 90.00114 * 19 17 15 21 21 H 1.07999 * 120.00490 * 0.02562 * 20 19 17 22 22 C 1.37881 * 119.99843 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99990 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46737 * 60.00505 * 24 22 20 26 26 H 1.48502 * 109.47051 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47351 * 300.00329 * 24 22 20 28 28 C 1.48038 * 103.91205 * 27.68750 * 11 10 8 29 29 H 1.09002 * 109.46593 * 269.99753 * 1 2 3 30 30 H 1.08997 * 109.47098 * 29.99962 * 1 2 3 31 31 H 1.09001 * 109.47129 * 150.00108 * 1 2 3 32 32 H 1.07996 * 120.08786 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.87472 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.05587 * 179.97438 * 9 8 7 35 35 H 1.09003 * 110.20664 * 223.41293 * 10 8 7 36 36 H 1.09005 * 110.27307 * 101.55431 * 10 8 7 37 37 H 1.09004 * 109.47079 * 51.39364 * 14 12 11 38 38 H 1.08997 * 109.47462 * 171.39548 * 14 12 11 39 39 H 1.09003 * 109.47250 * 291.39527 * 14 12 11 40 40 H 1.09003 * 109.47172 * 93.55307 * 18 17 15 41 41 H 1.09003 * 109.47397 * 213.55028 * 18 17 15 42 42 H 1.08994 * 109.47251 * 333.54893 * 18 17 15 43 43 H 1.09004 * 109.47157 * 209.99929 * 19 17 15 44 44 H 1.08995 * 109.47248 * 330.00566 * 19 17 15 45 45 H 0.96997 * 120.00008 * 179.97438 * 23 22 20 46 46 H 1.08995 * 110.20624 * 91.35473 * 28 11 10 47 47 H 1.08999 * 110.20243 * 213.24861 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2746 -0.0006 5 6 1.5473 -2.4881 -0.0006 6 6 2.2439 -3.6776 -0.0016 7 6 3.6280 -3.6752 -0.0032 8 6 4.3244 -2.4762 -0.0033 9 6 3.6411 -1.2789 -0.0022 10 6 5.8039 -2.7885 -0.0058 11 7 5.9153 -4.2013 0.4222 12 6 7.0528 -4.8614 -0.2322 13 1 7.9581 -4.2787 -0.0619 14 6 6.7874 -4.9637 -1.7355 15 6 7.2295 -6.2435 0.3419 16 8 6.2860 -6.8171 0.8434 17 7 8.4362 -6.8422 0.2977 18 6 9.5498 -6.1954 -0.4005 19 6 8.6342 -8.1400 0.9481 20 6 8.3310 -9.2443 -0.0315 21 1 8.0222 -9.0036 -1.0380 22 6 8.4490 -10.5620 0.3568 23 7 8.8255 -10.8551 1.5823 24 14 8.0724 -11.9308 -0.8572 25 1 8.9808 -11.8188 -2.0267 26 1 8.2745 -13.2463 -0.1984 27 1 6.6636 -11.8155 -1.3119 28 6 4.6334 -4.8051 -0.0061 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4674 -2.4932 0.0003 33 1 1.7076 -4.6150 -0.0012 34 1 4.1849 -0.3459 -0.0018 35 1 6.3268 -2.1398 0.6970 36 1 6.2142 -2.6652 -1.0082 37 1 6.5091 -3.9835 -2.1228 38 1 7.6883 -5.3116 -2.2407 39 1 5.9755 -5.6687 -1.9140 40 1 10.1319 -5.6079 0.3096 41 1 10.1873 -6.9562 -0.8511 42 1 9.1591 -5.5409 -1.1796 43 1 9.6682 -8.2248 1.2826 44 1 7.9669 -8.2220 1.8060 45 1 8.9081 -11.7821 1.8556 46 1 4.7296 -5.2209 -1.0091 47 1 4.3295 -5.5812 0.6963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411927000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:07 Heat of formation + Delta-G solvation = -38.642769 kcal Electronic energy + Delta-G solvation = -27923.291984 eV Core-core repulsion = 24071.044536 eV Total energy + Delta-G solvation = -3852.247448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.00296 -40.84452 -39.95485 -37.90745 -36.52723 -34.83507 -33.88203 -32.57768 -31.60586 -29.96070 -29.30815 -28.72906 -27.47898 -26.34958 -25.09382 -23.68693 -22.96459 -22.04292 -20.43285 -19.80262 -18.66415 -18.10834 -17.84576 -17.42006 -16.95523 -16.81912 -16.36823 -16.15922 -16.01201 -15.77740 -15.63577 -14.97945 -14.84525 -14.64103 -14.44642 -14.27554 -14.21869 -13.86213 -13.55314 -13.50006 -13.34164 -13.19223 -13.03359 -12.94758 -12.90473 -12.73266 -12.68040 -12.58556 -12.42158 -12.36022 -12.15784 -11.86265 -11.71830 -10.82394 -10.64039 -10.50795 -10.08371 -9.93742 -9.39807 -9.20882 -8.21539 -6.36354 -0.41545 0.31017 1.35795 1.36124 1.40286 1.47657 1.80843 2.19550 2.41213 2.69791 2.95580 2.99332 3.07667 3.40776 3.45338 3.65836 3.90976 3.92824 4.01333 4.06514 4.22063 4.25560 4.31277 4.37056 4.38941 4.47704 4.60444 4.66916 4.68733 4.72416 4.74147 4.81379 4.90542 4.92695 4.99387 5.01737 5.10195 5.15944 5.22482 5.23525 5.35642 5.42413 5.56559 5.70665 5.76960 5.81423 5.88459 6.06711 6.51381 6.70650 6.80406 7.29162 7.50662 8.85232 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.002394 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.963938 B =11692.538778 C =12344.743164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.400 3.600 3 O -0.504 6.504 4 C -0.188 4.188 5 C -0.053 4.053 6 C -0.122 4.122 7 C -0.077 4.077 8 C -0.124 4.124 9 C -0.052 4.052 10 C 0.074 3.926 11 N -0.503 5.503 12 C 0.064 3.936 13 H 0.133 0.867 14 C -0.179 4.179 15 C 0.506 3.494 16 O -0.581 6.581 17 N -0.610 5.610 18 C 0.073 3.927 19 C 0.262 3.738 20 C -0.538 4.538 21 H 0.053 0.947 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.279 1.279 27 H -0.278 1.278 28 C 0.071 3.929 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.023 0.977 44 H -0.006 1.006 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.284 21.297 -8.389 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.281 3.719 3 O -0.383 6.383 4 C -0.189 4.189 5 C -0.070 4.070 6 C -0.140 4.140 7 C -0.078 4.078 8 C -0.124 4.124 9 C -0.071 4.071 10 C -0.052 4.052 11 N -0.227 5.227 12 C -0.048 4.048 13 H 0.151 0.849 14 C -0.238 4.238 15 C 0.293 3.707 16 O -0.461 6.461 17 N -0.342 5.342 18 C -0.069 4.069 19 C 0.141 3.859 20 C -0.577 4.577 21 H 0.072 0.928 22 C -0.193 4.193 23 N -0.569 5.569 24 Si 0.791 3.209 25 H -0.184 1.184 26 H -0.204 1.204 27 H -0.203 1.203 28 C -0.056 4.056 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.194 0.806 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.041 0.959 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.265 21.323 -7.419 25.693 hybrid contribution 0.143 -1.373 -0.785 1.588 sum -12.121 19.950 -8.203 24.743 Atomic orbital electron populations 1.22288 0.90147 1.06421 1.06335 1.23040 0.93484 0.86412 0.68940 1.90529 1.73341 1.35524 1.38956 1.20640 0.93910 0.95920 1.08425 1.21729 1.01777 0.89554 0.93986 1.20815 0.91860 1.00058 1.01306 1.21145 0.95011 0.95245 0.96371 1.20563 0.96268 0.93282 1.02334 1.20760 0.93671 0.97038 0.95594 1.21785 0.92219 0.89219 1.01996 1.65180 1.01544 1.02425 1.53516 1.21870 0.96985 0.92088 0.93834 0.84947 1.22433 1.03820 1.03890 0.93611 1.20958 0.82290 0.88122 0.79289 1.90614 1.40745 1.67294 1.47401 1.48123 1.10932 1.21204 1.53948 1.22029 0.89209 0.98311 0.97335 1.18716 0.95234 0.79752 0.92224 1.21643 1.46044 0.91763 0.98258 0.92838 1.25878 0.94807 1.01386 0.97263 1.70048 1.48130 1.19761 1.18971 0.85476 0.78719 0.77673 0.78994 1.18407 1.20449 1.20323 1.21751 0.87637 0.95303 1.00934 0.86628 0.88988 0.86921 0.80649 0.83710 0.85061 0.87896 0.89245 0.88571 0.89305 0.92974 0.91220 0.91441 0.88538 0.95907 0.98769 0.92447 0.90646 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.42 9.75 71.24 0.69 -0.72 16 2 C 0.40 6.74 7.23 28.04 0.20 6.94 16 3 O -0.50 -12.49 17.09 -2.95 -0.05 -12.54 16 4 C -0.19 -3.38 5.87 -20.15 -0.12 -3.50 16 5 C -0.05 -0.75 9.36 22.57 0.21 -0.54 16 6 C -0.12 -2.31 10.02 22.22 0.22 -2.09 16 7 C -0.08 -1.88 6.27 -19.55 -0.12 -2.00 16 8 C -0.12 -2.81 6.25 -19.69 -0.12 -2.94 16 9 C -0.05 -1.10 9.59 22.56 0.22 -0.88 16 10 C 0.07 1.59 6.38 85.50 0.55 2.13 16 11 N -0.50 -14.59 5.33 -876.17 -4.67 -19.27 16 12 C 0.06 1.80 1.88 44.17 0.08 1.88 16 13 H 0.13 2.92 7.07 -2.39 -0.02 2.91 16 14 C -0.18 -4.01 8.05 71.98 0.58 -3.44 16 15 C 0.51 20.95 6.82 87.66 0.60 21.54 16 16 O -0.58 -30.08 14.26 -3.02 -0.04 -30.12 16 17 N -0.61 -25.76 2.86 -851.13 -2.43 -28.19 16 18 C 0.07 2.11 9.89 127.77 1.26 3.38 16 19 C 0.26 14.26 5.14 85.63 0.44 14.70 16 20 C -0.54 -31.03 9.39 25.60 0.24 -30.79 16 21 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 22 C 0.01 0.32 5.46 84.66 0.46 0.78 16 23 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 24 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 28 C 0.07 2.12 5.25 85.51 0.45 2.57 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.25 6.47 -2.39 -0.02 0.23 16 32 H 0.18 0.98 6.36 -2.91 -0.02 0.97 16 33 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.13 2.71 7.65 -2.91 -0.02 2.69 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 1.49 5.89 -2.38 -0.01 1.48 16 37 H 0.10 1.60 6.12 -2.38 -0.01 1.58 16 38 H 0.09 1.75 6.44 -2.39 -0.02 1.74 16 39 H 0.05 1.40 6.20 -2.39 -0.01 1.39 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 42 H 0.10 2.03 4.85 -2.39 -0.01 2.02 16 43 H 0.02 1.26 8.07 -2.38 -0.02 1.24 16 44 H -0.01 -0.37 7.49 -2.39 -0.02 -0.39 16 45 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.08 2.20 5.06 -2.39 -0.01 2.19 16 47 H 0.07 2.73 7.15 -2.39 -0.02 2.71 16 Total: -1.00 -81.71 375.95 1.95 -79.76 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.00 Total: 12.78 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.84 Total: 7.03 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -6.82 Total: -103.78 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -0.09 Total: -42.67 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -81.71 1.95 -79.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411927000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.115 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds