Wall clock time and date at job start Tue Mar 31 2020 16:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21253 * 120.00595 * 2 1 4 4 C 1.47175 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.39872 * 120.18173 * 0.02562 * 4 2 1 6 6 C 1.37843 * 119.82233 * 180.02562 * 5 4 2 7 7 C 1.38398 * 120.26382 * 0.02562 * 6 5 4 8 8 C 1.38854 * 120.21375 * 359.97228 * 7 6 5 9 9 C 1.37693 * 120.11254 * 0.04229 * 8 7 6 10 10 C 1.51220 * 108.12332 * 179.97438 * 8 7 6 11 11 N 1.48034 * 105.74697 * 17.57571 * 10 8 7 12 12 C 1.46899 * 111.00145 * 212.89083 * 11 10 8 13 13 H 1.09004 * 109.46866 * 52.02200 * 12 11 10 14 14 C 1.53002 * 109.47216 * 172.01626 * 12 11 10 15 15 C 1.50696 * 109.47204 * 292.01813 * 12 11 10 16 16 O 1.21284 * 119.99981 * 0.02562 * 15 12 11 17 17 N 1.34784 * 119.99886 * 179.97438 * 15 12 11 18 18 C 1.46503 * 119.99797 * 359.97438 * 17 15 12 19 19 C 1.46500 * 119.99724 * 180.02562 * 17 15 12 20 20 C 1.50702 * 109.47041 * 90.00225 * 19 17 15 21 21 H 1.08004 * 119.99976 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99647 * 179.97438 * 20 19 17 23 23 N 1.31515 * 120.00590 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99772 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47162 * 120.00152 * 24 22 20 27 27 H 1.48496 * 109.47171 * 239.99980 * 24 22 20 28 28 C 1.48027 * 103.91762 * 332.27528 * 11 10 8 29 29 H 1.09000 * 109.47380 * 240.00295 * 1 2 3 30 30 H 1.09002 * 109.46665 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46895 * 120.00122 * 1 2 3 32 32 H 1.07997 * 120.08473 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.86895 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.99700 * 180.02562 * 9 8 7 35 35 H 1.08999 * 110.20438 * 258.48135 * 10 8 7 36 36 H 1.09004 * 110.20284 * 136.67085 * 10 8 7 37 37 H 1.08993 * 109.47464 * 187.04881 * 14 12 11 38 38 H 1.08997 * 109.47010 * 307.05570 * 14 12 11 39 39 H 1.09003 * 109.46751 * 67.05008 * 14 12 11 40 40 H 1.09001 * 109.46332 * 90.00451 * 18 17 15 41 41 H 1.08997 * 109.47042 * 209.99913 * 18 17 15 42 42 H 1.08995 * 109.47182 * 330.00550 * 18 17 15 43 43 H 1.09000 * 109.46389 * 209.99812 * 19 17 15 44 44 H 1.08995 * 109.47299 * 330.00058 * 19 17 15 45 45 H 0.97000 * 120.00540 * 179.97438 * 23 22 20 46 46 H 1.08996 * 110.21116 * 146.74603 * 28 11 10 47 47 H 1.09003 * 110.20648 * 268.63855 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0500 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 1.5473 -2.4881 0.0006 6 6 2.2439 -3.6776 0.0016 7 6 3.6279 -3.6753 0.0032 8 6 4.3247 -2.4742 0.0032 9 6 3.6411 -1.2790 0.0025 10 6 5.8038 -2.7886 0.0058 11 7 5.9151 -4.2011 -0.4230 12 6 7.0528 -4.8616 0.2307 13 1 6.9898 -4.7114 1.3085 14 6 7.0191 -6.3597 -0.0782 15 6 8.3401 -4.2714 -0.2844 16 8 8.3126 -3.3871 -1.1140 17 7 9.5221 -4.7254 0.1777 18 6 9.5552 -5.7924 1.1811 19 6 10.7735 -4.1512 -0.3227 20 6 11.1710 -2.9825 0.5418 21 1 10.5529 -2.6959 1.3799 22 6 12.3236 -2.2792 0.2628 23 7 13.0764 -2.6285 -0.7574 24 14 12.8159 -0.8301 1.3339 25 1 11.8082 -0.6441 2.4087 26 1 14.1449 -1.0931 1.9422 27 1 12.8863 0.3984 0.5028 28 6 4.6334 -4.8052 0.0051 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 0.4673 -2.4931 0.0006 33 1 1.7076 -4.6150 0.0021 34 1 4.1849 -0.3459 0.0020 35 1 6.2130 -2.6661 1.0086 36 1 6.3278 -2.1396 -0.6959 37 1 7.7863 -6.8685 0.5054 38 1 6.0396 -6.7620 0.1802 39 1 7.2073 -6.5160 -1.1404 40 1 9.5860 -6.7604 0.6810 41 1 10.4418 -5.6772 1.8047 42 1 8.6627 -5.7333 1.8039 43 1 11.5576 -4.9079 -0.2936 44 1 10.6331 -3.8126 -1.3492 45 1 13.8872 -2.1335 -0.9539 46 1 4.3293 -5.5808 -0.6976 47 1 4.7297 -5.2216 1.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411927001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:14 Heat of formation + Delta-G solvation = -18.356610 kcal Electronic energy + Delta-G solvation = -27966.020331 eV Core-core repulsion = 24114.652557 eV Total energy + Delta-G solvation = -3851.367774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89732 -39.70311 -38.80466 -36.72412 -34.85557 -33.31639 -32.41954 -31.75817 -30.87543 -28.95157 -28.02152 -27.43132 -26.09760 -24.57961 -23.70558 -22.67012 -21.73490 -21.05548 -19.60257 -18.51166 -17.00153 -16.88371 -16.45697 -16.33504 -15.72393 -15.59998 -15.27113 -14.90187 -14.80366 -14.62408 -14.22213 -13.97126 -13.76643 -13.68840 -13.24074 -13.01194 -12.80587 -12.66402 -12.46440 -12.36049 -12.25667 -12.23995 -12.14225 -11.87507 -11.61239 -11.38279 -11.23276 -11.10784 -11.00818 -10.84433 -10.58846 -10.15911 -10.04210 -9.61931 -9.24208 -9.13498 -8.81834 -8.44394 -8.23223 -7.64385 -6.04933 -4.09833 0.38671 1.12702 2.13150 3.29370 3.36410 3.38868 3.42490 3.49688 3.54981 3.69871 4.13284 4.22657 4.35318 4.44591 4.65577 4.70697 4.86529 4.97221 5.02559 5.04442 5.06423 5.13822 5.20307 5.26795 5.29677 5.32251 5.45671 5.51866 5.55019 5.66570 5.67689 5.72685 5.78100 5.87757 5.96877 5.99726 6.07797 6.11810 6.25113 6.35002 6.61051 6.72808 6.79483 7.08914 7.25844 7.44514 7.53614 7.91523 8.22502 8.40390 8.89840 9.10152 9.55539 11.03094 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.002912 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.517893 B = 9614.394365 C =11355.326430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.395 3.605 3 O -0.457 6.457 4 C -0.174 4.174 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.069 4.069 8 C -0.104 4.104 9 C -0.041 4.041 10 C 0.078 3.922 11 N -0.477 5.477 12 C 0.053 3.947 13 H 0.065 0.935 14 C -0.152 4.152 15 C 0.511 3.489 16 O -0.522 6.522 17 N -0.602 5.602 18 C 0.081 3.919 19 C 0.247 3.753 20 C -0.525 4.525 21 H 0.056 0.944 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.897 3.103 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.071 3.929 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.263 0.737 46 H 0.096 0.904 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.933 -7.332 4.749 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.273 3.727 3 O -0.332 6.332 4 C -0.175 4.175 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.070 4.070 8 C -0.104 4.104 9 C -0.060 4.060 10 C -0.049 4.049 11 N -0.200 5.200 12 C -0.059 4.059 13 H 0.083 0.917 14 C -0.210 4.210 15 C 0.296 3.704 16 O -0.397 6.397 17 N -0.335 5.335 18 C -0.063 4.063 19 C 0.128 3.872 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.208 1.208 28 C -0.056 4.056 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.304 -6.321 3.622 25.372 hybrid contribution 0.290 0.701 1.549 1.725 sum -24.014 -5.620 5.172 25.199 Atomic orbital electron populations 1.22238 0.93671 1.05149 1.04495 1.22492 0.91645 0.87540 0.71033 1.90563 1.72178 1.34305 1.36174 1.20374 0.94058 0.94868 1.08183 1.21281 0.99815 0.91106 0.97008 1.20409 0.92250 0.98400 1.02230 1.21010 0.93945 0.95775 0.96283 1.20713 0.96502 0.93242 0.99963 1.20700 0.92774 0.97861 0.94672 1.21719 0.90981 0.91173 1.01025 1.65099 1.00212 1.01634 1.53105 1.21934 0.91176 0.95965 0.96860 0.91731 1.22055 1.02721 0.92342 1.03846 1.19927 0.84276 0.83316 0.82892 1.90671 1.86593 1.29900 1.32554 1.48101 1.07604 1.36901 1.40893 1.21788 1.02362 0.90171 0.91945 1.19289 0.78429 0.93329 0.96201 1.21449 1.07425 1.14090 1.13471 0.92546 1.24934 0.96292 0.97484 0.95388 1.69938 1.14802 1.40714 1.27848 0.86459 0.78186 0.82511 0.80359 1.19855 1.20963 1.20818 1.21772 0.88072 0.95483 1.00290 0.88851 0.89711 0.88787 0.84799 0.85300 0.84764 0.92051 0.87101 0.90294 0.91929 0.91149 0.93385 0.90811 0.92591 0.94983 0.93771 0.92747 0.88555 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 8.93 36.01 0.32 -0.82 16 2 C 0.39 4.10 7.23 -30.68 -0.22 3.88 16 3 O -0.46 -6.56 17.08 5.58 0.10 -6.46 16 4 C -0.17 -1.87 5.87 -105.06 -0.62 -2.48 16 5 C -0.07 -0.60 9.47 -39.11 -0.37 -0.97 16 6 C -0.11 -1.00 10.02 -39.67 -0.40 -1.39 16 7 C -0.07 -0.78 6.27 -104.07 -0.65 -1.44 16 8 C -0.10 -1.40 6.26 -104.34 -0.65 -2.05 16 9 C -0.04 -0.54 9.58 -39.19 -0.38 -0.92 16 10 C 0.08 1.23 5.60 -4.10 -0.02 1.20 16 11 N -0.48 -7.12 5.01 -228.30 -1.14 -8.26 16 12 C 0.05 0.78 1.30 -68.87 -0.09 0.70 16 13 H 0.07 0.88 7.13 -51.93 -0.37 0.51 16 14 C -0.15 -1.75 8.73 37.16 0.32 -1.43 16 15 C 0.51 10.52 6.86 -10.98 -0.08 10.45 16 16 O -0.52 -13.10 14.50 5.55 0.08 -13.02 16 17 N -0.60 -12.55 2.86 -182.95 -0.52 -13.07 16 18 C 0.08 1.24 8.79 59.85 0.53 1.76 16 19 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 20 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 21 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 24 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 28 C 0.07 0.78 5.16 -4.09 -0.02 0.76 16 29 H 0.09 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.13 0.61 7.06 -52.49 -0.37 0.24 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.84 7.65 -52.49 -0.40 1.43 16 35 H 0.06 0.96 7.64 -51.93 -0.40 0.56 16 36 H 0.11 2.06 7.27 -51.93 -0.38 1.68 16 37 H 0.08 0.81 4.76 -51.93 -0.25 0.56 16 38 H 0.06 0.55 6.64 -51.93 -0.34 0.21 16 39 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 40 H 0.05 0.61 7.11 -51.93 -0.37 0.25 16 41 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 42 H 0.06 0.69 5.93 -51.93 -0.31 0.38 16 43 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 44 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 47 H 0.07 0.61 7.55 -51.93 -0.39 0.22 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -35.72 380.61 -9.68 -45.40 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.87 Total: -1.46 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.77 Total: 0.10 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.93 Total: -47.27 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.18 Total: -19.48 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.72 -9.68 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411927001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.048 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds