Wall clock time and date at job start Tue Mar 31 2020 16:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21253 * 120.00595 * 2 1 4 4 C 1.47175 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.39872 * 120.18173 * 0.02562 * 4 2 1 6 6 C 1.37843 * 119.82233 * 180.02562 * 5 4 2 7 7 C 1.38398 * 120.26382 * 0.02562 * 6 5 4 8 8 C 1.38854 * 120.21375 * 359.97228 * 7 6 5 9 9 C 1.37693 * 120.11254 * 0.04229 * 8 7 6 10 10 C 1.51220 * 108.12332 * 179.97438 * 8 7 6 11 11 N 1.48034 * 105.74697 * 17.57571 * 10 8 7 12 12 C 1.46899 * 111.00145 * 212.89083 * 11 10 8 13 13 H 1.09004 * 109.46866 * 52.02200 * 12 11 10 14 14 C 1.53002 * 109.47216 * 172.01626 * 12 11 10 15 15 C 1.50696 * 109.47204 * 292.01813 * 12 11 10 16 16 O 1.21284 * 119.99981 * 0.02562 * 15 12 11 17 17 N 1.34784 * 119.99886 * 179.97438 * 15 12 11 18 18 C 1.46503 * 119.99797 * 359.97438 * 17 15 12 19 19 C 1.46500 * 119.99724 * 180.02562 * 17 15 12 20 20 C 1.50702 * 109.47041 * 90.00225 * 19 17 15 21 21 H 1.08004 * 119.99976 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99647 * 179.97438 * 20 19 17 23 23 N 1.31515 * 120.00590 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99772 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47162 * 120.00152 * 24 22 20 27 27 H 1.48496 * 109.47171 * 239.99980 * 24 22 20 28 28 C 1.48027 * 103.91762 * 332.27528 * 11 10 8 29 29 H 1.09000 * 109.47380 * 240.00295 * 1 2 3 30 30 H 1.09002 * 109.46665 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46895 * 120.00122 * 1 2 3 32 32 H 1.07997 * 120.08473 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.86895 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.99700 * 180.02562 * 9 8 7 35 35 H 1.08999 * 110.20438 * 258.48135 * 10 8 7 36 36 H 1.09004 * 110.20284 * 136.67085 * 10 8 7 37 37 H 1.08993 * 109.47464 * 187.04881 * 14 12 11 38 38 H 1.08997 * 109.47010 * 307.05570 * 14 12 11 39 39 H 1.09003 * 109.46751 * 67.05008 * 14 12 11 40 40 H 1.09001 * 109.46332 * 90.00451 * 18 17 15 41 41 H 1.08997 * 109.47042 * 209.99913 * 18 17 15 42 42 H 1.08995 * 109.47182 * 330.00550 * 18 17 15 43 43 H 1.09000 * 109.46389 * 209.99812 * 19 17 15 44 44 H 1.08995 * 109.47299 * 330.00058 * 19 17 15 45 45 H 0.97000 * 120.00540 * 179.97438 * 23 22 20 46 46 H 1.08996 * 110.21116 * 146.74603 * 28 11 10 47 47 H 1.09003 * 110.20648 * 268.63855 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0500 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 1.5473 -2.4881 0.0006 6 6 2.2439 -3.6776 0.0016 7 6 3.6279 -3.6753 0.0032 8 6 4.3247 -2.4742 0.0032 9 6 3.6411 -1.2790 0.0025 10 6 5.8038 -2.7886 0.0058 11 7 5.9151 -4.2011 -0.4230 12 6 7.0528 -4.8616 0.2307 13 1 6.9898 -4.7114 1.3085 14 6 7.0191 -6.3597 -0.0782 15 6 8.3401 -4.2714 -0.2844 16 8 8.3126 -3.3871 -1.1140 17 7 9.5221 -4.7254 0.1777 18 6 9.5552 -5.7924 1.1811 19 6 10.7735 -4.1512 -0.3227 20 6 11.1710 -2.9825 0.5418 21 1 10.5529 -2.6959 1.3799 22 6 12.3236 -2.2792 0.2628 23 7 13.0764 -2.6285 -0.7574 24 14 12.8159 -0.8301 1.3339 25 1 11.8082 -0.6441 2.4087 26 1 14.1449 -1.0931 1.9422 27 1 12.8863 0.3984 0.5028 28 6 4.6334 -4.8052 0.0051 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 0.4673 -2.4931 0.0006 33 1 1.7076 -4.6150 0.0021 34 1 4.1849 -0.3459 0.0020 35 1 6.2130 -2.6661 1.0086 36 1 6.3278 -2.1396 -0.6959 37 1 7.7863 -6.8685 0.5054 38 1 6.0396 -6.7620 0.1802 39 1 7.2073 -6.5160 -1.1404 40 1 9.5860 -6.7604 0.6810 41 1 10.4418 -5.6772 1.8047 42 1 8.6627 -5.7333 1.8039 43 1 11.5576 -4.9079 -0.2936 44 1 10.6331 -3.8126 -1.3492 45 1 13.8872 -2.1335 -0.9539 46 1 4.3293 -5.5808 -0.6976 47 1 4.7297 -5.2216 1.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411927001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:13 Heat of formation + Delta-G solvation = -43.781214 kcal Electronic energy + Delta-G solvation = -27967.122825 eV Core-core repulsion = 24114.652557 eV Total energy + Delta-G solvation = -3852.470267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.89236 -40.86552 -39.99122 -37.79919 -36.61022 -34.97185 -33.93372 -32.60419 -31.73233 -30.03802 -29.34735 -28.66340 -27.56423 -25.82210 -25.16696 -23.79784 -22.73379 -22.20607 -20.43183 -20.01459 -18.74884 -18.14223 -17.84987 -17.46229 -17.07259 -16.54350 -16.48534 -16.17445 -16.00166 -15.80851 -15.60422 -15.06085 -14.84886 -14.64479 -14.36512 -14.28601 -14.13838 -13.83184 -13.59433 -13.53120 -13.26702 -13.23512 -13.09418 -12.98755 -12.96810 -12.86154 -12.61798 -12.54182 -12.42638 -12.31564 -12.14496 -11.86066 -11.71087 -10.85505 -10.68716 -10.54698 -10.07022 -9.95205 -9.42300 -9.27835 -8.26191 -6.41027 -0.42225 0.29792 1.31445 1.34633 1.35111 1.45624 1.82599 2.17149 2.36455 2.69284 2.81452 3.02735 3.03441 3.39040 3.40387 3.66263 3.91132 3.97929 3.99071 4.06449 4.19466 4.28322 4.36661 4.40662 4.44242 4.53710 4.64269 4.66424 4.70478 4.72648 4.79641 4.81764 4.87598 4.94783 4.96259 4.99226 5.09748 5.20230 5.22750 5.27004 5.37554 5.39889 5.52777 5.65276 5.77959 5.83964 5.88476 6.02895 6.51149 6.67045 6.77960 7.25240 7.49083 8.80896 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.002912 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.517893 B = 9614.394365 C =11355.326430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.392 3.608 3 O -0.514 6.514 4 C -0.188 4.188 5 C -0.050 4.050 6 C -0.104 4.104 7 C -0.070 4.070 8 C -0.134 4.134 9 C -0.069 4.069 10 C 0.084 3.916 11 N -0.500 5.500 12 C 0.066 3.934 13 H 0.085 0.915 14 C -0.145 4.145 15 C 0.497 3.503 16 O -0.583 6.583 17 N -0.609 5.609 18 C 0.075 3.925 19 C 0.261 3.739 20 C -0.540 4.540 21 H 0.050 0.950 22 C 0.007 3.993 23 N -0.927 5.927 24 Si 0.966 3.034 25 H -0.269 1.269 26 H -0.265 1.265 27 H -0.283 1.283 28 C 0.073 3.927 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.185 0.815 33 H 0.174 0.826 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.026 0.974 44 H -0.006 1.006 45 H 0.267 0.733 46 H 0.121 0.879 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.134 -10.353 6.864 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.274 3.726 3 O -0.394 6.394 4 C -0.189 4.189 5 C -0.067 4.067 6 C -0.122 4.122 7 C -0.070 4.070 8 C -0.134 4.134 9 C -0.088 4.088 10 C -0.044 4.044 11 N -0.225 5.225 12 C -0.046 4.046 13 H 0.103 0.897 14 C -0.202 4.202 15 C 0.285 3.715 16 O -0.463 6.463 17 N -0.341 5.341 18 C -0.067 4.067 19 C 0.140 3.860 20 C -0.579 4.579 21 H 0.068 0.932 22 C -0.192 4.192 23 N -0.567 5.567 24 Si 0.790 3.210 25 H -0.193 1.193 26 H -0.190 1.190 27 H -0.209 1.209 28 C -0.053 4.053 29 H 0.143 0.857 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.202 0.798 33 H 0.192 0.808 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.044 0.956 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.139 0.861 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.531 -9.410 5.774 30.593 hybrid contribution 1.554 1.615 0.836 2.392 sum -26.977 -7.794 6.610 28.848 Atomic orbital electron populations 1.22287 0.89173 1.06013 1.07143 1.23310 0.93978 0.86459 0.68850 1.90552 1.73706 1.36016 1.39109 1.20635 0.92903 0.96765 1.08589 1.21836 1.02088 0.89326 0.93469 1.20927 0.90921 1.00426 0.99940 1.21251 0.95368 0.94355 0.96046 1.20518 0.95222 0.94725 1.02974 1.20683 0.94524 0.96754 0.96857 1.21411 0.92601 0.91669 0.98731 1.64983 1.02223 1.01110 1.54143 1.21874 0.87740 0.97635 0.97333 0.89723 1.22091 1.05685 0.89333 1.03097 1.21138 0.86040 0.82414 0.81888 1.90642 1.87653 1.32630 1.35367 1.48118 1.06099 1.38002 1.41927 1.22136 1.03840 0.89522 0.91207 1.18723 0.80807 0.92911 0.93572 1.21703 1.07567 1.15111 1.13534 0.93186 1.25845 0.96290 1.00293 0.96722 1.70050 1.15308 1.42051 1.29315 0.85399 0.78525 0.78537 0.78532 1.19333 1.19010 1.20928 1.21925 0.85512 0.95479 1.02347 0.85731 0.90036 0.85927 0.79785 0.80814 0.87908 0.93330 0.92349 0.88614 0.87928 0.92896 0.90247 0.91624 0.88921 0.95567 0.98763 0.92363 0.86088 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 8.93 71.24 0.64 -0.88 16 2 C 0.39 7.93 7.23 28.03 0.20 8.14 16 3 O -0.51 -15.82 17.08 -2.94 -0.05 -15.87 16 4 C -0.19 -3.86 5.87 -20.15 -0.12 -3.98 16 5 C -0.05 -0.57 9.47 22.57 0.21 -0.36 16 6 C -0.10 -1.28 10.02 22.21 0.22 -1.05 16 7 C -0.07 -1.40 6.27 -19.50 -0.12 -1.52 16 8 C -0.13 -3.79 6.26 -19.68 -0.12 -3.92 16 9 C -0.07 -1.97 9.58 22.52 0.22 -1.76 16 10 C 0.08 2.88 5.60 85.50 0.48 3.36 16 11 N -0.50 -14.96 5.01 -876.19 -4.39 -19.35 16 12 C 0.07 1.90 1.30 44.17 0.06 1.96 16 13 H 0.09 2.12 7.13 -2.39 -0.02 2.10 16 14 C -0.14 -2.85 8.73 71.98 0.63 -2.22 16 15 C 0.50 21.47 6.86 87.65 0.60 22.07 16 16 O -0.58 -32.03 14.50 -3.04 -0.04 -32.07 16 17 N -0.61 -26.25 2.86 -851.13 -2.43 -28.69 16 18 C 0.07 2.16 8.79 127.77 1.12 3.28 16 19 C 0.26 14.49 5.16 85.63 0.44 14.93 16 20 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.01 0.44 5.46 84.65 0.46 0.91 16 23 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 24 Si 0.97 46.37 29.54 68.60 2.03 48.40 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 28 C 0.07 1.36 5.16 85.51 0.44 1.80 16 29 H 0.12 0.28 8.09 -2.39 -0.02 0.26 16 30 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 31 H 0.12 0.34 8.09 -2.39 -0.02 0.32 16 32 H 0.18 0.30 7.06 -2.91 -0.02 0.27 16 33 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 34 H 0.10 3.39 7.65 -2.91 -0.02 3.37 16 35 H 0.05 1.69 7.64 -2.39 -0.02 1.67 16 36 H 0.06 2.54 7.27 -2.39 -0.02 2.52 16 37 H 0.10 1.56 4.76 -2.39 -0.01 1.54 16 38 H 0.10 1.24 6.64 -2.39 -0.02 1.23 16 39 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 40 H 0.08 1.81 7.11 -2.39 -0.02 1.80 16 41 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 42 H 0.09 1.99 5.93 -2.39 -0.01 1.98 16 43 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 44 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.12 1.69 8.05 -2.39 -0.02 1.67 16 47 H 0.09 1.26 7.55 -2.39 -0.02 1.24 16 Total: -1.00 -90.46 380.61 1.98 -88.48 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.98 Total: 7.31 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.60 Total: 8.95 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -6.54 Total: -105.20 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.09 Total: -47.94 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -90.46 1.98 -88.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411927001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.699 kcal (2) G-P(sol) polarization free energy of solvation -90.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds