Wall clock time and date at job start Tue Mar 31 2020 17:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47123 * 2 1 4 4 C 1.46503 * 119.99888 * 270.00297 * 3 2 1 5 5 C 1.34777 * 120.00035 * 90.00309 * 3 2 1 6 6 O 1.21548 * 119.99658 * 5.04909 * 5 3 2 7 7 C 1.47863 * 120.00163 * 185.04285 * 5 3 2 8 8 C 1.39703 * 120.07237 * 324.19736 * 7 5 3 9 9 C 1.38059 * 120.14159 * 180.02562 * 8 7 5 10 10 C 1.38095 * 120.29684 * 359.71717 * 9 8 7 11 11 C 1.39661 * 120.14289 * 0.55698 * 10 9 8 12 12 C 1.47870 * 120.07156 * 179.71897 * 11 10 9 13 13 O 1.21547 * 119.99683 * 185.06536 * 12 11 10 14 14 N 1.34773 * 120.00057 * 5.06541 * 12 11 10 15 15 C 1.46500 * 120.00156 * 185.08386 * 14 12 11 16 16 C 1.52997 * 109.47111 * 184.98477 * 15 14 12 17 17 C 1.50693 * 115.55012 * 54.65259 * 16 15 14 18 18 H 1.08002 * 120.00139 * 215.82774 * 17 16 15 19 19 C 1.37875 * 120.00338 * 35.55266 * 17 16 15 20 20 N 1.31514 * 119.99921 * 356.72575 * 19 17 16 21 21 Si 1.86795 * 120.00273 * 176.73644 * 19 17 16 22 22 H 1.48500 * 109.47136 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47594 * 119.99741 * 21 19 17 24 24 H 1.48505 * 109.46840 * 239.99430 * 21 19 17 25 25 C 1.53001 * 117.49523 * 200.31888 * 16 15 14 26 26 C 1.53001 * 117.49724 * 268.97814 * 16 15 14 27 27 C 1.39289 * 120.07173 * 144.21882 * 7 5 3 28 28 H 1.09007 * 109.46701 * 299.99600 * 1 2 3 29 29 H 1.08993 * 109.47091 * 59.99425 * 1 2 3 30 30 H 1.08993 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46701 * 240.00400 * 2 1 3 32 32 H 1.08993 * 109.47452 * 120.00171 * 2 1 3 33 33 H 1.08999 * 109.46960 * 268.74825 * 4 3 2 34 34 H 1.08994 * 109.47196 * 28.75689 * 4 3 2 35 35 H 1.09001 * 109.46837 * 148.75405 * 4 3 2 36 36 H 1.07999 * 119.93234 * 0.04031 * 8 7 5 37 37 H 1.08002 * 119.84690 * 180.02562 * 9 8 7 38 38 H 1.08005 * 119.93032 * 180.30534 * 10 9 8 39 39 H 0.96999 * 120.00122 * 5.07601 * 14 12 11 40 40 H 1.09007 * 109.46636 * 64.98430 * 15 14 12 41 41 H 1.08999 * 109.47058 * 304.98784 * 15 14 12 42 42 H 0.96998 * 120.00681 * 185.00244 * 20 19 17 43 43 H 1.09000 * 117.49763 * 215.00342 * 25 16 15 44 44 H 1.08998 * 117.50507 * 0.02608 * 25 16 15 45 45 H 1.09002 * 117.50292 * 359.97438 * 26 16 15 46 46 H 1.09002 * 117.49840 * 144.98125 * 26 16 15 47 47 H 1.08007 * 120.14679 * 359.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 2.2431 2.0165 1.1672 6 8 2.1290 1.4159 2.2178 7 6 2.6284 3.4441 1.1697 8 6 3.4518 3.9487 0.1602 9 6 3.8129 5.2812 0.1615 10 6 3.3588 6.1251 1.1558 11 6 2.5398 5.6323 2.1741 12 6 2.0596 6.5360 3.2414 13 8 1.4241 6.0888 4.1760 14 7 2.3265 7.8555 3.1779 15 6 1.9487 8.7336 4.2881 16 6 2.2484 10.1865 3.9139 17 6 1.6265 10.6682 2.6286 18 1 2.1619 11.3605 1.9958 19 6 0.3762 10.2207 2.2575 20 7 -0.2463 9.3248 2.9920 21 14 -0.4334 10.8867 0.7115 22 1 0.4675 11.8766 0.0682 23 1 -0.6953 9.7693 -0.2310 24 1 -1.7162 11.5441 1.0685 25 6 2.3834 11.1964 5.0553 26 6 3.6251 10.7417 4.2842 27 6 2.1716 4.2885 2.1789 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2981 1.9189 -1.5722 34 1 1.5968 1.6723 -2.0338 35 1 2.0741 3.1382 -1.1441 36 1 3.8064 3.2951 -0.6230 37 1 4.4493 5.6664 -0.6215 38 1 3.6409 7.1676 1.1483 39 1 2.7689 8.2238 2.3972 40 1 2.5191 8.4620 5.1764 41 1 0.8837 8.6232 4.4924 42 1 -1.0925 8.9562 2.6938 43 1 2.0224 12.2092 4.8765 44 1 2.2592 10.8257 6.0728 45 1 4.3173 10.0721 4.7947 46 1 4.0813 11.4552 3.5979 47 1 1.5348 3.9034 2.9616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431151513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:20 Heat of formation + Delta-G solvation = -4.909004 kcal Electronic energy + Delta-G solvation = -28091.682764 eV Core-core repulsion = 24240.898122 eV Total energy + Delta-G solvation = -3850.784642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.61570 -39.24274 -37.72055 -36.59126 -36.09457 -33.25488 -32.39484 -32.14849 -31.03197 -30.34199 -27.19989 -26.24320 -25.44621 -24.56100 -23.19403 -22.25334 -21.28517 -20.38660 -19.36473 -19.19093 -17.75387 -16.84220 -16.53100 -16.23354 -15.82711 -15.71047 -15.00912 -14.87205 -14.43069 -14.28004 -14.19058 -13.89304 -13.71901 -13.57102 -13.29985 -13.08808 -12.88181 -12.75875 -12.49464 -12.27446 -12.18285 -11.78191 -11.56654 -11.47384 -11.29496 -11.24432 -11.11729 -10.72973 -10.54625 -10.27944 -10.00902 -9.76096 -9.17444 -9.07271 -8.98850 -8.92094 -8.87992 -8.87770 -8.31761 -7.86864 -6.01628 -4.22805 0.77824 1.17615 2.57431 2.74893 3.17942 3.28740 3.30446 3.38304 3.98805 4.20189 4.27080 4.29687 4.63650 4.79460 4.83376 4.84430 4.90250 4.97314 5.13569 5.16119 5.22192 5.31844 5.36663 5.42232 5.43710 5.48032 5.66973 5.73624 5.90697 5.94093 5.99579 6.19523 6.26797 6.27933 6.31542 6.41034 6.50994 6.58527 6.68523 6.77877 6.87581 7.07052 7.09896 7.23170 7.54432 7.61448 7.95849 7.98910 8.27655 8.52018 8.79381 9.12854 9.41345 10.87294 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.003023 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.793179 B = 9259.954993 C = 9798.763900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.616 5.616 4 C 0.067 3.933 5 C 0.564 3.436 6 O -0.529 6.529 7 C -0.147 4.147 8 C -0.086 4.086 9 C -0.134 4.134 10 C -0.063 4.063 11 C -0.121 4.121 12 C 0.545 3.455 13 O -0.551 6.551 14 N -0.674 5.674 15 C 0.162 3.838 16 C 0.036 3.964 17 C -0.499 4.499 18 H 0.061 0.939 19 C 0.074 3.926 20 N -0.865 5.865 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.198 4.198 26 C -0.212 4.212 27 C -0.010 4.010 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.396 0.604 40 H 0.020 0.980 41 H 0.120 0.880 42 H 0.263 0.737 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 -13.724 -11.728 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.350 5.350 4 C -0.075 4.075 5 C 0.353 3.647 6 O -0.406 6.406 7 C -0.150 4.150 8 C -0.105 4.105 9 C -0.152 4.152 10 C -0.082 4.082 11 C -0.124 4.124 12 C 0.330 3.670 13 O -0.431 6.431 14 N -0.320 5.320 15 C 0.039 3.961 16 C 0.035 3.965 17 C -0.536 4.536 18 H 0.080 0.920 19 C -0.130 4.130 20 N -0.500 5.500 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.237 4.237 26 C -0.250 4.250 27 C -0.030 4.030 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.231 0.769 40 H 0.038 0.962 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.004 -14.399 -10.437 18.770 hybrid contribution -0.254 0.715 -1.360 1.557 sum 5.750 -13.684 -11.797 18.960 Atomic orbital electron populations 1.22149 0.95731 1.02280 1.02621 1.21443 0.94537 0.81875 1.03259 1.47761 1.66647 1.14418 1.06162 1.22284 1.00919 0.99062 0.85267 1.18395 0.76498 0.86499 0.83322 1.90789 1.51441 1.67305 1.31025 1.19706 1.03638 0.93315 0.98310 1.21805 0.95863 0.96086 0.96748 1.21038 1.01392 0.93310 0.99505 1.21674 0.93866 1.00341 0.92312 1.20256 1.00402 0.94514 0.97225 1.17979 0.80626 0.82838 0.85588 1.90720 1.40485 1.76488 1.35418 1.45545 1.58302 1.05974 1.22202 1.21148 1.03400 0.86856 0.84703 1.19239 0.92415 0.90348 0.94518 1.20532 1.00880 1.27815 1.04380 0.92039 1.25007 0.96655 0.94681 0.96690 1.69844 1.16492 1.27221 1.36475 0.86530 0.79659 0.78996 0.82827 1.19724 1.20962 1.20846 1.22939 1.03070 1.01112 0.96542 1.22963 0.91975 1.05021 1.05024 1.21287 0.95006 0.91357 0.95323 0.92025 0.92523 0.91486 0.90511 0.89599 0.92141 0.91047 0.89585 0.84491 0.84878 0.84659 0.76884 0.96189 0.86220 0.92632 0.90193 0.91423 0.91322 0.90601 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.11 0.97 6.16 -4.04 -0.02 0.94 16 3 N -0.62 -6.36 2.87 -182.69 -0.52 -6.88 16 4 C 0.07 0.46 8.82 59.85 0.53 0.99 16 5 C 0.56 7.99 7.39 -12.32 -0.09 7.90 16 6 O -0.53 -9.40 16.39 5.32 0.09 -9.32 16 7 C -0.15 -2.04 5.35 -105.02 -0.56 -2.60 16 8 C -0.09 -0.92 7.48 -39.10 -0.29 -1.21 16 9 C -0.13 -1.44 10.02 -39.70 -0.40 -1.84 16 10 C -0.06 -0.86 9.51 -39.10 -0.37 -1.24 16 11 C -0.12 -2.09 5.87 -105.02 -0.62 -2.71 16 12 C 0.54 11.66 7.76 -12.32 -0.10 11.57 16 13 O -0.55 -13.80 16.33 5.32 0.09 -13.71 16 14 N -0.67 -14.28 5.05 -61.24 -0.31 -14.59 16 15 C 0.16 3.80 4.63 -4.04 -0.02 3.78 16 16 C 0.04 0.82 2.02 -155.66 -0.31 0.50 16 17 C -0.50 -12.37 8.45 -34.44 -0.29 -12.66 16 18 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 19 C 0.07 1.87 5.32 -17.82 -0.09 1.78 16 20 N -0.86 -22.95 10.18 55.43 0.56 -22.38 16 21 Si 0.89 19.81 29.54 -169.99 -5.02 14.78 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.20 -4.26 9.96 -26.69 -0.27 -4.53 16 26 C -0.21 -4.30 9.93 -26.69 -0.26 -4.56 16 27 C -0.01 -0.17 9.15 -38.78 -0.35 -0.52 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.09 0.87 7.36 -51.93 -0.38 0.49 16 33 H 0.06 0.30 7.10 -51.93 -0.37 -0.07 16 34 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.09 0.65 5.37 -51.93 -0.28 0.37 16 36 H 0.14 1.01 5.02 -52.49 -0.26 0.75 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 1.70 6.46 -52.48 -0.34 1.37 16 39 H 0.40 7.71 6.22 -40.82 -0.25 7.46 16 40 H 0.02 0.46 8.09 -51.92 -0.42 0.04 16 41 H 0.12 3.24 5.85 -51.93 -0.30 2.94 16 42 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 43 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.14 2.68 7.61 -52.48 -0.40 2.28 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -31.66 386.13 -9.22 -40.88 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.77 Total: 10.87 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -3.15 Total: -5.47 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.27 Total: -43.86 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.66 -9.22 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431151513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.967 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds