Wall clock time and date at job start Tue Mar 31 2020 17:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47123 * 2 1 4 4 C 1.46503 * 119.99888 * 270.00297 * 3 2 1 5 5 C 1.34777 * 120.00035 * 90.00309 * 3 2 1 6 6 O 1.21548 * 119.99658 * 5.04909 * 5 3 2 7 7 C 1.47863 * 120.00163 * 185.04285 * 5 3 2 8 8 C 1.39703 * 120.07237 * 324.19736 * 7 5 3 9 9 C 1.38059 * 120.14159 * 180.02562 * 8 7 5 10 10 C 1.38095 * 120.29684 * 359.71717 * 9 8 7 11 11 C 1.39661 * 120.14289 * 0.55698 * 10 9 8 12 12 C 1.47870 * 120.07156 * 179.71897 * 11 10 9 13 13 O 1.21547 * 119.99683 * 185.06536 * 12 11 10 14 14 N 1.34773 * 120.00057 * 5.06541 * 12 11 10 15 15 C 1.46500 * 120.00156 * 185.08386 * 14 12 11 16 16 C 1.52997 * 109.47111 * 184.98477 * 15 14 12 17 17 C 1.50693 * 115.55012 * 54.65259 * 16 15 14 18 18 H 1.08002 * 120.00139 * 215.82774 * 17 16 15 19 19 C 1.37875 * 120.00338 * 35.55266 * 17 16 15 20 20 N 1.31514 * 119.99921 * 356.72575 * 19 17 16 21 21 Si 1.86795 * 120.00273 * 176.73644 * 19 17 16 22 22 H 1.48500 * 109.47136 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47594 * 119.99741 * 21 19 17 24 24 H 1.48505 * 109.46840 * 239.99430 * 21 19 17 25 25 C 1.53001 * 117.49523 * 200.31888 * 16 15 14 26 26 C 1.53001 * 117.49724 * 268.97814 * 16 15 14 27 27 C 1.39289 * 120.07173 * 144.21882 * 7 5 3 28 28 H 1.09007 * 109.46701 * 299.99600 * 1 2 3 29 29 H 1.08993 * 109.47091 * 59.99425 * 1 2 3 30 30 H 1.08993 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46701 * 240.00400 * 2 1 3 32 32 H 1.08993 * 109.47452 * 120.00171 * 2 1 3 33 33 H 1.08999 * 109.46960 * 268.74825 * 4 3 2 34 34 H 1.08994 * 109.47196 * 28.75689 * 4 3 2 35 35 H 1.09001 * 109.46837 * 148.75405 * 4 3 2 36 36 H 1.07999 * 119.93234 * 0.04031 * 8 7 5 37 37 H 1.08002 * 119.84690 * 180.02562 * 9 8 7 38 38 H 1.08005 * 119.93032 * 180.30534 * 10 9 8 39 39 H 0.96999 * 120.00122 * 5.07601 * 14 12 11 40 40 H 1.09007 * 109.46636 * 64.98430 * 15 14 12 41 41 H 1.08999 * 109.47058 * 304.98784 * 15 14 12 42 42 H 0.96998 * 120.00681 * 185.00244 * 20 19 17 43 43 H 1.09000 * 117.49763 * 215.00342 * 25 16 15 44 44 H 1.08998 * 117.50507 * 0.02608 * 25 16 15 45 45 H 1.09002 * 117.50292 * 359.97438 * 26 16 15 46 46 H 1.09002 * 117.49840 * 144.98125 * 26 16 15 47 47 H 1.08007 * 120.14679 * 359.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 2.2431 2.0165 1.1672 6 8 2.1290 1.4159 2.2178 7 6 2.6284 3.4441 1.1697 8 6 3.4518 3.9487 0.1602 9 6 3.8129 5.2812 0.1615 10 6 3.3588 6.1251 1.1558 11 6 2.5398 5.6323 2.1741 12 6 2.0596 6.5360 3.2414 13 8 1.4241 6.0888 4.1760 14 7 2.3265 7.8555 3.1779 15 6 1.9487 8.7336 4.2881 16 6 2.2484 10.1865 3.9139 17 6 1.6265 10.6682 2.6286 18 1 2.1619 11.3605 1.9958 19 6 0.3762 10.2207 2.2575 20 7 -0.2463 9.3248 2.9920 21 14 -0.4334 10.8867 0.7115 22 1 0.4675 11.8766 0.0682 23 1 -0.6953 9.7693 -0.2310 24 1 -1.7162 11.5441 1.0685 25 6 2.3834 11.1964 5.0553 26 6 3.6251 10.7417 4.2842 27 6 2.1716 4.2885 2.1789 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2981 1.9189 -1.5722 34 1 1.5968 1.6723 -2.0338 35 1 2.0741 3.1382 -1.1441 36 1 3.8064 3.2951 -0.6230 37 1 4.4493 5.6664 -0.6215 38 1 3.6409 7.1676 1.1483 39 1 2.7689 8.2238 2.3972 40 1 2.5191 8.4620 5.1764 41 1 0.8837 8.6232 4.4924 42 1 -1.0925 8.9562 2.6938 43 1 2.0224 12.2092 4.8765 44 1 2.2592 10.8257 6.0728 45 1 4.3173 10.0721 4.7947 46 1 4.0813 11.4552 3.5979 47 1 1.5348 3.9034 2.9616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431151513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:19 Heat of formation + Delta-G solvation = -24.401573 kcal Electronic energy + Delta-G solvation = -28092.528025 eV Core-core repulsion = 24240.898122 eV Total energy + Delta-G solvation = -3851.629903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68589 -40.68672 -39.06525 -38.30788 -37.03148 -34.95264 -34.15075 -33.30222 -32.14273 -31.28806 -28.04105 -27.85610 -27.30157 -25.48224 -24.46500 -23.20699 -22.96198 -21.64388 -21.14581 -20.46312 -19.11326 -18.06317 -17.85542 -17.32520 -17.11366 -16.75435 -16.74875 -16.38398 -15.94551 -15.57366 -15.49534 -15.16621 -14.76220 -14.74846 -14.51018 -14.22237 -14.19332 -13.81620 -13.54562 -13.52192 -13.37782 -13.10717 -12.93247 -12.91702 -12.62087 -12.53765 -12.29046 -12.25941 -12.02851 -11.98831 -11.55990 -11.11738 -10.94126 -10.81907 -10.64853 -10.16804 -10.12613 -10.07161 -9.73920 -9.63215 -7.93140 -6.20359 -0.31058 0.02391 1.41048 1.47070 1.50723 1.56092 1.86741 2.08001 2.41009 2.46064 2.85044 3.07921 3.37615 3.63073 3.78073 3.84094 4.01939 4.06175 4.15552 4.23793 4.27044 4.27542 4.37484 4.50374 4.53595 4.60895 4.67319 4.74799 4.79315 4.80932 4.85818 4.91737 4.96389 4.96984 5.10906 5.17097 5.24082 5.24595 5.27567 5.33526 5.51930 5.53378 5.60500 5.74320 5.84873 5.98944 6.22296 6.36986 6.77134 6.92991 6.99589 7.45452 7.47397 8.92705 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.003023 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.793179 B = 9259.954993 C = 9798.763900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.607 5.607 4 C 0.055 3.945 5 C 0.554 3.446 6 O -0.583 6.583 7 C -0.152 4.152 8 C -0.059 4.059 9 C -0.114 4.114 10 C -0.061 4.061 11 C -0.148 4.148 12 C 0.538 3.462 13 O -0.603 6.603 14 N -0.667 5.667 15 C 0.171 3.829 16 C 0.007 3.993 17 C -0.501 4.501 18 H 0.064 0.936 19 C 0.032 3.968 20 N -0.893 5.893 21 Si 0.950 3.050 22 H -0.260 1.260 23 H -0.283 1.283 24 H -0.292 1.292 25 C -0.202 4.202 26 C -0.182 4.182 27 C -0.034 4.034 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.148 0.852 39 H 0.405 0.595 40 H 0.016 0.984 41 H 0.080 0.920 42 H 0.254 0.746 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 -13.762 -16.382 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.338 5.338 4 C -0.086 4.086 5 C 0.343 3.657 6 O -0.464 6.464 7 C -0.155 4.155 8 C -0.077 4.077 9 C -0.132 4.132 10 C -0.080 4.080 11 C -0.151 4.151 12 C 0.326 3.674 13 O -0.487 6.487 14 N -0.313 5.313 15 C 0.048 3.952 16 C 0.006 3.994 17 C -0.538 4.538 18 H 0.082 0.918 19 C -0.169 4.169 20 N -0.530 5.530 21 Si 0.777 3.223 22 H -0.184 1.184 23 H -0.209 1.209 24 H -0.219 1.219 25 C -0.241 4.241 26 C -0.219 4.219 27 C -0.055 4.055 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.201 0.799 37 H 0.202 0.798 38 H 0.165 0.835 39 H 0.242 0.758 40 H 0.034 0.966 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.695 -14.413 -15.167 22.658 hybrid contribution -1.061 0.673 0.027 1.257 sum 7.634 -13.740 -15.139 21.824 Atomic orbital electron populations 1.22124 0.95735 1.03183 1.01362 1.21639 0.94524 0.81169 1.04210 1.47908 1.64736 1.14931 1.06250 1.22635 1.03664 0.98564 0.83761 1.18584 0.76535 0.86653 0.83881 1.90759 1.54101 1.68327 1.33199 1.19771 1.04317 0.92932 0.98490 1.22327 0.92846 0.96775 0.95717 1.21575 1.00105 0.92556 0.98932 1.21884 0.92789 1.01524 0.91800 1.19906 1.03430 0.93763 0.97970 1.18705 0.79552 0.83195 0.85964 1.90673 1.42884 1.77340 1.37825 1.45410 1.58134 1.05788 1.21976 1.20811 1.00901 0.88000 0.85535 1.19264 0.95253 0.90053 0.94812 1.20747 1.00846 1.27380 1.04854 0.91800 1.25646 0.97220 0.94847 0.99189 1.70069 1.16414 1.28626 1.37889 0.85623 0.78350 0.78429 0.79932 1.18429 1.20850 1.21889 1.22969 1.04143 1.00501 0.96476 1.22961 0.90860 1.04222 1.03864 1.21045 0.96208 0.92104 0.96097 0.95699 0.91214 0.89612 0.86332 0.91770 0.88825 0.88526 0.90086 0.79911 0.79777 0.83475 0.75797 0.96564 0.90220 0.93605 0.90302 0.90897 0.89725 0.89266 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 71.98 0.74 -1.92 16 2 C 0.11 1.66 6.16 86.38 0.53 2.19 16 3 N -0.61 -11.24 2.87 -850.17 -2.44 -13.69 16 4 C 0.05 0.48 8.82 127.77 1.13 1.60 16 5 C 0.55 15.87 7.39 86.79 0.64 16.51 16 6 O -0.58 -22.26 16.39 -3.87 -0.06 -22.32 16 7 C -0.15 -4.17 5.35 -20.12 -0.11 -4.28 16 8 C -0.06 -1.00 7.48 22.58 0.17 -0.83 16 9 C -0.11 -1.89 10.02 22.19 0.22 -1.67 16 10 C -0.06 -1.56 9.51 22.58 0.21 -1.34 16 11 C -0.15 -5.31 5.87 -20.12 -0.12 -5.43 16 12 C 0.54 24.62 7.76 86.79 0.67 25.30 16 13 O -0.60 -33.15 16.33 -3.86 -0.06 -33.22 16 14 N -0.67 -29.29 5.05 -465.95 -2.35 -31.65 16 15 C 0.17 8.39 4.63 86.38 0.40 8.79 16 16 C 0.01 0.32 2.02 -52.93 -0.11 0.21 16 17 C -0.50 -24.64 8.45 25.60 0.22 -24.42 16 18 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 19 C 0.03 1.64 5.32 84.65 0.45 2.09 16 20 N -0.89 -49.26 10.18 21.45 0.22 -49.04 16 21 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 25 C -0.20 -8.60 9.96 30.62 0.30 -8.30 16 26 C -0.18 -7.02 9.93 30.62 0.30 -6.72 16 27 C -0.03 -1.25 9.15 22.79 0.21 -1.04 16 28 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.12 0.90 8.07 -2.38 -0.02 0.88 16 32 H 0.06 1.31 7.36 -2.39 -0.02 1.29 16 33 H 0.09 0.28 7.10 -2.39 -0.02 0.26 16 34 H 0.10 0.45 8.06 -2.39 -0.02 0.43 16 35 H 0.08 0.83 5.37 -2.39 -0.01 0.82 16 36 H 0.18 1.47 5.02 -2.91 -0.01 1.45 16 37 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.15 3.34 6.46 -2.91 -0.02 3.32 16 39 H 0.41 15.86 6.22 -92.71 -0.58 15.28 16 40 H 0.02 0.79 8.09 -2.38 -0.02 0.77 16 41 H 0.08 4.61 5.85 -2.39 -0.01 4.59 16 42 H 0.25 13.96 8.32 -92.71 -0.77 13.19 16 43 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.10 4.43 7.61 -2.91 -0.02 4.40 16 Total: -1.00 -77.36 386.13 3.61 -73.76 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.42 Total: 32.74 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.87 Total: 0.75 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -4.58 Total: -94.37 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.13 Total: -55.53 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -77.36 3.61 -73.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431151513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.354 kcal (2) G-P(sol) polarization free energy of solvation -77.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds