Wall clock time and date at job start Tue Mar 31 2020 15:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47408 * 2 1 4 4 C 1.52997 * 109.47325 * 239.99934 * 2 1 3 5 5 C 1.50695 * 109.47571 * 174.99746 * 4 2 1 6 6 O 1.21285 * 120.00108 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00502 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00408 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47313 * 178.27663 * 8 7 5 10 10 C 1.50695 * 115.54631 * 65.14505 * 9 8 7 11 11 H 1.08010 * 120.00211 * 265.40555 * 10 9 8 12 12 C 1.37874 * 120.00333 * 85.40603 * 10 9 8 13 13 N 1.31518 * 119.99866 * 353.55161 * 12 10 9 14 14 Si 1.86805 * 120.00219 * 173.55476 * 12 10 9 15 15 H 1.48500 * 109.46921 * 60.00307 * 14 12 10 16 16 H 1.48497 * 109.46931 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47272 * 299.99789 * 14 12 10 18 18 C 1.53000 * 117.50094 * 279.47422 * 9 8 7 19 19 C 1.52997 * 117.49936 * 210.81382 * 9 8 7 20 20 N 1.46497 * 109.47373 * 119.99525 * 2 1 3 21 21 C 1.34778 * 120.00497 * 275.27694 * 20 2 1 22 22 O 1.21553 * 119.99688 * 359.72127 * 21 20 2 23 23 C 1.47840 * 120.00120 * 179.72077 * 21 20 2 24 24 C 1.39575 * 120.14429 * 359.72509 * 23 21 20 25 25 C 1.37962 * 119.85224 * 179.78830 * 24 23 21 26 26 C 1.38359 * 120.14704 * 0.48828 * 25 24 23 27 27 C 1.38365 * 120.28554 * 359.74275 * 26 25 24 28 28 C 1.37958 * 120.15010 * 0.02562 * 27 26 25 29 29 H 1.08992 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47053 * 300.00223 * 1 2 3 31 31 H 1.08995 * 109.47214 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47316 * 295.00050 * 4 2 1 33 33 H 1.09002 * 109.46947 * 54.99701 * 4 2 1 34 34 H 0.97006 * 119.99744 * 359.97438 * 7 5 4 35 35 H 1.08997 * 109.47213 * 298.28044 * 8 7 5 36 36 H 1.08999 * 109.46810 * 58.28113 * 8 7 5 37 37 H 0.96997 * 120.00095 * 185.06877 * 13 12 10 38 38 H 1.09002 * 117.49595 * 0.02562 * 18 9 8 39 39 H 1.08996 * 117.49790 * 145.01745 * 18 9 8 40 40 H 1.09004 * 117.49704 * 214.98380 * 19 9 8 41 41 H 1.08997 * 117.49987 * 359.97438 * 19 9 8 42 42 H 0.97005 * 119.99767 * 94.99606 * 20 2 1 43 43 H 1.08003 * 120.07598 * 0.02562 * 24 23 21 44 44 H 1.08004 * 119.92472 * 180.23212 * 25 24 23 45 45 H 1.07992 * 119.85587 * 179.71889 * 26 25 24 46 46 H 1.08009 * 119.92244 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.07199 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 8 4.1451 -0.0211 -0.4441 7 7 4.2149 -1.1796 -2.3348 8 6 5.6749 -1.0766 -2.3963 9 6 6.1885 -1.8338 -3.6227 10 6 5.7694 -1.2710 -4.9563 11 1 4.8951 -1.6610 -5.4565 12 6 6.5019 -0.2581 -5.5381 13 7 7.4892 0.3037 -4.8753 14 14 6.0921 0.3162 -7.2678 15 1 4.6947 0.8173 -7.3049 16 1 7.0194 1.4079 -7.6595 17 1 6.2361 -0.8194 -8.2136 18 6 6.3254 -3.3533 -3.5087 19 6 7.5762 -2.4712 -3.5295 20 7 2.0184 -0.6905 1.1962 21 6 2.1419 -0.0195 2.3585 22 8 1.8528 1.1599 2.4131 23 6 2.6289 -0.7179 3.5671 24 6 2.9562 -2.0735 3.5093 25 6 3.4142 -2.7182 4.6397 26 6 3.5399 -2.0265 5.8314 27 6 3.2125 -0.6837 5.8966 28 6 2.7578 -0.0260 4.7724 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7325 -1.6548 -3.0294 35 1 5.9625 -0.0279 -2.4700 36 1 6.1079 -1.5096 -1.4945 37 1 7.9568 1.0644 -5.2542 38 1 6.0492 -3.8137 -2.5601 39 1 6.1127 -3.9460 -4.3984 40 1 8.1859 -2.4838 -4.4329 41 1 8.1235 -2.3509 -2.5946 42 1 2.2490 -1.6317 1.1527 43 1 2.8548 -2.6157 2.5807 44 1 3.6714 -3.7663 4.5953 45 1 3.8946 -2.5370 6.7144 46 1 3.3132 -0.1493 6.8298 47 1 2.5023 1.0220 4.8248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435225740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:52 Heat of formation + Delta-G solvation = -33.463569 kcal Electronic energy + Delta-G solvation = -27697.932926 eV Core-core repulsion = 23845.910065 eV Total energy + Delta-G solvation = -3852.022861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35066 -39.23888 -38.25990 -36.79887 -35.56399 -33.29297 -32.39572 -32.00952 -31.13298 -30.46419 -28.42416 -26.04442 -25.05534 -24.21629 -22.76275 -21.56295 -21.20112 -20.41267 -19.78081 -19.33092 -18.15193 -16.79398 -16.59903 -16.15148 -15.96874 -15.25547 -15.05258 -14.85720 -14.75360 -14.65449 -14.39825 -13.88709 -13.81770 -13.58698 -13.33327 -13.06422 -12.86089 -12.58804 -12.32048 -12.28393 -11.89817 -11.85787 -11.65520 -11.49544 -11.31992 -11.03507 -11.00260 -10.95419 -10.58326 -10.31904 -9.87253 -9.69953 -9.34346 -9.22672 -9.18763 -9.01691 -8.94375 -8.53869 -8.31215 -8.10882 -6.11435 -4.20844 0.71305 1.15440 2.86799 3.12196 3.21926 3.23923 3.30674 3.31261 3.76838 3.79987 4.31871 4.55135 4.59189 4.70942 4.74390 4.92800 5.00579 5.14833 5.16615 5.18012 5.27856 5.28785 5.43426 5.49941 5.57916 5.58344 5.69312 5.75384 5.98186 6.00052 6.11020 6.15279 6.20226 6.22608 6.28673 6.42323 6.51547 6.52629 6.63771 6.67102 6.85238 7.05108 7.25141 7.39385 7.44564 7.53141 7.77203 8.26459 8.27804 8.29520 8.79453 8.86544 9.46365 10.96290 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.002682 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.048297 B =10438.105362 C =11371.252556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.098 0.902 4 C -0.153 4.153 5 C 0.497 3.503 6 O -0.546 6.546 7 N -0.704 5.704 8 C 0.164 3.836 9 C 0.029 3.971 10 C -0.503 4.503 11 H 0.059 0.941 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.211 4.211 19 C -0.149 4.149 20 N -0.706 5.706 21 C 0.565 3.435 22 O -0.540 6.540 23 C -0.128 4.128 24 C -0.085 4.085 25 C -0.128 4.128 26 C -0.099 4.099 27 C -0.130 4.130 28 C -0.062 4.062 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.395 0.605 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.298 -7.125 15.528 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.116 0.884 4 C -0.194 4.194 5 C 0.281 3.719 6 O -0.424 6.424 7 N -0.353 5.353 8 C 0.041 3.959 9 C 0.028 3.972 10 C -0.541 4.541 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.509 5.509 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.248 4.248 19 C -0.187 4.187 20 N -0.357 5.357 21 C 0.352 3.648 22 O -0.418 6.418 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.146 4.146 26 C -0.117 4.117 27 C -0.148 4.148 28 C -0.081 4.081 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.230 0.770 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.849 -5.728 16.098 20.794 hybrid contribution -0.052 -0.389 -1.474 1.525 sum -11.901 -6.118 14.624 19.823 Atomic orbital electron populations 1.22192 0.94909 1.02114 1.02862 1.20681 0.93114 0.98348 0.82452 0.88407 1.22056 0.94352 1.03027 0.99917 1.20443 0.89348 0.79672 0.82391 1.90720 1.70116 1.42524 1.39060 1.45998 1.09195 1.54963 1.25116 1.20966 0.77365 1.01600 0.95952 1.19020 0.96250 0.87985 0.93901 1.20296 1.11918 1.20125 1.01755 0.92240 1.24992 0.94365 0.96247 0.97418 1.69962 1.21599 1.21461 1.37908 0.86688 0.78254 0.78322 0.84896 1.20228 1.21257 1.20187 1.23016 1.05848 0.96074 0.99847 1.22491 0.91300 1.04381 1.00502 1.45739 1.66973 1.13666 1.09309 1.18128 0.77256 0.86365 0.83054 1.90745 1.50432 1.15378 1.85228 1.20034 1.04129 0.94394 0.94536 1.21329 0.96858 0.93482 0.98694 1.21114 1.00357 1.00362 0.92778 1.21359 0.97863 0.94568 0.97942 1.21164 1.00169 0.94865 0.98561 1.21305 0.95214 1.00463 0.91117 0.92441 0.91847 0.91297 0.88821 0.87370 0.76695 0.91062 0.94655 0.92721 0.91733 0.90375 0.89830 0.91714 0.76976 0.85735 0.85435 0.85683 0.85407 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.16 2.01 2.13 -67.93 -0.14 1.87 16 3 H 0.10 1.58 7.39 -51.93 -0.38 1.20 16 4 C -0.15 -1.78 5.24 -27.89 -0.15 -1.93 16 5 C 0.50 8.48 7.69 -10.99 -0.08 8.39 16 6 O -0.55 -11.59 15.35 5.55 0.09 -11.50 16 7 N -0.70 -12.74 5.47 -60.30 -0.33 -13.07 16 8 C 0.16 3.63 5.50 -4.04 -0.02 3.61 16 9 C 0.03 0.67 1.38 -155.66 -0.21 0.45 16 10 C -0.50 -12.66 8.63 -34.44 -0.30 -12.95 16 11 H 0.06 1.46 7.82 -52.48 -0.41 1.04 16 12 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 13 N -0.87 -24.10 12.91 55.43 0.72 -23.38 16 14 Si 0.89 20.31 29.55 -169.99 -5.02 15.29 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.21 -4.22 9.96 -26.69 -0.27 -4.49 16 19 C -0.15 -3.33 9.42 -26.70 -0.25 -3.59 16 20 N -0.71 -9.04 4.17 -54.75 -0.23 -9.27 16 21 C 0.56 8.46 7.74 -12.33 -0.10 8.37 16 22 O -0.54 -9.86 16.01 5.32 0.09 -9.78 16 23 C -0.13 -1.63 5.87 -104.97 -0.62 -2.24 16 24 C -0.08 -0.88 9.54 -39.18 -0.37 -1.25 16 25 C -0.13 -1.13 10.03 -39.64 -0.40 -1.52 16 26 C -0.10 -0.83 10.04 -39.49 -0.40 -1.22 16 27 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 28 C -0.06 -0.73 9.60 -39.19 -0.38 -1.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.40 6.49 8.37 -40.82 -0.34 6.15 16 35 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.40 4.17 6.64 -40.82 -0.27 3.89 16 43 H 0.12 1.05 6.41 -52.48 -0.34 0.72 16 44 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 46 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 47 H 0.14 1.60 7.65 -52.49 -0.40 1.20 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -32.69 398.74 -9.71 -42.40 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.20 Total: 11.91 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.82 Total: -8.61 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.16 Total: -45.72 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.17 Total: -21.28 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.69 -9.71 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435225740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.937 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds