Wall clock time and date at job start Tue Mar 31 2020 15:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47408 * 2 1 4 4 C 1.52997 * 109.47325 * 239.99934 * 2 1 3 5 5 C 1.50695 * 109.47571 * 174.99746 * 4 2 1 6 6 O 1.21285 * 120.00108 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00502 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00408 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47313 * 178.27663 * 8 7 5 10 10 C 1.50695 * 115.54631 * 65.14505 * 9 8 7 11 11 H 1.08010 * 120.00211 * 265.40555 * 10 9 8 12 12 C 1.37874 * 120.00333 * 85.40603 * 10 9 8 13 13 N 1.31518 * 119.99866 * 353.55161 * 12 10 9 14 14 Si 1.86805 * 120.00219 * 173.55476 * 12 10 9 15 15 H 1.48500 * 109.46921 * 60.00307 * 14 12 10 16 16 H 1.48497 * 109.46931 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47272 * 299.99789 * 14 12 10 18 18 C 1.53000 * 117.50094 * 279.47422 * 9 8 7 19 19 C 1.52997 * 117.49936 * 210.81382 * 9 8 7 20 20 N 1.46497 * 109.47373 * 119.99525 * 2 1 3 21 21 C 1.34778 * 120.00497 * 275.27694 * 20 2 1 22 22 O 1.21553 * 119.99688 * 359.72127 * 21 20 2 23 23 C 1.47840 * 120.00120 * 179.72077 * 21 20 2 24 24 C 1.39575 * 120.14429 * 359.72509 * 23 21 20 25 25 C 1.37962 * 119.85224 * 179.78830 * 24 23 21 26 26 C 1.38359 * 120.14704 * 0.48828 * 25 24 23 27 27 C 1.38365 * 120.28554 * 359.74275 * 26 25 24 28 28 C 1.37958 * 120.15010 * 0.02562 * 27 26 25 29 29 H 1.08992 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47053 * 300.00223 * 1 2 3 31 31 H 1.08995 * 109.47214 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47316 * 295.00050 * 4 2 1 33 33 H 1.09002 * 109.46947 * 54.99701 * 4 2 1 34 34 H 0.97006 * 119.99744 * 359.97438 * 7 5 4 35 35 H 1.08997 * 109.47213 * 298.28044 * 8 7 5 36 36 H 1.08999 * 109.46810 * 58.28113 * 8 7 5 37 37 H 0.96997 * 120.00095 * 185.06877 * 13 12 10 38 38 H 1.09002 * 117.49595 * 0.02562 * 18 9 8 39 39 H 1.08996 * 117.49790 * 145.01745 * 18 9 8 40 40 H 1.09004 * 117.49704 * 214.98380 * 19 9 8 41 41 H 1.08997 * 117.49987 * 359.97438 * 19 9 8 42 42 H 0.97005 * 119.99767 * 94.99606 * 20 2 1 43 43 H 1.08003 * 120.07598 * 0.02562 * 24 23 21 44 44 H 1.08004 * 119.92472 * 180.23212 * 25 24 23 45 45 H 1.07992 * 119.85587 * 179.71889 * 26 25 24 46 46 H 1.08009 * 119.92244 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.07199 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 8 4.1451 -0.0211 -0.4441 7 7 4.2149 -1.1796 -2.3348 8 6 5.6749 -1.0766 -2.3963 9 6 6.1885 -1.8338 -3.6227 10 6 5.7694 -1.2710 -4.9563 11 1 4.8951 -1.6610 -5.4565 12 6 6.5019 -0.2581 -5.5381 13 7 7.4892 0.3037 -4.8753 14 14 6.0921 0.3162 -7.2678 15 1 4.6947 0.8173 -7.3049 16 1 7.0194 1.4079 -7.6595 17 1 6.2361 -0.8194 -8.2136 18 6 6.3254 -3.3533 -3.5087 19 6 7.5762 -2.4712 -3.5295 20 7 2.0184 -0.6905 1.1962 21 6 2.1419 -0.0195 2.3585 22 8 1.8528 1.1599 2.4131 23 6 2.6289 -0.7179 3.5671 24 6 2.9562 -2.0735 3.5093 25 6 3.4142 -2.7182 4.6397 26 6 3.5399 -2.0265 5.8314 27 6 3.2125 -0.6837 5.8966 28 6 2.7578 -0.0260 4.7724 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7325 -1.6548 -3.0294 35 1 5.9625 -0.0279 -2.4700 36 1 6.1079 -1.5096 -1.4945 37 1 7.9568 1.0644 -5.2542 38 1 6.0492 -3.8137 -2.5601 39 1 6.1127 -3.9460 -4.3984 40 1 8.1859 -2.4838 -4.4329 41 1 8.1235 -2.3509 -2.5946 42 1 2.2490 -1.6317 1.1527 43 1 2.8548 -2.6157 2.5807 44 1 3.6714 -3.7663 4.5953 45 1 3.8946 -2.5370 6.7144 46 1 3.3132 -0.1493 6.8298 47 1 2.5023 1.0220 4.8248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435225740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:51 Heat of formation + Delta-G solvation = -54.315610 kcal Electronic energy + Delta-G solvation = -27698.837138 eV Core-core repulsion = 23845.910065 eV Total energy + Delta-G solvation = -3852.927073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41055 -40.53501 -39.24300 -38.47961 -36.73647 -34.88294 -33.97049 -33.35979 -31.89134 -31.35058 -29.56375 -27.79094 -26.72473 -25.15364 -23.52836 -22.99357 -22.47032 -21.45821 -21.32970 -20.95541 -19.11079 -18.33627 -17.72062 -17.56241 -16.97816 -16.65419 -16.45924 -16.23071 -16.06038 -15.80030 -15.50011 -15.35188 -14.90471 -14.69015 -14.40894 -14.33351 -13.98039 -13.77076 -13.61953 -13.49181 -13.27486 -12.96821 -12.86549 -12.82253 -12.75019 -12.59689 -12.39643 -12.06707 -12.03972 -11.94047 -11.48066 -11.00262 -10.88246 -10.82740 -10.45326 -10.22030 -10.02169 -9.95549 -9.83845 -9.77695 -8.10130 -6.23588 -0.11791 0.41009 1.43320 1.44819 1.51160 1.80268 1.89343 2.19595 2.39178 2.44811 2.92340 3.18499 3.49340 3.63217 3.74819 3.89683 3.94606 4.02131 4.21914 4.24129 4.26598 4.44162 4.46779 4.54051 4.56500 4.64919 4.66012 4.71128 4.74412 4.81859 4.85763 5.00312 5.04290 5.05991 5.08859 5.27667 5.31087 5.34882 5.45119 5.49275 5.52940 5.59782 5.62307 5.71542 5.78647 5.95421 6.36512 6.52220 6.82135 6.87335 7.22091 7.46123 7.48499 8.97097 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.002682 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.048297 B =10438.105362 C =11371.252556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 H 0.052 0.948 4 C -0.136 4.136 5 C 0.494 3.506 6 O -0.593 6.593 7 N -0.698 5.698 8 C 0.182 3.818 9 C 0.007 3.993 10 C -0.504 4.504 11 H 0.068 0.932 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 0.949 3.051 15 H -0.269 1.269 16 H -0.295 1.295 17 H -0.269 1.269 18 C -0.171 4.171 19 C -0.165 4.165 20 N -0.698 5.698 21 C 0.555 3.445 22 O -0.589 6.589 23 C -0.157 4.157 24 C -0.089 4.089 25 C -0.128 4.128 26 C -0.092 4.092 27 C -0.131 4.131 28 C -0.085 4.085 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.412 0.588 35 H 0.021 0.979 36 H 0.032 0.968 37 H 0.257 0.743 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.408 0.592 43 H 0.141 0.859 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.151 0.849 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 -10.453 15.606 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.071 0.929 4 C -0.176 4.176 5 C 0.281 3.719 6 O -0.474 6.474 7 N -0.348 5.348 8 C 0.057 3.943 9 C 0.007 3.993 10 C -0.542 4.542 11 H 0.086 0.914 12 C -0.178 4.178 13 N -0.548 5.548 14 Si 0.775 3.225 15 H -0.194 1.194 16 H -0.222 1.222 17 H -0.194 1.194 18 C -0.208 4.208 19 C -0.203 4.203 20 N -0.348 5.348 21 C 0.344 3.656 22 O -0.471 6.471 23 C -0.160 4.160 24 C -0.108 4.108 25 C -0.146 4.146 26 C -0.110 4.110 27 C -0.149 4.149 28 C -0.104 4.104 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.248 0.752 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.245 0.755 43 H 0.158 0.842 44 H 0.176 0.824 45 H 0.177 0.823 46 H 0.169 0.831 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.652 -9.119 16.140 23.022 hybrid contribution 0.537 0.609 -1.423 1.638 sum -13.115 -8.510 14.717 21.471 Atomic orbital electron populations 1.22098 0.92284 1.03839 1.02724 1.20704 0.95027 0.96253 0.82961 0.92924 1.22075 0.89498 1.05889 1.00161 1.21407 0.91562 0.77946 0.80955 1.90716 1.71677 1.44251 1.40757 1.45864 1.07559 1.55430 1.25974 1.20458 0.79959 0.98313 0.95547 1.19036 0.96764 0.90256 0.93270 1.20677 1.11614 1.19445 1.02481 0.91411 1.25734 0.94538 0.96849 1.00676 1.70108 1.23105 1.22116 1.39452 0.85752 0.78009 0.77713 0.80987 1.19384 1.22151 1.19373 1.23003 1.02246 0.93999 1.01557 1.22429 0.91705 1.06540 0.99673 1.45715 1.66156 1.14134 1.08797 1.18645 0.76663 0.86027 0.84293 1.90701 1.52841 1.17464 1.86101 1.20043 1.06385 0.95748 0.93873 1.21556 0.96594 0.92417 1.00229 1.21531 0.99110 1.01772 0.92183 1.21812 0.96124 0.94037 0.99070 1.21458 0.99269 0.95668 0.98458 1.21381 0.96718 1.00149 0.92193 0.89655 0.93911 0.89574 0.84337 0.84823 0.75216 0.96099 0.94976 0.93356 0.89028 0.89444 0.92038 0.91457 0.75540 0.84150 0.82424 0.82318 0.83112 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.48 71.98 0.68 -2.07 16 2 C 0.16 3.86 2.13 44.99 0.10 3.96 16 3 H 0.05 1.80 7.39 -2.38 -0.02 1.79 16 4 C -0.14 -2.81 5.24 29.85 0.16 -2.65 16 5 C 0.49 16.46 7.69 87.66 0.67 17.13 16 6 O -0.59 -25.89 15.35 -3.05 -0.05 -25.93 16 7 N -0.70 -24.44 5.47 -463.07 -2.54 -26.97 16 8 C 0.18 8.12 5.50 86.38 0.48 8.59 16 9 C 0.01 0.34 1.38 -52.93 -0.07 0.26 16 10 C -0.50 -24.99 8.63 25.60 0.22 -24.77 16 11 H 0.07 3.18 7.82 -2.91 -0.02 3.15 16 12 C 0.02 1.18 5.39 84.65 0.46 1.64 16 13 N -0.91 -51.68 12.91 21.45 0.28 -51.40 16 14 Si 0.95 41.67 29.55 68.60 2.03 43.69 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 C -0.17 -6.41 9.96 30.62 0.30 -6.11 16 19 C -0.17 -7.39 9.42 30.62 0.29 -7.10 16 20 N -0.70 -17.80 4.17 -445.41 -1.86 -19.66 16 21 C 0.55 17.56 7.74 86.78 0.67 18.24 16 22 O -0.59 -23.45 16.01 -3.88 -0.06 -23.51 16 23 C -0.16 -4.13 5.87 -20.09 -0.12 -4.25 16 24 C -0.09 -1.73 9.54 22.53 0.21 -1.51 16 25 C -0.13 -1.89 10.03 22.23 0.22 -1.66 16 26 C -0.09 -1.28 10.04 22.33 0.22 -1.05 16 27 C -0.13 -2.27 10.03 22.23 0.22 -2.04 16 28 C -0.09 -2.10 9.60 22.53 0.22 -1.88 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.14 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.41 12.29 8.37 -92.70 -0.78 11.52 16 35 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.03 1.43 8.09 -2.39 -0.02 1.41 16 37 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 38 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.13 16 40 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 41 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.41 8.01 6.64 -92.70 -0.62 7.40 16 43 H 0.14 2.10 6.41 -2.91 -0.02 2.08 16 44 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 46 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.12 3.16 7.65 -2.91 -0.02 3.14 16 Total: -1.00 -76.91 398.74 2.33 -74.58 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.41 Total: 34.48 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.94 Total: -5.28 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.11 Total: -98.03 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.11 Total: -49.44 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -76.91 2.33 -74.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435225740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.264 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds