Wall clock time and date at job start Tue Mar 31 2020 15:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47369 * 2 1 4 4 C 1.53003 * 109.47498 * 119.99961 * 2 1 3 5 5 C 1.50692 * 109.47376 * 185.00294 * 4 2 1 6 6 O 1.21279 * 119.99967 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00125 * 180.02562 * 5 4 2 8 8 C 1.37142 * 119.99773 * 4.36366 * 7 5 4 9 9 H 1.08006 * 119.99958 * 342.68465 * 8 7 5 10 10 C 1.38887 * 120.00115 * 162.68978 * 8 7 5 11 11 N 1.31425 * 119.99791 * 340.96814 * 10 8 7 12 12 Si 1.86798 * 120.00079 * 160.96978 * 10 8 7 13 13 H 1.48496 * 109.47368 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47244 * 120.00058 * 12 10 8 15 15 H 1.48503 * 109.47020 * 239.99949 * 12 10 8 16 16 C 1.39788 * 120.00127 * 184.36086 * 7 5 4 17 17 C 1.38966 * 120.07427 * 106.21171 * 16 7 5 18 18 C 1.38083 * 119.91970 * 180.29466 * 17 16 7 19 19 C 1.38299 * 120.07874 * 359.97438 * 18 17 16 20 20 C 1.38314 * 120.15766 * 359.97438 * 19 18 17 21 21 C 1.38077 * 120.07797 * 0.02562 * 20 19 18 22 22 N 1.46505 * 109.47107 * 239.99641 * 2 1 3 23 23 C 1.45757 * 117.94397 * 119.74015 * 22 2 1 24 24 C 1.53098 * 110.38540 * 160.74910 * 23 22 2 25 25 C 1.53341 * 108.53211 * 51.11021 * 24 23 22 26 26 C 1.53078 * 108.42519 * 292.31128 * 25 24 23 27 27 C 1.33348 * 117.94975 * 300.00156 * 22 2 1 28 28 O 1.21281 * 118.24406 * 2.24523 * 27 22 2 29 29 H 1.09001 * 109.46736 * 300.00103 * 1 2 3 30 30 H 1.08997 * 109.46707 * 60.00203 * 1 2 3 31 31 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47186 * 64.99548 * 4 2 1 33 33 H 1.09009 * 109.46766 * 305.00111 * 4 2 1 34 34 H 0.96996 * 120.00085 * 185.06928 * 11 10 8 35 35 H 1.08006 * 120.03778 * 0.25739 * 17 16 7 36 36 H 1.08001 * 119.95422 * 180.02562 * 18 17 16 37 37 H 1.08005 * 119.92119 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.95909 * 179.97438 * 20 19 18 39 39 H 1.07991 * 120.04396 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.29668 * 281.23636 * 23 22 2 41 41 H 1.08999 * 109.30339 * 40.61385 * 23 22 2 42 42 H 1.09008 * 109.80509 * 291.32040 * 24 23 22 43 43 H 1.09001 * 109.54800 * 170.74972 * 24 23 22 44 44 H 1.09005 * 109.67566 * 172.57959 * 25 24 23 45 45 H 1.09002 * 109.67218 * 52.04421 * 25 24 23 46 46 H 1.09002 * 109.39722 * 288.77165 * 26 25 24 47 47 H 1.08996 * 109.32854 * 168.98176 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 8 4.1450 -0.0210 0.4441 7 7 4.2150 -1.1804 2.3343 8 6 3.5435 -1.9283 3.2673 9 1 2.4706 -1.8427 3.3575 10 6 4.2431 -2.7957 4.0963 11 7 5.4527 -3.1886 3.7653 12 14 3.4646 -3.4038 5.6818 13 1 2.1075 -2.8180 5.8234 14 1 3.3639 -4.8850 5.6474 15 1 4.3041 -2.9914 6.8353 16 6 5.5976 -1.0048 2.4428 17 6 6.1178 -0.1564 3.4127 18 6 7.4837 0.0194 3.5130 19 6 8.3338 -0.6480 2.6500 20 6 7.8195 -1.4940 1.6842 21 6 6.4547 -1.6746 1.5780 22 7 2.0183 -0.6907 -1.1962 23 6 2.8482 0.0619 -2.1285 24 6 3.6412 -0.8916 -3.0262 25 6 2.6684 -1.9063 -3.6389 26 6 2.1401 -2.8069 -2.5196 27 6 1.6714 -1.9670 -1.3664 28 8 0.9376 -2.4765 -0.5461 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 1.2057 33 1 1.6054 -0.2617 2.1370 34 1 5.9124 -3.8505 4.3051 35 1 5.4545 0.3652 4.0868 36 1 7.8887 0.6783 4.2669 37 1 9.4017 -0.5082 2.7305 38 1 8.4862 -2.0132 1.0117 39 1 6.0538 -2.3349 0.8234 40 1 2.2122 0.6973 -2.7449 41 1 3.5428 0.6879 -1.5683 42 1 4.3925 -1.4159 -2.4354 43 1 4.1273 -0.3252 -3.8205 44 1 3.1886 -2.5110 -4.3818 45 1 1.8378 -1.3802 -4.1096 46 1 2.9361 -3.4715 -2.1835 47 1 1.3076 -3.4007 -2.8969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439254258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:57 Heat of formation + Delta-G solvation = -33.121813 kcal Electronic energy + Delta-G solvation = -30126.990886 eV Core-core repulsion = 26274.982845 eV Total energy + Delta-G solvation = -3852.008041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47363 -39.17168 -37.26805 -36.06825 -35.06012 -34.43069 -31.63302 -31.00996 -29.88695 -29.28499 -29.06301 -27.01261 -24.88831 -24.21623 -23.04191 -21.85974 -21.50584 -20.56774 -19.14678 -18.10715 -17.59877 -16.59256 -16.14884 -15.52703 -15.42355 -15.22520 -14.76876 -14.56800 -14.28507 -14.03515 -13.89359 -13.71204 -13.53488 -13.01375 -12.97974 -12.84008 -12.46003 -12.42706 -11.95396 -11.68330 -11.56875 -11.38548 -11.35605 -11.28465 -11.14101 -10.95932 -10.84022 -10.79701 -10.70291 -10.46490 -10.42596 -10.25196 -10.23426 -9.35794 -8.93284 -8.47307 -8.20079 -8.13220 -7.86553 -7.44877 -6.25811 -3.95587 2.45639 2.50881 3.08114 3.11244 3.22368 3.25461 3.44486 3.83499 4.07648 4.61501 4.82742 4.85259 4.90855 4.92997 5.02829 5.12002 5.42314 5.52399 5.59663 5.66200 5.69000 5.78397 5.81890 5.84498 5.88825 5.95716 5.97438 6.00295 6.05809 6.13261 6.20731 6.31046 6.33570 6.41055 6.45052 6.56033 6.61956 6.72144 6.85593 7.03963 7.10942 7.33380 7.42671 7.45044 7.66873 7.78475 8.00009 8.01085 8.46973 8.64840 9.05009 9.42248 9.85490 10.64888 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.005127 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.347841 B = 5459.866336 C = 6623.688933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.161 3.839 3 H 0.085 0.915 4 C -0.140 4.140 5 C 0.472 3.528 6 O -0.596 6.596 7 N -0.415 5.415 8 C -0.352 4.352 9 H 0.103 0.897 10 C 0.046 3.954 11 N -0.848 5.848 12 Si 0.916 3.084 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.240 3.760 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.148 4.148 20 C -0.121 4.121 21 C -0.069 4.069 22 N -0.578 5.578 23 C 0.117 3.883 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.135 4.135 27 C 0.515 3.485 28 O -0.555 6.555 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.270 0.730 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 4.568 -9.493 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.057 3.943 3 H 0.103 0.897 4 C -0.181 4.181 5 C 0.262 3.738 6 O -0.482 6.482 7 N -0.131 5.131 8 C -0.478 4.478 9 H 0.120 0.880 10 C -0.162 4.162 11 N -0.483 5.483 12 Si 0.742 3.258 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.206 1.206 16 C 0.149 3.851 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.088 4.088 22 N -0.309 5.309 23 C -0.006 4.006 24 C -0.171 4.171 25 C -0.159 4.159 26 C -0.175 4.175 27 C 0.303 3.697 28 O -0.435 6.435 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.114 0.886 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.449 4.501 -9.389 10.697 hybrid contribution -0.142 -0.662 1.100 1.292 sum -2.590 3.839 -8.289 9.495 Atomic orbital electron populations 1.22236 0.95168 1.04303 1.00947 1.20819 0.93300 0.96036 0.84116 0.89683 1.21893 0.93700 1.05081 0.97396 1.20200 0.89612 0.82641 0.81300 1.90460 1.70446 1.48284 1.38988 1.41359 1.03924 1.44473 1.23346 1.19598 0.93243 1.21791 1.13124 0.87960 1.25231 0.95716 0.96008 0.99242 1.69927 1.12832 1.27970 1.37555 0.86037 0.79333 0.78467 0.81918 1.19165 1.20701 1.20553 1.17137 0.83659 0.91518 0.92753 1.20970 0.94779 0.99551 0.99236 1.20655 0.93228 1.00804 0.99450 1.20719 0.98159 1.00039 0.97749 1.20692 0.94755 0.99571 0.99007 1.20779 0.92542 0.96792 0.98711 1.47117 1.49784 1.10949 1.23023 1.21451 0.93620 0.94318 0.91219 1.21859 0.98344 0.97790 0.99086 1.21656 0.99294 0.97653 0.97314 1.21647 1.02913 0.98468 0.94442 1.19957 0.80590 0.81894 0.87237 1.90607 1.37559 1.70682 1.44603 0.92161 0.93353 0.89736 0.87000 0.89712 0.91885 0.87528 0.87683 0.87840 0.87716 0.87957 0.93156 0.88509 0.90585 0.90513 0.91152 0.91596 0.88608 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.08 37.16 0.34 -2.16 16 2 C 0.16 2.73 2.20 -67.93 -0.15 2.58 16 3 H 0.09 1.41 7.60 -51.93 -0.39 1.01 16 4 C -0.14 -2.83 3.42 -27.89 -0.10 -2.92 16 5 C 0.47 11.00 7.41 -10.99 -0.08 10.92 16 6 O -0.60 -14.13 13.05 5.56 0.07 -14.06 16 7 N -0.41 -10.43 2.66 -58.98 -0.16 -10.58 16 8 C -0.35 -9.00 9.09 -14.94 -0.14 -9.13 16 9 H 0.10 2.52 6.56 -52.48 -0.34 2.18 16 10 C 0.05 1.16 5.15 -17.49 -0.09 1.07 16 11 N -0.85 -22.44 10.73 55.49 0.60 -21.84 16 12 Si 0.92 20.01 29.60 -169.99 -5.03 14.98 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 C 0.24 5.94 2.43 -83.69 -0.20 5.74 16 17 C -0.13 -2.90 9.84 -39.37 -0.39 -3.29 16 18 C -0.12 -2.48 10.04 -39.62 -0.40 -2.88 16 19 C -0.15 -2.88 10.04 -39.53 -0.40 -3.28 16 20 C -0.12 -2.51 10.04 -39.61 -0.40 -2.91 16 21 C -0.07 -1.64 8.68 -39.37 -0.34 -1.98 16 22 N -0.58 -9.49 2.23 -167.26 -0.37 -9.87 16 23 C 0.12 1.64 5.74 -4.39 -0.03 1.61 16 24 C -0.13 -1.63 6.03 -26.50 -0.16 -1.79 16 25 C -0.12 -1.31 6.03 -26.51 -0.16 -1.47 16 26 C -0.13 -1.82 6.03 -28.10 -0.17 -1.99 16 27 C 0.51 8.92 6.86 -11.88 -0.08 8.84 16 28 O -0.55 -11.29 12.46 5.56 0.07 -11.22 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.43 5.84 -51.93 -0.30 1.13 16 32 H 0.11 2.52 5.74 -51.93 -0.30 2.22 16 33 H 0.08 1.61 7.86 -51.92 -0.41 1.20 16 34 H 0.27 6.90 8.32 -40.82 -0.34 6.56 16 35 H 0.11 2.41 8.06 -52.48 -0.42 1.98 16 36 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 1.57 6.28 -51.93 -0.33 1.25 16 42 H 0.08 1.11 8.12 -51.92 -0.42 0.69 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -29.99 371.89 -9.28 -39.28 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.13 Total: 10.73 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.94 Total: -3.02 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.07 Total: -42.29 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.14 Total: -25.27 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.99 -9.28 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439254258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.153 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds