Wall clock time and date at job start Tue Mar 31 2020 15:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47369 * 2 1 4 4 C 1.53003 * 109.47498 * 119.99961 * 2 1 3 5 5 C 1.50692 * 109.47376 * 185.00294 * 4 2 1 6 6 O 1.21279 * 119.99967 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00125 * 180.02562 * 5 4 2 8 8 C 1.37142 * 119.99773 * 4.36366 * 7 5 4 9 9 H 1.08006 * 119.99958 * 342.68465 * 8 7 5 10 10 C 1.38887 * 120.00115 * 162.68978 * 8 7 5 11 11 N 1.31425 * 119.99791 * 340.96814 * 10 8 7 12 12 Si 1.86798 * 120.00079 * 160.96978 * 10 8 7 13 13 H 1.48496 * 109.47368 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47244 * 120.00058 * 12 10 8 15 15 H 1.48503 * 109.47020 * 239.99949 * 12 10 8 16 16 C 1.39788 * 120.00127 * 184.36086 * 7 5 4 17 17 C 1.38966 * 120.07427 * 106.21171 * 16 7 5 18 18 C 1.38083 * 119.91970 * 180.29466 * 17 16 7 19 19 C 1.38299 * 120.07874 * 359.97438 * 18 17 16 20 20 C 1.38314 * 120.15766 * 359.97438 * 19 18 17 21 21 C 1.38077 * 120.07797 * 0.02562 * 20 19 18 22 22 N 1.46505 * 109.47107 * 239.99641 * 2 1 3 23 23 C 1.45757 * 117.94397 * 119.74015 * 22 2 1 24 24 C 1.53098 * 110.38540 * 160.74910 * 23 22 2 25 25 C 1.53341 * 108.53211 * 51.11021 * 24 23 22 26 26 C 1.53078 * 108.42519 * 292.31128 * 25 24 23 27 27 C 1.33348 * 117.94975 * 300.00156 * 22 2 1 28 28 O 1.21281 * 118.24406 * 2.24523 * 27 22 2 29 29 H 1.09001 * 109.46736 * 300.00103 * 1 2 3 30 30 H 1.08997 * 109.46707 * 60.00203 * 1 2 3 31 31 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47186 * 64.99548 * 4 2 1 33 33 H 1.09009 * 109.46766 * 305.00111 * 4 2 1 34 34 H 0.96996 * 120.00085 * 185.06928 * 11 10 8 35 35 H 1.08006 * 120.03778 * 0.25739 * 17 16 7 36 36 H 1.08001 * 119.95422 * 180.02562 * 18 17 16 37 37 H 1.08005 * 119.92119 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.95909 * 179.97438 * 20 19 18 39 39 H 1.07991 * 120.04396 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.29668 * 281.23636 * 23 22 2 41 41 H 1.08999 * 109.30339 * 40.61385 * 23 22 2 42 42 H 1.09008 * 109.80509 * 291.32040 * 24 23 22 43 43 H 1.09001 * 109.54800 * 170.74972 * 24 23 22 44 44 H 1.09005 * 109.67566 * 172.57959 * 25 24 23 45 45 H 1.09002 * 109.67218 * 52.04421 * 25 24 23 46 46 H 1.09002 * 109.39722 * 288.77165 * 26 25 24 47 47 H 1.08996 * 109.32854 * 168.98176 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 8 4.1450 -0.0210 0.4441 7 7 4.2150 -1.1804 2.3343 8 6 3.5435 -1.9283 3.2673 9 1 2.4706 -1.8427 3.3575 10 6 4.2431 -2.7957 4.0963 11 7 5.4527 -3.1886 3.7653 12 14 3.4646 -3.4038 5.6818 13 1 2.1075 -2.8180 5.8234 14 1 3.3639 -4.8850 5.6474 15 1 4.3041 -2.9914 6.8353 16 6 5.5976 -1.0048 2.4428 17 6 6.1178 -0.1564 3.4127 18 6 7.4837 0.0194 3.5130 19 6 8.3338 -0.6480 2.6500 20 6 7.8195 -1.4940 1.6842 21 6 6.4547 -1.6746 1.5780 22 7 2.0183 -0.6907 -1.1962 23 6 2.8482 0.0619 -2.1285 24 6 3.6412 -0.8916 -3.0262 25 6 2.6684 -1.9063 -3.6389 26 6 2.1401 -2.8069 -2.5196 27 6 1.6714 -1.9670 -1.3664 28 8 0.9376 -2.4765 -0.5461 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 1.2057 33 1 1.6054 -0.2617 2.1370 34 1 5.9124 -3.8505 4.3051 35 1 5.4545 0.3652 4.0868 36 1 7.8887 0.6783 4.2669 37 1 9.4017 -0.5082 2.7305 38 1 8.4862 -2.0132 1.0117 39 1 6.0538 -2.3349 0.8234 40 1 2.2122 0.6973 -2.7449 41 1 3.5428 0.6879 -1.5683 42 1 4.3925 -1.4159 -2.4354 43 1 4.1273 -0.3252 -3.8205 44 1 3.1886 -2.5110 -4.3818 45 1 1.8378 -1.3802 -4.1096 46 1 2.9361 -3.4715 -2.1835 47 1 1.3076 -3.4007 -2.8969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439254258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:56 Heat of formation + Delta-G solvation = -48.050135 kcal Electronic energy + Delta-G solvation = -30127.638226 eV Core-core repulsion = 26274.982845 eV Total energy + Delta-G solvation = -3852.655382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86591 -40.88361 -38.96481 -37.34136 -36.63067 -35.99884 -33.56499 -32.31719 -31.57883 -30.79411 -30.35542 -28.55911 -26.82247 -25.31321 -24.35214 -23.39883 -23.19072 -21.91441 -20.97234 -19.54382 -19.15707 -18.02674 -17.76929 -17.25402 -16.81659 -16.58046 -16.52717 -16.27440 -15.96029 -15.46280 -15.13083 -15.09597 -14.82275 -14.57509 -14.44314 -14.11325 -14.11124 -13.97039 -13.42076 -13.28417 -13.06462 -12.92395 -12.87963 -12.78106 -12.69134 -12.45858 -12.30246 -12.19152 -12.04092 -11.95419 -11.80299 -11.76909 -11.63230 -11.23382 -10.30467 -10.28560 -10.00676 -9.57487 -9.50483 -9.24350 -8.16484 -5.94176 0.75577 0.81005 1.34797 1.41407 1.52976 1.74057 1.98387 2.21011 2.26051 2.89638 3.05642 3.25382 3.66860 3.92192 3.94062 3.96598 4.07073 4.13630 4.21573 4.27417 4.33884 4.38297 4.51736 4.58030 4.62728 4.64595 4.74226 4.78096 4.83998 4.88727 4.92955 4.96986 4.97947 5.03788 5.07678 5.15110 5.20818 5.34286 5.36150 5.40119 5.44402 5.66058 5.74726 5.77360 5.85874 6.03833 6.24756 6.59625 6.71803 7.10441 7.32030 7.54051 7.97625 8.70987 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.005127 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.347841 B = 5459.866336 C = 6623.688933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.090 0.910 4 C -0.131 4.131 5 C 0.462 3.538 6 O -0.604 6.604 7 N -0.430 5.430 8 C -0.368 4.368 9 H 0.102 0.898 10 C 0.005 3.995 11 N -0.871 5.871 12 Si 0.978 3.022 13 H -0.260 1.260 14 H -0.281 1.281 15 H -0.277 1.277 16 C 0.214 3.786 17 C -0.150 4.150 18 C -0.118 4.118 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.096 4.096 22 N -0.579 5.579 23 C 0.113 3.887 24 C -0.130 4.130 25 C -0.109 4.109 26 C -0.134 4.134 27 C 0.500 3.500 28 O -0.594 6.594 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.268 0.732 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 5.541 -10.276 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.108 0.892 4 C -0.171 4.171 5 C 0.254 3.746 6 O -0.491 6.491 7 N -0.146 5.146 8 C -0.494 4.494 9 H 0.120 0.880 10 C -0.199 4.199 11 N -0.507 5.507 12 Si 0.802 3.198 13 H -0.183 1.183 14 H -0.207 1.207 15 H -0.203 1.203 16 C 0.124 3.876 17 C -0.169 4.169 18 C -0.136 4.136 19 C -0.159 4.159 20 C -0.139 4.139 21 C -0.115 4.115 22 N -0.309 5.309 23 C -0.010 4.010 24 C -0.167 4.167 25 C -0.147 4.147 26 C -0.173 4.173 27 C 0.290 3.710 28 O -0.477 6.477 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.775 5.501 -10.199 11.723 hybrid contribution -0.258 -0.921 1.315 1.626 sum -2.033 4.580 -8.884 10.200 Atomic orbital electron populations 1.22115 0.93178 1.03371 1.02749 1.20850 0.94796 0.95643 0.83129 0.89185 1.21831 0.91605 1.04022 0.99671 1.20798 0.90875 0.82061 0.80868 1.90436 1.71043 1.48518 1.39071 1.41583 1.04567 1.44727 1.23733 1.19825 0.93518 1.22344 1.13687 0.88002 1.25989 0.96268 0.96076 1.01603 1.70076 1.13917 1.28369 1.38299 0.85094 0.78828 0.77685 0.78153 1.18338 1.20729 1.20291 1.17428 0.83621 0.92712 0.93884 1.21120 0.96365 1.00176 0.99285 1.21096 0.92043 1.00585 0.99924 1.21193 1.00307 0.98286 0.96136 1.21061 0.93691 0.99504 0.99625 1.20740 0.94227 0.97637 0.98935 1.47272 1.49594 1.11043 1.23013 1.21614 0.93651 0.94612 0.91077 1.21851 0.97819 0.97933 0.99139 1.21634 0.99572 0.97017 0.96454 1.21691 1.03137 0.98410 0.94109 1.20703 0.80137 0.82227 0.87906 1.90586 1.39418 1.71437 1.46214 0.90660 0.91208 0.91925 0.89544 0.89029 0.92171 0.88184 0.84135 0.83416 0.84895 0.90732 0.89852 0.91142 0.93955 0.87497 0.88590 0.89629 0.89767 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 9.08 71.98 0.65 -3.91 16 2 C 0.16 5.51 2.20 44.99 0.10 5.61 16 3 H 0.09 2.99 7.60 -2.39 -0.02 2.97 16 4 C -0.13 -5.52 3.42 29.85 0.10 -5.42 16 5 C 0.46 22.67 7.41 87.65 0.65 23.32 16 6 O -0.60 -29.97 13.05 -3.03 -0.04 -30.00 16 7 N -0.43 -22.63 2.66 -458.89 -1.22 -23.85 16 8 C -0.37 -19.60 9.09 84.02 0.76 -18.84 16 9 H 0.10 5.26 6.56 -2.91 -0.02 5.24 16 10 C 0.01 0.29 5.15 84.91 0.44 0.72 16 11 N -0.87 -47.31 10.73 21.65 0.23 -47.08 16 12 Si 0.98 41.77 29.60 68.60 2.03 43.80 16 13 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 16 C 0.21 10.96 2.43 38.22 0.09 11.05 16 17 C -0.15 -6.99 9.84 22.41 0.22 -6.77 16 18 C -0.12 -4.56 10.04 22.25 0.22 -4.34 16 19 C -0.14 -5.10 10.04 22.30 0.22 -4.88 16 20 C -0.12 -4.87 10.04 22.25 0.22 -4.65 16 21 C -0.10 -4.72 8.68 22.40 0.19 -4.52 16 22 N -0.58 -19.21 2.23 -802.28 -1.79 -21.00 16 23 C 0.11 3.08 5.74 86.55 0.50 3.57 16 24 C -0.13 -3.02 6.03 30.74 0.19 -2.84 16 25 C -0.11 -2.10 6.03 30.73 0.19 -1.92 16 26 C -0.13 -3.57 6.03 29.71 0.18 -3.39 16 27 C 0.50 17.73 6.86 87.71 0.60 18.33 16 28 O -0.59 -25.22 12.46 -3.03 -0.04 -25.25 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.15 5.84 -2.39 -0.01 2.13 16 32 H 0.09 4.15 5.74 -2.39 -0.01 4.13 16 33 H 0.09 3.63 7.86 -2.38 -0.02 3.61 16 34 H 0.27 13.96 8.32 -92.71 -0.77 13.19 16 35 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.07 3.95 8.06 -2.92 -0.02 3.93 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.32 6.28 -2.39 -0.02 2.30 16 42 H 0.04 1.27 8.12 -2.38 -0.02 1.25 16 43 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -68.98 371.89 5.67 -63.32 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: 0.96 Total: 38.93 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 5.53 Total: 1.14 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -2.78 Total: -91.94 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.08 Total: -55.26 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -68.98 5.67 -63.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439254258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.266 kcal (2) G-P(sol) polarization free energy of solvation -68.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds