Wall clock time and date at job start Tue Mar 31 2020 15:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47064 * 2 1 4 4 C 1.53009 * 109.47111 * 240.00369 * 2 1 3 5 5 C 1.50700 * 109.47188 * 172.69868 * 4 2 1 6 6 O 1.21286 * 119.99627 * 3.31969 * 5 4 2 7 7 N 1.34773 * 120.00039 * 183.04999 * 5 4 2 8 8 C 1.37140 * 119.99954 * 355.68804 * 7 5 4 9 9 H 1.07998 * 120.00343 * 300.92470 * 8 7 5 10 10 C 1.38887 * 120.00074 * 120.92261 * 8 7 5 11 11 N 1.31424 * 120.00459 * 179.49475 * 10 8 7 12 12 Si 1.86807 * 120.00030 * 359.49278 * 10 8 7 13 13 H 1.48499 * 109.47066 * 95.12608 * 12 10 8 14 14 H 1.48493 * 109.47461 * 215.13203 * 12 10 8 15 15 H 1.48503 * 109.46874 * 335.13065 * 12 10 8 16 16 C 1.39793 * 120.00096 * 175.69673 * 7 5 4 17 17 C 1.38959 * 120.07787 * 4.78395 * 16 7 5 18 18 C 1.38078 * 119.92032 * 179.79281 * 17 16 7 19 19 C 1.38306 * 120.07775 * 0.47142 * 18 17 16 20 20 C 1.38303 * 120.15897 * 359.78333 * 19 18 17 21 21 C 1.38086 * 120.07466 * 359.97438 * 20 19 18 22 22 N 1.46492 * 109.47352 * 120.00382 * 2 1 3 23 23 C 1.45758 * 117.94940 * 240.00062 * 22 2 1 24 24 C 1.52917 * 110.49024 * 160.92430 * 23 22 2 25 25 C 1.53335 * 108.67586 * 50.75529 * 24 23 22 26 26 C 1.53072 * 108.42518 * 292.46763 * 25 24 23 27 27 C 1.33353 * 117.95187 * 59.73947 * 22 2 1 28 28 O 1.21283 * 118.24205 * 2.22244 * 27 22 2 29 29 H 1.09002 * 109.47229 * 299.99500 * 1 2 3 30 30 H 1.09004 * 109.47692 * 59.99990 * 1 2 3 31 31 H 1.09003 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46771 * 52.69855 * 4 2 1 33 33 H 1.09000 * 109.46697 * 292.69742 * 4 2 1 34 34 H 0.96999 * 119.99976 * 180.02562 * 11 10 8 35 35 H 1.08007 * 120.03787 * 0.02562 * 17 16 7 36 36 H 1.07999 * 119.96077 * 180.25207 * 18 17 16 37 37 H 1.08004 * 119.92280 * 179.76641 * 19 18 17 38 38 H 1.08003 * 119.96575 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.03668 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.29750 * 281.24082 * 23 22 2 41 41 H 1.09003 * 109.30040 * 40.60529 * 23 22 2 42 42 H 1.09002 * 109.60019 * 170.50885 * 24 23 22 43 43 H 1.08997 * 109.60504 * 290.99441 * 24 23 22 44 44 H 1.09001 * 109.67736 * 52.20112 * 25 24 23 45 45 H 1.09000 * 109.67635 * 172.73475 * 25 24 23 46 46 H 1.09007 * 109.40313 * 169.02917 * 26 25 24 47 47 H 1.08993 * 109.40434 * 288.85480 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5361 -0.5668 -1.3430 6 8 4.1427 0.0067 -0.4631 7 7 4.2006 -1.0706 -2.4017 8 6 3.5289 -1.8000 -3.3491 9 1 3.0026 -2.6993 -3.0653 10 6 3.5254 -1.3820 -4.6736 11 7 2.8900 -2.0863 -5.5833 12 14 4.4237 0.1813 -5.1622 13 1 5.7850 -0.1610 -5.6470 14 1 3.6713 0.8674 -6.2429 15 1 4.5291 1.0801 -3.9848 16 6 5.5747 -0.8499 -2.5341 17 6 6.2754 -0.1974 -1.5270 18 6 7.6333 0.0151 -1.6593 19 6 8.2942 -0.4119 -2.7967 20 6 7.5990 -1.0570 -3.8034 21 6 6.2418 -1.2773 -3.6756 22 7 2.0183 -0.6906 1.1960 23 6 2.8530 0.0603 2.1255 24 6 2.8769 -0.6214 3.4942 25 6 3.2232 -2.1023 3.2991 26 6 2.0609 -2.7789 2.5681 27 6 1.6670 -1.9654 1.3690 28 8 0.9974 -2.4979 0.5093 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.5739 -0.2882 -2.1344 33 1 1.7872 -1.7796 -1.1864 34 1 2.8878 -1.7946 -6.5083 35 1 5.7592 0.1397 -0.6402 36 1 8.1794 0.5185 -0.8752 37 1 9.3557 -0.2411 -2.8992 38 1 8.1182 -1.3887 -4.6904 39 1 5.6995 -1.7807 -4.4624 40 1 3.8684 0.1164 1.7332 41 1 2.4552 1.0694 2.2325 42 1 3.6306 -0.1495 4.1246 43 1 1.8971 -0.5337 3.9636 44 1 4.1323 -2.1914 2.7044 45 1 3.3714 -2.5755 4.2698 46 1 2.3651 -3.7757 2.2486 47 1 1.2075 -2.8593 3.2412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439254518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:01 Heat of formation + Delta-G solvation = -17.561877 kcal Electronic energy + Delta-G solvation = -30188.754865 eV Core-core repulsion = 26337.421554 eV Total energy + Delta-G solvation = -3851.333312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69569 -39.79563 -37.56425 -36.20947 -35.26987 -34.83293 -32.19789 -31.16371 -30.13899 -29.49265 -29.25797 -27.11998 -25.21242 -24.33960 -23.18435 -22.09240 -21.46189 -20.70130 -19.42837 -18.31381 -17.90693 -16.74179 -16.31654 -15.84367 -15.72102 -15.50974 -15.28557 -14.52416 -14.20679 -14.11137 -14.02436 -13.76210 -13.67531 -13.36609 -13.07750 -12.97069 -12.80091 -12.67675 -12.32120 -12.15173 -11.90161 -11.65492 -11.46241 -11.38134 -11.36062 -11.02979 -10.95303 -10.93504 -10.82075 -10.70135 -10.48016 -10.19916 -10.01581 -9.38718 -9.04162 -8.98801 -8.32773 -8.26868 -8.04809 -7.00852 -6.51416 -4.51925 2.05636 2.16408 2.96578 3.12001 3.22555 3.30310 3.31221 3.60109 4.04524 4.18707 4.62651 4.69343 4.77576 4.79477 4.83225 4.88216 5.32576 5.36214 5.45875 5.49425 5.59456 5.59924 5.65713 5.67061 5.73373 5.84076 5.86372 5.90851 5.97702 6.01772 6.03718 6.15162 6.24331 6.30167 6.31918 6.40877 6.54277 6.56517 6.70695 6.84189 7.00367 7.17699 7.25747 7.30789 7.39013 7.75877 7.87439 8.04953 8.23764 8.53541 8.82122 9.10180 9.41246 10.50228 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.005101 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.738082 B = 5487.768642 C = 6675.591159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 H 0.087 0.913 4 C -0.140 4.140 5 C 0.506 3.494 6 O -0.562 6.562 7 N -0.410 5.410 8 C -0.363 4.363 9 H 0.108 0.892 10 C 0.080 3.920 11 N -0.857 5.857 12 Si 0.877 3.123 13 H -0.256 1.256 14 H -0.290 1.290 15 H -0.262 1.262 16 C 0.162 3.838 17 C -0.189 4.189 18 C -0.110 4.110 19 C -0.173 4.173 20 C -0.104 4.104 21 C -0.167 4.167 22 N -0.582 5.582 23 C 0.113 3.887 24 C -0.134 4.134 25 C -0.123 4.123 26 C -0.134 4.134 27 C 0.512 3.488 28 O -0.550 6.550 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.279 0.721 35 H 0.182 0.818 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 4.279 13.862 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.054 3.946 3 H 0.105 0.895 4 C -0.179 4.179 5 C 0.300 3.700 6 O -0.447 6.447 7 N -0.119 5.119 8 C -0.490 4.490 9 H 0.125 0.875 10 C -0.130 4.130 11 N -0.490 5.490 12 Si 0.704 3.296 13 H -0.181 1.181 14 H -0.218 1.218 15 H -0.187 1.187 16 C 0.066 3.934 17 C -0.208 4.208 18 C -0.128 4.128 19 C -0.193 4.193 20 C -0.123 4.123 21 C -0.187 4.187 22 N -0.313 5.313 23 C -0.010 4.010 24 C -0.172 4.172 25 C -0.161 4.161 26 C -0.173 4.173 27 C 0.300 3.700 28 O -0.430 6.430 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.198 0.802 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.529 4.218 13.656 14.303 hybrid contribution 0.613 0.631 -0.744 1.152 sum 1.142 4.849 12.913 13.840 Atomic orbital electron populations 1.22191 0.94819 1.04260 1.01250 1.20898 0.93724 0.96057 0.83966 0.89516 1.21924 0.92135 1.05985 0.97898 1.21044 0.90212 0.77215 0.81545 1.90067 1.68468 1.45456 1.40711 1.41455 1.03403 1.45018 1.22030 1.19020 1.33306 1.09082 0.87550 0.87498 1.25592 0.94458 0.96935 0.95991 1.69660 1.38658 1.38133 1.02574 0.86998 0.80186 0.83130 0.79316 1.18101 1.21759 1.18655 1.18624 0.85181 0.95694 0.93948 1.22886 0.94260 1.01587 1.02090 1.21014 0.94704 0.99951 0.97170 1.20895 0.99000 1.03748 0.95632 1.20803 0.93803 0.99249 0.98451 1.21150 0.94853 1.04006 0.98717 1.47179 1.49917 1.11166 1.23068 1.21476 0.96985 0.94383 0.88116 1.21883 1.02305 0.96093 0.96932 1.21634 0.98445 0.95288 1.00719 1.21638 0.99835 0.99980 0.95883 1.20011 0.80050 0.81757 0.88179 1.90642 1.40009 1.69392 1.42950 0.93226 0.91758 0.89936 0.88215 0.86122 0.91103 0.80168 0.87127 0.87482 0.87012 0.84385 0.89512 0.91505 0.90204 0.91561 0.90884 0.91085 0.88571 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.07 37.15 0.34 -2.08 16 2 C 0.16 2.55 2.19 -67.93 -0.15 2.40 16 3 H 0.09 1.35 7.57 -51.93 -0.39 0.96 16 4 C -0.14 -2.78 3.83 -27.88 -0.11 -2.89 16 5 C 0.51 11.26 7.47 -10.99 -0.08 11.18 16 6 O -0.56 -11.94 9.66 5.55 0.05 -11.88 16 7 N -0.41 -10.03 2.17 -58.98 -0.13 -10.16 16 8 C -0.36 -9.54 8.05 -14.94 -0.12 -9.66 16 9 H 0.11 3.04 8.06 -52.49 -0.42 2.62 16 10 C 0.08 2.10 4.49 -17.49 -0.08 2.02 16 11 N -0.86 -23.47 13.96 55.49 0.77 -22.69 16 12 Si 0.88 21.15 23.70 -169.99 -4.03 17.12 16 13 H -0.26 -5.95 6.05 56.52 0.34 -5.61 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.26 -6.62 6.79 56.52 0.38 -6.24 16 16 C 0.16 3.86 4.90 -83.69 -0.41 3.45 16 17 C -0.19 -4.08 9.06 -39.37 -0.36 -4.43 16 18 C -0.11 -2.05 10.04 -39.62 -0.40 -2.45 16 19 C -0.17 -3.16 10.04 -39.53 -0.40 -3.55 16 20 C -0.10 -2.08 9.90 -39.61 -0.39 -2.48 16 21 C -0.17 -3.86 5.64 -39.37 -0.22 -4.08 16 22 N -0.58 -8.78 2.29 -167.38 -0.38 -9.16 16 23 C 0.11 1.40 5.77 -4.48 -0.03 1.38 16 24 C -0.13 -1.26 6.02 -26.60 -0.16 -1.42 16 25 C -0.12 -1.25 6.03 -26.52 -0.16 -1.41 16 26 C -0.13 -1.61 6.03 -28.11 -0.17 -1.78 16 27 C 0.51 8.21 6.87 -11.88 -0.08 8.13 16 28 O -0.55 -10.75 12.44 5.55 0.07 -10.68 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.36 5.99 -51.93 -0.31 1.05 16 32 H 0.10 2.01 8.07 -51.93 -0.42 1.59 16 33 H 0.12 2.68 5.69 -51.93 -0.30 2.38 16 34 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.18 3.91 4.50 -56.38 -0.25 3.65 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 38 H 0.11 1.95 8.06 -52.48 -0.42 1.52 16 39 H 0.14 3.41 4.65 -52.48 -0.24 3.16 16 40 H 0.09 1.26 6.37 -51.93 -0.33 0.93 16 41 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 44 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -29.69 356.08 -8.20 -37.89 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.95 Total: 11.88 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.97 Total: -7.68 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.26 Total: -42.01 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.12 Total: -22.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.03 Total: 17.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.69 -8.20 -37.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439254518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.329 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds