Wall clock time and date at job start Tue Mar 31 2020 15:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47064 * 2 1 4 4 C 1.53009 * 109.47111 * 240.00369 * 2 1 3 5 5 C 1.50700 * 109.47188 * 172.69868 * 4 2 1 6 6 O 1.21286 * 119.99627 * 3.31969 * 5 4 2 7 7 N 1.34773 * 120.00039 * 183.04999 * 5 4 2 8 8 C 1.37140 * 119.99954 * 355.68804 * 7 5 4 9 9 H 1.07998 * 120.00343 * 300.92470 * 8 7 5 10 10 C 1.38887 * 120.00074 * 120.92261 * 8 7 5 11 11 N 1.31424 * 120.00459 * 179.49475 * 10 8 7 12 12 Si 1.86807 * 120.00030 * 359.49278 * 10 8 7 13 13 H 1.48499 * 109.47066 * 95.12608 * 12 10 8 14 14 H 1.48493 * 109.47461 * 215.13203 * 12 10 8 15 15 H 1.48503 * 109.46874 * 335.13065 * 12 10 8 16 16 C 1.39793 * 120.00096 * 175.69673 * 7 5 4 17 17 C 1.38959 * 120.07787 * 4.78395 * 16 7 5 18 18 C 1.38078 * 119.92032 * 179.79281 * 17 16 7 19 19 C 1.38306 * 120.07775 * 0.47142 * 18 17 16 20 20 C 1.38303 * 120.15897 * 359.78333 * 19 18 17 21 21 C 1.38086 * 120.07466 * 359.97438 * 20 19 18 22 22 N 1.46492 * 109.47352 * 120.00382 * 2 1 3 23 23 C 1.45758 * 117.94940 * 240.00062 * 22 2 1 24 24 C 1.52917 * 110.49024 * 160.92430 * 23 22 2 25 25 C 1.53335 * 108.67586 * 50.75529 * 24 23 22 26 26 C 1.53072 * 108.42518 * 292.46763 * 25 24 23 27 27 C 1.33353 * 117.95187 * 59.73947 * 22 2 1 28 28 O 1.21283 * 118.24205 * 2.22244 * 27 22 2 29 29 H 1.09002 * 109.47229 * 299.99500 * 1 2 3 30 30 H 1.09004 * 109.47692 * 59.99990 * 1 2 3 31 31 H 1.09003 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46771 * 52.69855 * 4 2 1 33 33 H 1.09000 * 109.46697 * 292.69742 * 4 2 1 34 34 H 0.96999 * 119.99976 * 180.02562 * 11 10 8 35 35 H 1.08007 * 120.03787 * 0.02562 * 17 16 7 36 36 H 1.07999 * 119.96077 * 180.25207 * 18 17 16 37 37 H 1.08004 * 119.92280 * 179.76641 * 19 18 17 38 38 H 1.08003 * 119.96575 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.03668 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.29750 * 281.24082 * 23 22 2 41 41 H 1.09003 * 109.30040 * 40.60529 * 23 22 2 42 42 H 1.09002 * 109.60019 * 170.50885 * 24 23 22 43 43 H 1.08997 * 109.60504 * 290.99441 * 24 23 22 44 44 H 1.09001 * 109.67736 * 52.20112 * 25 24 23 45 45 H 1.09000 * 109.67635 * 172.73475 * 25 24 23 46 46 H 1.09007 * 109.40313 * 169.02917 * 26 25 24 47 47 H 1.08993 * 109.40434 * 288.85480 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5361 -0.5668 -1.3430 6 8 4.1427 0.0067 -0.4631 7 7 4.2006 -1.0706 -2.4017 8 6 3.5289 -1.8000 -3.3491 9 1 3.0026 -2.6993 -3.0653 10 6 3.5254 -1.3820 -4.6736 11 7 2.8900 -2.0863 -5.5833 12 14 4.4237 0.1813 -5.1622 13 1 5.7850 -0.1610 -5.6470 14 1 3.6713 0.8674 -6.2429 15 1 4.5291 1.0801 -3.9848 16 6 5.5747 -0.8499 -2.5341 17 6 6.2754 -0.1974 -1.5270 18 6 7.6333 0.0151 -1.6593 19 6 8.2942 -0.4119 -2.7967 20 6 7.5990 -1.0570 -3.8034 21 6 6.2418 -1.2773 -3.6756 22 7 2.0183 -0.6906 1.1960 23 6 2.8530 0.0603 2.1255 24 6 2.8769 -0.6214 3.4942 25 6 3.2232 -2.1023 3.2991 26 6 2.0609 -2.7789 2.5681 27 6 1.6670 -1.9654 1.3690 28 8 0.9974 -2.4979 0.5093 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.5739 -0.2882 -2.1344 33 1 1.7872 -1.7796 -1.1864 34 1 2.8878 -1.7946 -6.5083 35 1 5.7592 0.1397 -0.6402 36 1 8.1794 0.5185 -0.8752 37 1 9.3557 -0.2411 -2.8992 38 1 8.1182 -1.3887 -4.6904 39 1 5.6995 -1.7807 -4.4624 40 1 3.8684 0.1164 1.7332 41 1 2.4552 1.0694 2.2325 42 1 3.6306 -0.1495 4.1246 43 1 1.8971 -0.5337 3.9636 44 1 4.1323 -2.1914 2.7044 45 1 3.3714 -2.5755 4.2698 46 1 2.3651 -3.7757 2.2486 47 1 1.2075 -2.8593 3.2412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439254518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:01 Heat of formation + Delta-G solvation = -34.187483 kcal Electronic energy + Delta-G solvation = -30189.475806 eV Core-core repulsion = 26337.421554 eV Total energy + Delta-G solvation = -3852.054252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13441 -41.32154 -39.17534 -37.38820 -36.92723 -36.18190 -34.20947 -32.40801 -31.75129 -30.94366 -30.37291 -28.64349 -27.16230 -25.32208 -24.43425 -23.58550 -23.04315 -21.93087 -21.23011 -20.00452 -19.16358 -18.14057 -17.88123 -17.60294 -17.25323 -16.75926 -16.71334 -16.12210 -15.84243 -15.39944 -15.26888 -15.18495 -14.92762 -14.84209 -14.70545 -14.37141 -14.28914 -14.10589 -13.90181 -13.75679 -13.20930 -13.05284 -12.94404 -12.74652 -12.70516 -12.52787 -12.46129 -12.24841 -12.13689 -11.80879 -11.76995 -11.71138 -11.65034 -11.27892 -10.89620 -10.31547 -10.00952 -9.67136 -9.54001 -8.83357 -8.52026 -6.60571 0.42766 0.54237 1.19454 1.24771 1.34533 1.72485 1.83432 2.07586 2.15983 2.46944 2.69524 3.08014 3.64670 3.82454 3.90924 3.95343 3.97793 4.05020 4.15371 4.18013 4.28321 4.37830 4.48872 4.57069 4.58284 4.67275 4.67833 4.73892 4.78608 4.81523 4.86189 4.91369 4.95654 5.02098 5.08365 5.13740 5.15898 5.25646 5.32574 5.42590 5.48595 5.60011 5.66494 5.70591 5.73198 5.97859 6.00083 6.40605 6.69187 6.80328 7.20385 7.30778 7.53401 8.47761 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.005101 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.738082 B = 5487.768642 C = 6675.591159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.097 0.903 4 C -0.133 4.133 5 C 0.499 3.501 6 O -0.552 6.552 7 N -0.426 5.426 8 C -0.357 4.357 9 H 0.068 0.932 10 C 0.051 3.949 11 N -0.893 5.893 12 Si 0.933 3.067 13 H -0.240 1.240 14 H -0.286 1.286 15 H -0.278 1.278 16 C 0.129 3.871 17 C -0.203 4.203 18 C -0.101 4.101 19 C -0.159 4.159 20 C -0.107 4.107 21 C -0.194 4.194 22 N -0.581 5.581 23 C 0.107 3.893 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.130 4.130 27 C 0.498 3.502 28 O -0.596 6.596 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.284 0.716 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 6.395 16.143 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.115 0.885 4 C -0.173 4.173 5 C 0.293 3.707 6 O -0.436 6.436 7 N -0.137 5.137 8 C -0.484 4.484 9 H 0.085 0.915 10 C -0.155 4.155 11 N -0.528 5.528 12 Si 0.759 3.241 13 H -0.164 1.164 14 H -0.214 1.214 15 H -0.204 1.204 16 C 0.034 3.966 17 C -0.223 4.223 18 C -0.119 4.119 19 C -0.177 4.177 20 C -0.125 4.125 21 C -0.215 4.215 22 N -0.311 5.311 23 C -0.015 4.015 24 C -0.162 4.162 25 C -0.156 4.156 26 C -0.169 4.169 27 C 0.288 3.712 28 O -0.479 6.479 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.193 0.807 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.014 6.347 15.969 17.447 hybrid contribution -0.033 -0.069 -1.381 1.383 sum 2.981 6.277 14.588 16.159 Atomic orbital electron populations 1.22089 0.93350 1.03173 1.02870 1.20874 0.94866 0.95862 0.82930 0.88464 1.21875 0.90933 1.04735 0.99764 1.21377 0.91020 0.77155 0.81179 1.90060 1.68581 1.44971 1.39954 1.41504 1.04251 1.45679 1.22230 1.18619 1.33310 1.08118 0.88391 0.91470 1.26049 0.94761 0.99039 0.95665 1.69730 1.40208 1.39744 1.03149 0.86138 0.80071 0.79750 0.78187 1.16448 1.21367 1.20374 1.18923 0.84832 0.97529 0.95346 1.22951 0.95851 1.02032 1.01443 1.21469 0.93435 0.98652 0.98337 1.21392 1.01052 1.01175 0.94119 1.21194 0.92524 0.98714 1.00079 1.21132 0.96490 1.05548 0.98336 1.47310 1.49716 1.11200 1.22883 1.21674 0.95188 0.95535 0.89095 1.21880 1.04094 0.95065 0.95183 1.21632 0.96338 0.96124 1.01476 1.21678 1.01688 0.98898 0.94684 1.20842 0.79350 0.82096 0.88909 1.90630 1.42113 1.70325 1.44825 0.90651 0.91012 0.92312 0.89348 0.88903 0.90560 0.80677 0.83140 0.82899 0.84410 0.86899 0.91844 0.89627 0.87682 0.89896 0.93086 0.87918 0.89372 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 9.07 71.98 0.65 -3.92 16 2 C 0.16 5.26 2.19 44.99 0.10 5.36 16 3 H 0.10 2.99 7.57 -2.39 -0.02 2.97 16 4 C -0.13 -5.66 3.83 29.85 0.11 -5.55 16 5 C 0.50 23.23 7.47 87.66 0.65 23.88 16 6 O -0.55 -23.85 9.66 -3.05 -0.03 -23.88 16 7 N -0.43 -21.86 2.17 -458.90 -1.00 -22.85 16 8 C -0.36 -20.10 8.05 84.02 0.68 -19.42 16 9 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16 10 C 0.05 2.83 4.49 84.91 0.38 3.21 16 11 N -0.89 -51.25 13.96 21.65 0.30 -50.95 16 12 Si 0.93 45.00 23.70 68.60 1.63 46.62 16 13 H -0.24 -10.85 6.05 99.48 0.60 -10.25 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 15 H -0.28 -14.08 6.79 99.48 0.68 -13.40 16 16 C 0.13 6.23 4.90 38.22 0.19 6.42 16 17 C -0.20 -8.56 9.06 22.40 0.20 -8.35 16 18 C -0.10 -3.38 10.04 22.25 0.22 -3.16 16 19 C -0.16 -5.04 10.04 22.30 0.22 -4.82 16 20 C -0.11 -3.97 9.90 22.25 0.22 -3.75 16 21 C -0.19 -8.99 5.64 22.41 0.13 -8.86 16 22 N -0.58 -17.52 2.29 -802.66 -1.83 -19.36 16 23 C 0.11 2.48 5.77 86.49 0.50 2.98 16 24 C -0.12 -1.96 6.02 30.68 0.18 -1.77 16 25 C -0.12 -2.14 6.03 30.73 0.19 -1.95 16 26 C -0.13 -3.03 6.03 29.70 0.18 -2.85 16 27 C 0.50 16.36 6.87 87.71 0.60 16.96 16 28 O -0.60 -24.79 12.44 -3.04 -0.04 -24.83 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.03 5.99 -2.39 -0.01 2.01 16 32 H 0.09 3.86 8.07 -2.39 -0.02 3.84 16 33 H 0.09 4.53 5.69 -2.39 -0.01 4.52 16 34 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.18 7.49 4.50 -64.62 -0.29 7.20 16 36 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 38 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 39 H 0.11 5.73 4.65 -2.91 -0.01 5.71 16 40 H 0.06 1.78 6.37 -2.39 -0.02 1.77 16 41 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 44 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 45 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 47 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -69.78 356.08 5.00 -64.78 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.56 Total: 36.06 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 5.41 Total: -5.61 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -2.53 Total: -93.16 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.07 Total: -48.70 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.63 Total: 46.62 kcal Total: -69.78 5.00 -64.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439254518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.592 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds