Wall clock time and date at job start Tue Mar 31 2020 17:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47061 * 2 1 4 4 C 1.34768 * 120.00537 * 270.00475 * 3 2 1 5 5 O 1.21282 * 120.00364 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99860 * 0.02562 * 4 3 2 7 7 C 1.53003 * 109.47107 * 180.02562 * 6 4 3 8 8 H 1.08995 * 109.47761 * 54.99590 * 7 6 4 9 9 C 1.50699 * 109.46706 * 294.99667 * 7 6 4 10 10 H 1.08004 * 120.00179 * 325.85106 * 9 7 6 11 11 C 1.37880 * 120.00222 * 145.85699 * 9 7 6 12 12 N 1.31522 * 119.99581 * 6.11438 * 11 9 7 13 13 Si 1.86792 * 120.00412 * 186.11811 * 11 9 7 14 14 H 1.48499 * 109.47498 * 89.99370 * 13 11 9 15 15 H 1.48500 * 109.47339 * 209.99590 * 13 11 9 16 16 H 1.48503 * 109.47017 * 329.99590 * 13 11 9 17 17 C 1.50702 * 109.46934 * 175.00139 * 7 6 4 18 18 C 1.38236 * 120.00474 * 63.45373 * 17 7 6 19 19 C 1.38229 * 120.00218 * 179.76860 * 18 17 7 20 20 C 1.38230 * 120.00006 * 0.47874 * 19 18 17 21 21 C 1.38243 * 119.99987 * 359.79553 * 20 19 18 22 22 C 1.38230 * 119.99685 * 359.95589 * 21 20 19 23 23 C 1.46505 * 119.99532 * 90.00720 * 3 2 1 24 24 H 1.08997 * 110.43735 * 357.45523 * 23 3 2 25 25 C 1.54627 * 110.48907 * 120.00056 * 23 3 2 26 26 C 1.54478 * 101.76770 * 143.47295 * 25 23 3 27 27 N 1.46762 * 105.54778 * 334.54135 * 26 25 23 28 28 C 1.34618 * 111.18363 * 17.05375 * 27 26 25 29 29 O 1.21280 * 124.90808 * 179.60413 * 28 27 26 30 30 H 1.09009 * 109.46885 * 299.99614 * 1 2 3 31 31 H 1.09001 * 109.47790 * 59.99218 * 1 2 3 32 32 H 1.09000 * 109.47569 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46663 * 240.00700 * 2 1 3 34 34 H 1.08996 * 109.47514 * 120.00370 * 2 1 3 35 35 H 1.09002 * 109.46878 * 299.99644 * 6 4 3 36 36 H 1.08998 * 109.47379 * 59.99945 * 6 4 3 37 37 H 0.96992 * 119.99633 * 180.02562 * 12 11 9 38 38 H 1.08004 * 119.99725 * 359.97438 * 18 17 7 39 39 H 1.07995 * 119.99893 * 180.25683 * 19 18 17 40 40 H 1.08002 * 120.00209 * 179.76866 * 20 19 18 41 41 H 1.08003 * 119.99902 * 179.97438 * 21 20 19 42 42 H 1.08007 * 119.99648 * 180.02562 * 22 21 20 43 43 H 1.08997 * 110.96648 * 25.35360 * 25 23 3 44 44 H 1.09003 * 110.96849 * 261.59543 * 25 23 3 45 45 H 1.08994 * 110.24851 * 93.58382 * 26 25 23 46 46 H 1.09004 * 110.24569 * 215.49637 * 26 25 23 47 47 H 0.97001 * 124.35020 * 197.08157 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0166 -1.1671 5 8 2.6476 3.1600 -1.1670 6 6 1.9911 1.3065 -2.4722 7 6 2.3231 2.2438 -3.6351 8 1 3.3450 2.6075 -3.5283 9 6 1.3708 3.4117 -3.6265 10 1 0.3485 3.2726 -3.3071 11 6 1.8045 4.6579 -4.0265 12 7 3.0113 4.8043 -4.5286 13 14 0.6784 6.1383 -3.8553 14 1 0.8854 6.7667 -2.5258 15 1 0.9897 7.1232 -4.9222 16 1 -0.7355 5.7019 -3.9816 17 6 2.1894 1.4962 -4.9368 18 6 0.9589 1.0013 -5.3265 19 6 0.8353 0.3197 -6.5227 20 6 1.9442 0.1243 -7.3245 21 6 3.1759 0.6143 -6.9322 22 6 3.2984 1.3003 -5.7384 23 6 2.2626 2.0717 1.2688 24 1 1.9888 1.4330 2.1086 25 6 3.7445 2.5000 1.3754 26 6 3.6282 3.8595 2.0997 27 7 2.2858 4.3607 1.7824 28 6 1.4954 3.3746 1.3188 29 8 0.3365 3.5114 0.9884 30 1 -0.3633 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.6210 0.4189 -2.5303 36 1 0.9430 1.0128 -2.5298 37 1 3.3166 5.6810 -4.8096 38 1 0.0933 1.1502 -4.6978 39 1 -0.1269 -0.0632 -6.8290 40 1 1.8484 -0.4114 -8.2574 41 1 4.0424 0.4612 -7.5585 42 1 4.2607 1.6834 -5.4321 43 1 4.1874 2.6214 0.3869 44 1 4.3145 1.7877 1.9718 45 1 3.7356 3.7240 3.1758 46 1 4.3860 4.5502 1.7296 47 1 2.0057 5.2829 1.8925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441530043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:00 Heat of formation + Delta-G solvation = -38.842397 kcal Electronic energy + Delta-G solvation = -29695.479198 eV Core-core repulsion = 25843.223093 eV Total energy + Delta-G solvation = -3852.256104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59176 -38.70283 -38.02337 -36.02056 -35.36144 -33.97061 -31.57265 -31.10016 -29.97330 -29.39422 -28.70010 -26.91333 -25.29004 -23.25105 -22.62294 -21.93311 -21.57264 -20.81069 -19.51673 -18.07465 -17.12642 -16.83360 -16.39387 -16.15412 -15.65559 -15.38368 -14.66667 -14.37320 -14.11468 -14.05547 -13.76565 -13.63817 -13.45289 -13.17130 -13.07139 -12.62987 -12.55494 -12.42636 -12.36838 -12.03554 -11.91397 -11.64598 -11.56284 -11.37074 -11.18254 -10.94654 -10.80017 -10.59219 -10.48344 -10.21823 -10.01787 -9.73050 -9.38248 -9.01800 -8.89822 -8.72868 -8.28570 -8.18632 -8.00966 -7.56690 -5.88182 -3.86094 2.32440 2.37939 2.74650 3.42427 3.44583 3.49169 3.51833 3.54516 3.68021 4.54231 4.58939 4.64050 4.78413 4.88774 5.06298 5.10996 5.21077 5.41717 5.44867 5.52411 5.57178 5.64565 5.69438 5.76422 5.82989 5.87099 5.89699 6.00205 6.11229 6.16580 6.27194 6.31355 6.41658 6.45616 6.59032 6.82803 6.85837 6.94396 7.05350 7.09641 7.27417 7.34502 7.48184 7.55843 7.90041 7.92934 7.99471 8.10395 8.44357 8.56236 9.04471 9.13584 9.75913 11.21781 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.005017 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.994306 B = 5579.963956 C = 6814.097534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 N -0.615 5.615 4 C 0.517 3.483 5 O -0.483 6.483 6 C -0.118 4.118 7 C 0.081 3.919 8 H 0.071 0.929 9 C -0.486 4.486 10 H 0.049 0.951 11 C 0.080 3.920 12 N -0.883 5.883 13 Si 0.885 3.115 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.276 1.276 17 C -0.020 4.020 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.156 4.156 21 C -0.128 4.128 22 C -0.119 4.119 23 C 0.121 3.879 24 H 0.114 0.886 25 C -0.144 4.144 26 C 0.110 3.890 27 N -0.729 5.729 28 C 0.522 3.478 29 O -0.521 6.521 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.257 0.743 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -10.953 11.233 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.353 5.353 4 C 0.306 3.694 5 O -0.353 6.353 6 C -0.158 4.158 7 C 0.062 3.938 8 H 0.089 0.911 9 C -0.524 4.524 10 H 0.067 0.933 11 C -0.123 4.123 12 N -0.520 5.520 13 Si 0.714 3.286 14 H -0.208 1.208 15 H -0.216 1.216 16 H -0.201 1.201 17 C -0.021 4.021 18 C -0.133 4.133 19 C -0.149 4.149 20 C -0.174 4.174 21 C -0.146 4.146 22 C -0.137 4.137 23 C 0.013 3.987 24 H 0.131 0.869 25 C -0.183 4.183 26 C -0.015 4.015 27 N -0.385 5.385 28 C 0.306 3.694 29 O -0.395 6.395 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.436 -10.211 10.922 15.149 hybrid contribution -0.801 1.417 0.046 1.628 sum 1.634 -8.795 10.968 14.153 Atomic orbital electron populations 1.22229 0.96066 1.01438 1.03344 1.21507 0.94533 0.82337 1.02755 1.48099 1.68892 1.14047 1.04284 1.20963 0.76831 0.87041 0.84586 1.90753 1.41923 1.16473 1.86133 1.21841 1.01801 0.98820 0.93384 1.17838 1.00919 0.90727 0.84341 0.91085 1.20675 0.96120 0.92103 1.43459 0.93250 1.24758 0.94766 0.98467 0.94275 1.69918 1.17512 1.23126 1.41464 0.86713 0.81253 0.83226 0.77453 1.20803 1.21648 1.20128 1.20734 0.91705 0.90758 0.98882 1.20952 0.97770 0.98273 0.96303 1.20967 0.97569 1.00795 0.95613 1.20788 0.93493 1.03439 0.99702 1.20974 0.96829 0.99802 0.97033 1.21070 0.98972 0.98797 0.94848 1.21460 0.95163 0.93157 0.88947 0.86868 1.23016 0.95918 0.95935 1.03430 1.21909 0.84778 0.96076 0.98746 1.45991 1.13449 1.11646 1.67405 1.20949 0.86109 0.87012 0.75306 1.90727 1.16549 1.84631 1.47628 0.92420 0.91782 0.92097 0.89893 0.91073 0.91741 0.90417 0.93314 0.86960 0.87706 0.87850 0.87694 0.86905 0.88197 0.89611 0.91598 0.90398 0.75365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.30 5.91 -4.04 -0.02 1.27 16 3 N -0.62 -9.55 2.51 -166.12 -0.42 -9.97 16 4 C 0.52 10.41 6.65 -10.99 -0.07 10.34 16 5 O -0.48 -11.73 12.34 5.56 0.07 -11.66 16 6 C -0.12 -2.33 3.50 -27.88 -0.10 -2.43 16 7 C 0.08 1.94 1.67 -92.92 -0.16 1.79 16 8 H 0.07 1.94 6.98 -51.93 -0.36 1.58 16 9 C -0.49 -13.47 6.37 -34.44 -0.22 -13.69 16 10 H 0.05 1.41 7.82 -52.48 -0.41 1.00 16 11 C 0.08 2.33 5.45 -17.82 -0.10 2.23 16 12 N -0.88 -26.23 12.87 55.43 0.71 -25.51 16 13 Si 0.88 23.44 29.54 -169.99 -5.02 18.42 16 14 H -0.28 -7.65 7.11 56.52 0.40 -7.25 16 15 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 16 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 17 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 18 C -0.11 -2.37 8.86 -39.59 -0.35 -2.72 16 19 C -0.13 -2.40 10.05 -39.59 -0.40 -2.79 16 20 C -0.16 -2.75 10.05 -39.58 -0.40 -3.14 16 21 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 22 C -0.12 -2.51 9.67 -39.59 -0.38 -2.90 16 23 C 0.12 1.68 3.42 -67.94 -0.23 1.45 16 24 H 0.11 1.19 7.88 -51.93 -0.41 0.78 16 25 C -0.14 -1.70 6.43 -25.10 -0.16 -1.87 16 26 C 0.11 1.20 7.78 -3.12 -0.02 1.17 16 27 N -0.73 -10.66 6.26 -59.15 -0.37 -11.03 16 28 C 0.52 9.29 6.39 -10.77 -0.07 9.22 16 29 O -0.52 -11.65 18.02 5.56 0.10 -11.55 16 30 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.06 0.94 7.22 -51.93 -0.37 0.57 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.91 6.44 -51.93 -0.33 0.57 16 34 H 0.07 0.61 7.97 -51.93 -0.41 0.19 16 35 H 0.06 1.09 7.40 -51.93 -0.38 0.70 16 36 H 0.08 1.48 6.82 -51.93 -0.35 1.13 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 38 H 0.11 2.28 7.76 -52.48 -0.41 1.87 16 39 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 42 H 0.11 2.40 7.95 -52.48 -0.42 1.99 16 43 H 0.10 1.52 6.38 -51.93 -0.33 1.19 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.41 5.59 8.96 -40.82 -0.37 5.23 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -36.16 382.86 -9.44 -45.60 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.08 Total: 7.44 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.20 Total: -7.50 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.07 Total: -46.51 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.16 -9.44 -45.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441530043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.756 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds