Wall clock time and date at job start Tue Mar 31 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47061 * 2 1 4 4 C 1.34768 * 120.00537 * 270.00475 * 3 2 1 5 5 O 1.21282 * 120.00364 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99860 * 0.02562 * 4 3 2 7 7 C 1.53003 * 109.47107 * 180.02562 * 6 4 3 8 8 H 1.08995 * 109.47761 * 54.99590 * 7 6 4 9 9 C 1.50699 * 109.46706 * 294.99667 * 7 6 4 10 10 H 1.08004 * 120.00179 * 325.85106 * 9 7 6 11 11 C 1.37880 * 120.00222 * 145.85699 * 9 7 6 12 12 N 1.31522 * 119.99581 * 6.11438 * 11 9 7 13 13 Si 1.86792 * 120.00412 * 186.11811 * 11 9 7 14 14 H 1.48499 * 109.47498 * 89.99370 * 13 11 9 15 15 H 1.48500 * 109.47339 * 209.99590 * 13 11 9 16 16 H 1.48503 * 109.47017 * 329.99590 * 13 11 9 17 17 C 1.50702 * 109.46934 * 175.00139 * 7 6 4 18 18 C 1.38236 * 120.00474 * 63.45373 * 17 7 6 19 19 C 1.38229 * 120.00218 * 179.76860 * 18 17 7 20 20 C 1.38230 * 120.00006 * 0.47874 * 19 18 17 21 21 C 1.38243 * 119.99987 * 359.79553 * 20 19 18 22 22 C 1.38230 * 119.99685 * 359.95589 * 21 20 19 23 23 C 1.46505 * 119.99532 * 90.00720 * 3 2 1 24 24 H 1.08997 * 110.43735 * 357.45523 * 23 3 2 25 25 C 1.54627 * 110.48907 * 120.00056 * 23 3 2 26 26 C 1.54478 * 101.76770 * 143.47295 * 25 23 3 27 27 N 1.46762 * 105.54778 * 334.54135 * 26 25 23 28 28 C 1.34618 * 111.18363 * 17.05375 * 27 26 25 29 29 O 1.21280 * 124.90808 * 179.60413 * 28 27 26 30 30 H 1.09009 * 109.46885 * 299.99614 * 1 2 3 31 31 H 1.09001 * 109.47790 * 59.99218 * 1 2 3 32 32 H 1.09000 * 109.47569 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46663 * 240.00700 * 2 1 3 34 34 H 1.08996 * 109.47514 * 120.00370 * 2 1 3 35 35 H 1.09002 * 109.46878 * 299.99644 * 6 4 3 36 36 H 1.08998 * 109.47379 * 59.99945 * 6 4 3 37 37 H 0.96992 * 119.99633 * 180.02562 * 12 11 9 38 38 H 1.08004 * 119.99725 * 359.97438 * 18 17 7 39 39 H 1.07995 * 119.99893 * 180.25683 * 19 18 17 40 40 H 1.08002 * 120.00209 * 179.76866 * 20 19 18 41 41 H 1.08003 * 119.99902 * 179.97438 * 21 20 19 42 42 H 1.08007 * 119.99648 * 180.02562 * 22 21 20 43 43 H 1.08997 * 110.96648 * 25.35360 * 25 23 3 44 44 H 1.09003 * 110.96849 * 261.59543 * 25 23 3 45 45 H 1.08994 * 110.24851 * 93.58382 * 26 25 23 46 46 H 1.09004 * 110.24569 * 215.49637 * 26 25 23 47 47 H 0.97001 * 124.35020 * 197.08157 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0166 -1.1671 5 8 2.6476 3.1600 -1.1670 6 6 1.9911 1.3065 -2.4722 7 6 2.3231 2.2438 -3.6351 8 1 3.3450 2.6075 -3.5283 9 6 1.3708 3.4117 -3.6265 10 1 0.3485 3.2726 -3.3071 11 6 1.8045 4.6579 -4.0265 12 7 3.0113 4.8043 -4.5286 13 14 0.6784 6.1383 -3.8553 14 1 0.8854 6.7667 -2.5258 15 1 0.9897 7.1232 -4.9222 16 1 -0.7355 5.7019 -3.9816 17 6 2.1894 1.4962 -4.9368 18 6 0.9589 1.0013 -5.3265 19 6 0.8353 0.3197 -6.5227 20 6 1.9442 0.1243 -7.3245 21 6 3.1759 0.6143 -6.9322 22 6 3.2984 1.3003 -5.7384 23 6 2.2626 2.0717 1.2688 24 1 1.9888 1.4330 2.1086 25 6 3.7445 2.5000 1.3754 26 6 3.6282 3.8595 2.0997 27 7 2.2858 4.3607 1.7824 28 6 1.4954 3.3746 1.3188 29 8 0.3365 3.5114 0.9884 30 1 -0.3633 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.6210 0.4189 -2.5303 36 1 0.9430 1.0128 -2.5298 37 1 3.3166 5.6810 -4.8096 38 1 0.0933 1.1502 -4.6978 39 1 -0.1269 -0.0632 -6.8290 40 1 1.8484 -0.4114 -8.2574 41 1 4.0424 0.4612 -7.5585 42 1 4.2607 1.6834 -5.4321 43 1 4.1874 2.6214 0.3869 44 1 4.3145 1.7877 1.9718 45 1 3.7356 3.7240 3.1758 46 1 4.3860 4.5502 1.7296 47 1 2.0057 5.2829 1.8925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441530043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:59 Heat of formation + Delta-G solvation = -63.774045 kcal Electronic energy + Delta-G solvation = -29696.560315 eV Core-core repulsion = 25843.223093 eV Total energy + Delta-G solvation = -3853.337222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.86718 -40.22073 -39.50570 -37.36070 -36.66094 -35.79870 -33.46812 -32.31986 -31.49683 -30.66688 -30.05952 -28.27914 -27.09392 -24.75736 -23.91640 -23.16383 -22.94113 -22.11068 -21.14212 -19.49768 -18.55115 -18.36876 -18.00943 -17.48491 -17.11653 -16.62748 -16.49714 -16.10471 -15.58018 -15.45934 -15.25329 -14.84641 -14.65089 -14.63870 -14.39584 -14.13813 -14.01556 -13.75894 -13.58575 -13.50143 -13.30720 -13.18158 -13.06165 -12.91930 -12.58986 -12.52842 -12.40794 -12.17971 -11.90060 -11.81873 -11.67100 -11.29749 -11.09538 -10.97423 -10.59433 -10.30900 -9.98163 -9.53687 -9.48360 -9.18643 -8.09120 -6.08666 0.78461 0.84511 1.24871 1.30269 1.36251 1.44649 1.98622 2.24286 2.40347 2.54895 3.17477 3.32610 3.46387 3.63727 3.86256 4.09768 4.13959 4.21240 4.25463 4.36287 4.40867 4.42292 4.48045 4.54537 4.59974 4.69427 4.73216 4.76616 4.88114 4.93934 4.97151 4.99584 5.04132 5.19382 5.22805 5.37907 5.45826 5.52630 5.61592 5.72769 5.76909 5.84267 5.92588 5.96176 6.05469 6.16407 6.40843 6.47019 6.56321 6.97341 7.27769 7.52418 7.56505 9.00036 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.005017 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.994306 B = 5579.963956 C = 6814.097534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 N -0.608 5.608 4 C 0.510 3.490 5 O -0.537 6.537 6 C -0.111 4.111 7 C 0.087 3.913 8 H 0.029 0.971 9 C -0.477 4.477 10 H 0.030 0.970 11 C 0.033 3.967 12 N -0.909 5.909 13 Si 0.923 3.077 14 H -0.296 1.296 15 H -0.278 1.278 16 H -0.274 1.274 17 C -0.045 4.045 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.146 4.146 21 C -0.126 4.126 22 C -0.139 4.139 23 C 0.119 3.881 24 H 0.159 0.841 25 C -0.136 4.136 26 C 0.107 3.893 27 N -0.729 5.729 28 C 0.502 3.498 29 O -0.584 6.584 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.254 0.746 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.135 0.865 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -14.216 11.679 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.344 5.344 4 C 0.300 3.700 5 O -0.412 6.412 6 C -0.151 4.151 7 C 0.068 3.932 8 H 0.048 0.952 9 C -0.515 4.515 10 H 0.048 0.952 11 C -0.166 4.166 12 N -0.549 5.549 13 Si 0.752 3.248 14 H -0.224 1.224 15 H -0.204 1.204 16 H -0.199 1.199 17 C -0.045 4.045 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.158 4.158 23 C 0.011 3.989 24 H 0.176 0.824 25 C -0.174 4.174 26 C -0.017 4.017 27 N -0.383 5.383 28 C 0.288 3.712 29 O -0.464 6.464 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.124 0.876 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.153 0.847 45 H 0.131 0.869 46 H 0.095 0.905 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.788 -13.514 11.404 17.901 hybrid contribution -0.909 2.333 -0.060 2.504 sum 1.879 -11.181 11.344 16.039 Atomic orbital electron populations 1.22187 0.96617 1.02812 1.00985 1.21891 0.94003 0.80303 1.05531 1.48053 1.67337 1.15332 1.03630 1.21029 0.76448 0.86502 0.86056 1.90726 1.44668 1.18681 1.87144 1.21679 1.02462 0.98812 0.92117 1.17586 0.97387 0.90841 0.87372 0.95245 1.20852 0.95646 0.93616 1.41433 0.95194 1.25277 0.95799 1.00350 0.95145 1.70011 1.18510 1.23004 1.43356 0.86111 0.80278 0.81672 0.76785 1.22372 1.20375 1.19876 1.20535 0.93162 0.92629 0.98223 1.20984 0.96710 0.99339 0.97729 1.21335 0.99494 0.99320 0.94271 1.21260 0.92414 1.02096 1.00649 1.21298 0.98677 0.98455 0.95964 1.21087 0.98114 1.00259 0.96314 1.21814 0.95855 0.91962 0.89253 0.82370 1.23037 0.94542 0.97489 1.02371 1.22250 0.82554 0.95495 1.01396 1.46230 1.14699 1.11427 1.65976 1.21799 0.85746 0.89141 0.74490 1.90676 1.19259 1.85933 1.50537 0.93580 0.95340 0.88774 0.89015 0.86381 0.88776 0.90036 0.93722 0.87601 0.84403 0.83779 0.84790 0.88481 0.92130 0.84656 0.86863 0.90450 0.75505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.14 5.91 86.38 0.51 2.65 16 3 N -0.61 -18.40 2.51 -797.88 -2.00 -20.39 16 4 C 0.51 21.27 6.65 87.66 0.58 21.85 16 5 O -0.54 -27.69 12.34 -3.04 -0.04 -27.73 16 6 C -0.11 -4.50 3.50 29.85 0.10 -4.39 16 7 C 0.09 4.42 1.67 -12.28 -0.02 4.40 16 8 H 0.03 1.72 6.98 -2.39 -0.02 1.70 16 9 C -0.48 -27.88 6.37 25.60 0.16 -27.72 16 10 H 0.03 1.81 7.82 -2.91 -0.02 1.79 16 11 C 0.03 2.03 5.45 84.65 0.46 2.49 16 12 N -0.91 -56.78 12.87 21.45 0.28 -56.50 16 13 Si 0.92 50.19 29.54 68.60 2.03 52.21 16 14 H -0.30 -16.67 7.11 99.48 0.71 -15.96 16 15 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 16 H -0.27 -14.59 7.11 99.48 0.71 -13.88 16 17 C -0.04 -2.05 4.77 -19.86 -0.09 -2.14 16 18 C -0.13 -5.29 8.86 22.27 0.20 -5.09 16 19 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 20 C -0.15 -4.59 10.05 22.27 0.22 -4.37 16 21 C -0.13 -4.40 10.05 22.27 0.22 -4.17 16 22 C -0.14 -5.97 9.67 22.27 0.22 -5.76 16 23 C 0.12 3.10 3.42 44.98 0.15 3.25 16 24 H 0.16 2.67 7.88 -2.39 -0.02 2.65 16 25 C -0.14 -2.93 6.43 31.65 0.20 -2.73 16 26 C 0.11 2.13 7.78 86.83 0.68 2.80 16 27 N -0.73 -21.54 6.26 -459.54 -2.87 -24.42 16 28 C 0.50 18.21 6.39 87.87 0.56 18.77 16 29 O -0.58 -27.51 18.02 -3.03 -0.05 -27.57 16 30 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.03 0.84 7.22 -2.39 -0.02 0.82 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.75 6.44 -2.39 -0.02 1.74 16 34 H 0.12 1.40 7.97 -2.39 -0.02 1.38 16 35 H 0.09 3.17 7.40 -2.39 -0.02 3.16 16 36 H 0.08 3.22 6.82 -2.39 -0.02 3.20 16 37 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.11 4.36 7.76 -2.91 -0.02 4.34 16 39 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.10 4.35 7.95 -2.91 -0.02 4.32 16 43 H 0.06 1.85 6.38 -2.39 -0.02 1.83 16 44 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.41 11.65 8.96 -92.71 -0.83 10.82 16 Total: -1.00 -87.71 382.86 2.61 -85.10 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.15 Total: 26.61 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.12 Total: -7.31 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.60 Total: -101.32 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -0.09 Total: -55.30 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.03 Total: 52.21 kcal Total: -87.71 2.61 -85.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441530043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.327 kcal (2) G-P(sol) polarization free energy of solvation -87.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds