Wall clock time and date at job start Tue Mar 31 2020 17:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46788 * 2 1 4 4 C 1.46501 * 119.99851 * 274.84021 * 3 2 1 5 5 C 1.53001 * 109.46902 * 270.00285 * 4 3 2 6 6 O 1.42898 * 109.47456 * 65.00238 * 5 4 3 7 7 C 1.34776 * 120.00217 * 94.84179 * 3 2 1 8 8 O 1.21666 * 119.99895 * 185.68878 * 7 3 2 9 9 C 1.46906 * 119.99785 * 5.68565 * 7 3 2 10 10 C 1.36380 * 126.76856 * 54.15450 * 9 7 3 11 11 N 1.35472 * 109.76662 * 179.97438 * 10 9 7 12 12 C 1.46506 * 124.78467 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46809 * 265.02429 * 12 11 10 14 14 C 1.50701 * 109.46679 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00342 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99694 * 179.72021 * 14 13 12 17 17 N 1.31515 * 120.00191 * 0.27827 * 16 14 13 18 18 Si 1.86800 * 120.00103 * 180.27552 * 16 14 13 19 19 H 1.48502 * 109.46891 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47377 * 120.00466 * 18 16 14 21 21 H 1.48506 * 109.46988 * 240.00338 * 18 16 14 22 22 C 1.37962 * 110.43297 * 0.26001 * 11 10 9 23 23 C 1.39116 * 133.19048 * 180.47803 * 22 11 10 24 24 C 1.37767 * 119.92890 * 179.57054 * 23 22 11 25 25 C 1.38753 * 120.63898 * 359.72070 * 24 23 22 26 26 C 1.37756 * 120.29842 * 359.97438 * 25 24 23 27 27 C 1.39278 * 119.67197 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47171 * 60.00446 * 1 2 3 29 29 H 1.09007 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47080 * 300.00053 * 1 2 3 31 31 H 1.08995 * 109.47080 * 239.99947 * 2 1 3 32 32 H 1.08999 * 109.47171 * 119.99554 * 2 1 3 33 33 H 1.08997 * 109.47002 * 29.99967 * 4 3 2 34 34 H 1.08990 * 109.47207 * 150.00265 * 4 3 2 35 35 H 1.08997 * 109.46890 * 184.99854 * 5 4 3 36 36 H 1.09000 * 109.47005 * 304.99791 * 5 4 3 37 37 H 0.96700 * 114.00312 * 180.02562 * 6 5 4 38 38 H 1.07990 * 125.11309 * 359.95644 * 10 9 7 39 39 H 1.09000 * 109.47240 * 145.02532 * 12 11 10 40 40 H 1.09002 * 109.47095 * 25.01829 * 12 11 10 41 41 H 1.08991 * 109.47290 * 59.99759 * 13 12 11 42 42 H 1.09002 * 109.46802 * 299.99580 * 13 12 11 43 43 H 0.97001 * 120.00408 * 179.97438 * 17 16 14 44 44 H 1.08001 * 120.03520 * 359.28963 * 23 22 11 45 45 H 1.08004 * 119.68338 * 179.69237 * 24 23 22 46 46 H 1.07999 * 119.85302 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.16820 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.5665 1.8812 -1.8260 6 8 3.7287 0.5018 -2.1621 7 6 2.3358 1.9838 1.1630 8 8 2.6419 3.1613 1.1743 9 6 2.3122 1.2188 2.4169 10 6 2.9688 0.0514 2.6735 11 7 2.7057 -0.3538 3.9391 12 6 3.2433 -1.5686 4.5567 13 6 2.2340 -2.7082 4.4034 14 6 2.7873 -3.9581 5.0380 15 1 3.7613 -3.9412 5.5045 16 6 2.0475 -5.1215 5.0288 17 7 0.8613 -5.1420 4.4613 18 14 2.7301 -6.6687 5.8222 19 1 4.0735 -6.3839 6.3873 20 1 1.8199 -7.1105 6.9092 21 1 2.8392 -7.7417 4.8013 22 6 1.8558 0.5362 4.5628 23 6 1.2984 0.5874 5.8364 24 6 0.4703 1.6325 6.1828 25 6 0.1886 2.6426 5.2742 26 6 0.7360 2.6131 4.0103 27 6 1.5749 1.5624 3.6467 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.4220 1.7441 -1.9778 34 1 2.0066 3.1724 -1.0911 35 1 3.7033 2.4912 -2.7190 36 1 4.3069 2.1623 -1.0771 37 1 4.5985 0.2850 -2.5248 38 1 3.6029 -0.4715 1.9730 39 1 3.4281 -1.3869 5.6154 40 1 4.1776 -1.8425 4.0665 41 1 2.0492 -2.8900 3.3447 42 1 1.2997 -2.4344 4.8935 43 1 0.3409 -5.9606 4.4544 44 1 1.5109 -0.1937 6.5513 45 1 0.0357 1.6657 7.1709 46 1 -0.4626 3.4557 5.5590 47 1 0.5150 3.4002 3.3046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443952624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:55 Heat of formation + Delta-G solvation = -31.255800 kcal Electronic energy + Delta-G solvation = -28630.423260 eV Core-core repulsion = 24778.496136 eV Total energy + Delta-G solvation = -3851.927125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.25186 -39.45835 -37.04483 -36.85977 -35.47346 -34.05269 -32.42383 -31.21052 -30.43247 -29.32960 -28.85159 -27.96514 -25.21345 -23.56679 -23.31467 -22.51980 -21.74361 -21.33339 -20.06030 -18.68630 -17.74734 -17.02053 -16.68027 -16.48594 -16.24399 -15.47893 -15.29385 -14.83635 -14.75554 -14.39809 -14.13910 -13.83212 -13.67480 -13.52938 -13.50379 -13.23325 -12.89858 -12.67151 -12.45647 -12.27130 -12.05944 -11.82075 -11.80013 -11.47163 -11.37949 -11.21918 -11.10206 -10.90132 -10.67714 -10.61295 -10.29378 -10.26353 -9.93662 -9.63620 -9.41435 -9.19818 -8.59246 -8.55770 -7.89681 -7.26848 -6.19481 -4.25519 1.35295 1.91305 2.43566 2.99757 3.19412 3.19855 3.28642 3.31187 3.42400 4.09352 4.23536 4.30735 4.80132 4.94509 4.98454 5.02406 5.05264 5.15272 5.17043 5.21266 5.32646 5.38996 5.46240 5.50789 5.64412 5.65708 5.68585 5.81855 5.89000 5.92732 5.98698 6.00591 6.04538 6.06719 6.32812 6.34114 6.38481 6.65557 6.74188 6.87986 6.96277 7.05000 7.34676 7.37932 7.40946 7.54388 7.58167 7.59275 7.79176 8.11239 8.39950 8.80319 9.40534 10.91283 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.003890 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.515963 B = 7195.780275 C = 9091.220706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.604 5.604 4 C 0.118 3.882 5 C 0.060 3.940 6 O -0.569 6.569 7 C 0.602 3.398 8 O -0.549 6.549 9 C -0.247 4.247 10 C 0.114 3.886 11 N -0.453 5.453 12 C 0.102 3.898 13 C 0.013 3.987 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.097 3.903 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.144 4.144 26 C -0.078 4.078 27 C -0.067 4.067 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.377 0.623 38 H 0.171 0.829 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 12.851 -8.995 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.337 5.337 4 C -0.006 4.006 5 C -0.019 4.019 6 O -0.374 6.374 7 C 0.391 3.609 8 O -0.427 6.427 9 C -0.258 4.258 10 C -0.020 4.020 11 N -0.130 5.130 12 C -0.017 4.017 13 C -0.025 4.025 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.009 4.009 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.163 4.163 26 C -0.097 4.097 27 C -0.071 4.071 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.224 0.776 38 H 0.188 0.812 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.604 13.019 -8.644 15.710 hybrid contribution 0.851 -1.098 0.118 1.394 sum 2.456 11.922 -8.527 14.861 Atomic orbital electron populations 1.22137 0.96070 1.02434 1.01871 1.21735 0.94294 0.81792 1.04158 1.47821 1.65567 1.14877 1.05404 1.21445 0.95552 0.98310 0.85248 1.22660 0.98209 0.82734 0.98326 1.86496 1.38893 1.25934 1.86116 1.17432 0.75209 0.85827 0.82386 1.90732 1.48936 1.16106 1.86917 1.19605 1.11630 0.99813 0.94757 1.21870 0.99563 0.93824 0.86710 1.44312 1.37483 1.20430 1.10751 1.22445 0.99083 0.82293 0.97904 1.19450 0.93893 0.90793 0.98340 1.21025 1.03569 0.94442 1.37855 0.92254 1.24983 0.94747 0.99077 0.95149 1.69972 1.11118 1.27978 1.43446 0.86482 0.79137 0.82910 0.79176 1.19619 1.20834 1.20830 1.18219 0.96676 0.91184 0.94807 1.20149 0.99485 0.99811 0.93664 1.20727 0.98632 0.94176 0.99472 1.20810 1.02166 0.99573 0.93791 1.20379 0.96314 0.96725 0.96256 1.18655 1.00466 0.95883 0.92127 0.93000 0.91356 0.92349 0.89687 0.89481 0.89971 0.88522 0.92977 0.93256 0.77645 0.81208 0.90279 0.89997 0.95826 0.95659 0.92717 0.85844 0.86011 0.86377 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.10 1.33 5.92 -4.04 -0.02 1.30 16 3 N -0.60 -8.12 2.44 -175.15 -0.43 -8.55 16 4 C 0.12 1.29 5.88 -4.04 -0.02 1.27 16 5 C 0.06 0.57 7.39 37.16 0.27 0.84 16 6 O -0.57 -5.44 12.41 -35.23 -0.44 -5.87 16 7 C 0.60 9.88 7.54 -12.75 -0.10 9.78 16 8 O -0.55 -10.34 16.66 5.22 0.09 -10.26 16 9 C -0.25 -4.21 5.20 -103.31 -0.54 -4.75 16 10 C 0.11 1.86 9.10 -16.61 -0.15 1.71 16 11 N -0.45 -8.08 2.74 -114.21 -0.31 -8.39 16 12 C 0.10 1.91 5.89 -4.04 -0.02 1.89 16 13 C 0.01 0.30 5.30 -27.88 -0.15 0.16 16 14 C -0.53 -13.75 9.11 -34.44 -0.31 -14.06 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 18 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.10 1.76 6.79 -83.97 -0.57 1.19 16 23 C -0.11 -1.87 9.97 -39.43 -0.39 -2.26 16 24 C -0.11 -1.62 10.01 -39.56 -0.40 -2.01 16 25 C -0.14 -2.07 10.03 -39.57 -0.40 -2.47 16 26 C -0.08 -1.27 10.09 -39.37 -0.40 -1.67 16 27 C -0.07 -1.19 6.36 -104.95 -0.67 -1.86 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.03 7.04 -51.93 -0.37 0.67 16 32 H 0.09 1.24 4.66 -51.93 -0.24 1.00 16 33 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.10 1.09 7.35 -51.93 -0.38 0.71 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.38 2.07 9.12 45.56 0.42 2.48 16 38 H 0.17 2.33 7.73 -52.49 -0.41 1.92 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 46 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -32.23 394.17 -9.45 -41.68 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.43 Total: 5.64 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -3.58 Total: -11.06 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.00 Total: -41.46 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.35 Total: -16.13 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.23 -9.45 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443952624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.425 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds