Wall clock time and date at job start Tue Mar 31 2020 17:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46788 * 2 1 4 4 C 1.46501 * 119.99851 * 274.84021 * 3 2 1 5 5 C 1.53001 * 109.46902 * 270.00285 * 4 3 2 6 6 O 1.42898 * 109.47456 * 65.00238 * 5 4 3 7 7 C 1.34776 * 120.00217 * 94.84179 * 3 2 1 8 8 O 1.21666 * 119.99895 * 185.68878 * 7 3 2 9 9 C 1.46906 * 119.99785 * 5.68565 * 7 3 2 10 10 C 1.36380 * 126.76856 * 54.15450 * 9 7 3 11 11 N 1.35472 * 109.76662 * 179.97438 * 10 9 7 12 12 C 1.46506 * 124.78467 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46809 * 265.02429 * 12 11 10 14 14 C 1.50701 * 109.46679 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00342 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99694 * 179.72021 * 14 13 12 17 17 N 1.31515 * 120.00191 * 0.27827 * 16 14 13 18 18 Si 1.86800 * 120.00103 * 180.27552 * 16 14 13 19 19 H 1.48502 * 109.46891 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47377 * 120.00466 * 18 16 14 21 21 H 1.48506 * 109.46988 * 240.00338 * 18 16 14 22 22 C 1.37962 * 110.43297 * 0.26001 * 11 10 9 23 23 C 1.39116 * 133.19048 * 180.47803 * 22 11 10 24 24 C 1.37767 * 119.92890 * 179.57054 * 23 22 11 25 25 C 1.38753 * 120.63898 * 359.72070 * 24 23 22 26 26 C 1.37756 * 120.29842 * 359.97438 * 25 24 23 27 27 C 1.39278 * 119.67197 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47171 * 60.00446 * 1 2 3 29 29 H 1.09007 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47080 * 300.00053 * 1 2 3 31 31 H 1.08995 * 109.47080 * 239.99947 * 2 1 3 32 32 H 1.08999 * 109.47171 * 119.99554 * 2 1 3 33 33 H 1.08997 * 109.47002 * 29.99967 * 4 3 2 34 34 H 1.08990 * 109.47207 * 150.00265 * 4 3 2 35 35 H 1.08997 * 109.46890 * 184.99854 * 5 4 3 36 36 H 1.09000 * 109.47005 * 304.99791 * 5 4 3 37 37 H 0.96700 * 114.00312 * 180.02562 * 6 5 4 38 38 H 1.07990 * 125.11309 * 359.95644 * 10 9 7 39 39 H 1.09000 * 109.47240 * 145.02532 * 12 11 10 40 40 H 1.09002 * 109.47095 * 25.01829 * 12 11 10 41 41 H 1.08991 * 109.47290 * 59.99759 * 13 12 11 42 42 H 1.09002 * 109.46802 * 299.99580 * 13 12 11 43 43 H 0.97001 * 120.00408 * 179.97438 * 17 16 14 44 44 H 1.08001 * 120.03520 * 359.28963 * 23 22 11 45 45 H 1.08004 * 119.68338 * 179.69237 * 24 23 22 46 46 H 1.07999 * 119.85302 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.16820 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.5665 1.8812 -1.8260 6 8 3.7287 0.5018 -2.1621 7 6 2.3358 1.9838 1.1630 8 8 2.6419 3.1613 1.1743 9 6 2.3122 1.2188 2.4169 10 6 2.9688 0.0514 2.6735 11 7 2.7057 -0.3538 3.9391 12 6 3.2433 -1.5686 4.5567 13 6 2.2340 -2.7082 4.4034 14 6 2.7873 -3.9581 5.0380 15 1 3.7613 -3.9412 5.5045 16 6 2.0475 -5.1215 5.0288 17 7 0.8613 -5.1420 4.4613 18 14 2.7301 -6.6687 5.8222 19 1 4.0735 -6.3839 6.3873 20 1 1.8199 -7.1105 6.9092 21 1 2.8392 -7.7417 4.8013 22 6 1.8558 0.5362 4.5628 23 6 1.2984 0.5874 5.8364 24 6 0.4703 1.6325 6.1828 25 6 0.1886 2.6426 5.2742 26 6 0.7360 2.6131 4.0103 27 6 1.5749 1.5624 3.6467 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.4220 1.7441 -1.9778 34 1 2.0066 3.1724 -1.0911 35 1 3.7033 2.4912 -2.7190 36 1 4.3069 2.1623 -1.0771 37 1 4.5985 0.2850 -2.5248 38 1 3.6029 -0.4715 1.9730 39 1 3.4281 -1.3869 5.6154 40 1 4.1776 -1.8425 4.0665 41 1 2.0492 -2.8900 3.3447 42 1 1.2997 -2.4344 4.8935 43 1 0.3409 -5.9606 4.4544 44 1 1.5109 -0.1937 6.5513 45 1 0.0357 1.6657 7.1709 46 1 -0.4626 3.4557 5.5590 47 1 0.5150 3.4002 3.3046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443952624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:54 Heat of formation + Delta-G solvation = -50.039582 kcal Electronic energy + Delta-G solvation = -28631.237786 eV Core-core repulsion = 24778.496136 eV Total energy + Delta-G solvation = -3852.741651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.54713 -40.64121 -38.14088 -37.92577 -36.55442 -35.80983 -34.06054 -32.25655 -31.85928 -30.50304 -30.26345 -29.17096 -26.89238 -24.80153 -24.31944 -23.91181 -23.24796 -22.48138 -21.45343 -19.85179 -18.75859 -18.58177 -17.99214 -17.68526 -17.43385 -16.78781 -16.63901 -16.46647 -15.90523 -15.67516 -15.36181 -15.15639 -14.91671 -14.62844 -14.59148 -14.43704 -14.35973 -14.24162 -13.72370 -13.58271 -13.36073 -13.02736 -12.91620 -12.82724 -12.80902 -12.56229 -12.36475 -12.34949 -12.05361 -11.97889 -11.90497 -11.61214 -11.37514 -11.12457 -10.81424 -10.62650 -10.52840 -9.69597 -9.17944 -8.58436 -8.23794 -6.37144 0.08690 0.65871 1.14339 1.41058 1.42690 1.54522 1.80042 1.87611 2.21781 2.40643 2.96998 3.10907 3.40118 3.66447 3.70997 3.73848 4.00470 4.07622 4.14979 4.20870 4.26810 4.30007 4.38630 4.43706 4.46413 4.53443 4.58282 4.63374 4.69173 4.71124 4.77938 4.83085 4.85042 4.95165 4.98965 5.09961 5.28499 5.37884 5.40034 5.53065 5.59674 5.64372 5.70612 5.71583 5.85561 6.05005 6.24760 6.30401 6.36830 6.78864 6.90511 7.17024 7.33709 8.87542 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.003890 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.515963 B = 7195.780275 C = 9091.220706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.109 3.891 5 C 0.067 3.933 6 O -0.584 6.584 7 C 0.601 3.399 8 O -0.580 6.580 9 C -0.257 4.257 10 C 0.114 3.886 11 N -0.461 5.461 12 C 0.119 3.881 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.071 0.929 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.258 1.258 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.072 3.928 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.135 4.135 26 C -0.093 4.093 27 C -0.089 4.089 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.395 0.605 38 H 0.192 0.808 39 H 0.086 0.914 40 H 0.102 0.898 41 H -0.002 1.002 42 H -0.009 1.009 43 H 0.264 0.736 44 H 0.121 0.879 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 13.001 -9.184 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.326 5.326 4 C -0.013 4.013 5 C -0.012 4.012 6 O -0.392 6.392 7 C 0.390 3.610 8 O -0.461 6.461 9 C -0.268 4.268 10 C -0.019 4.019 11 N -0.139 5.139 12 C -0.001 4.001 13 C -0.013 4.013 14 C -0.580 4.580 15 H 0.089 0.911 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.789 3.211 19 H -0.182 1.182 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.033 4.033 23 C -0.152 4.152 24 C -0.123 4.123 25 C -0.154 4.154 26 C -0.112 4.112 27 C -0.094 4.094 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.244 0.756 38 H 0.209 0.791 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.017 0.983 42 H 0.010 0.990 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.172 0.828 46 H 0.171 0.829 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.232 13.170 -8.865 16.031 hybrid contribution 0.590 -1.089 0.143 1.247 sum 2.823 12.081 -8.721 15.165 Atomic orbital electron populations 1.22083 0.95732 1.02488 1.01671 1.21728 0.94480 0.81431 1.03985 1.47841 1.64218 1.14976 1.05551 1.21703 0.97351 0.97923 0.84296 1.22539 0.96437 0.83290 0.98945 1.86436 1.40561 1.25846 1.86338 1.17393 0.75211 0.85398 0.82951 1.90704 1.50768 1.17207 1.87386 1.19791 1.11703 1.00153 0.95122 1.22201 0.99506 0.93752 0.86398 1.44223 1.38146 1.20235 1.11329 1.22110 0.98071 0.81144 0.98802 1.19218 0.93789 0.92319 0.95980 1.21480 1.03955 0.95214 1.37367 0.91094 1.25896 0.94955 1.02580 0.95700 1.70109 1.12657 1.28903 1.45140 0.85404 0.78884 0.78714 0.78081 1.18172 1.20784 1.20542 1.18548 0.97440 0.91671 0.95632 1.20379 1.00601 1.00845 0.93387 1.21135 0.97251 0.93040 1.00855 1.21212 1.01388 1.00076 0.92694 1.20608 0.96595 0.96587 0.97393 1.18988 1.01301 0.96535 0.92562 0.91175 0.91197 0.94475 0.88322 0.91056 0.88145 0.88967 0.90157 0.94939 0.75555 0.79103 0.89611 0.87988 0.98338 0.99040 0.92707 0.86097 0.82821 0.82911 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.27 16 2 C 0.11 2.70 5.92 86.38 0.51 3.21 16 3 N -0.59 -15.76 2.44 -826.28 -2.01 -17.77 16 4 C 0.11 2.27 5.88 86.38 0.51 2.77 16 5 C 0.07 1.15 7.39 71.98 0.53 1.69 16 6 O -0.58 -10.00 12.41 -148.98 -1.85 -11.85 16 7 C 0.60 19.97 7.54 86.51 0.65 20.62 16 8 O -0.58 -22.20 16.66 -4.24 -0.07 -22.27 16 9 C -0.26 -8.95 5.20 -19.01 -0.10 -9.05 16 10 C 0.11 3.78 9.10 83.70 0.76 4.54 16 11 N -0.46 -16.80 2.74 -515.26 -1.41 -18.21 16 12 C 0.12 4.46 5.89 86.38 0.51 4.97 16 13 C 0.02 1.20 5.30 29.85 0.16 1.36 16 14 C -0.54 -28.19 9.11 25.60 0.23 -27.95 16 15 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 18 Si 0.96 41.67 29.54 68.60 2.03 43.70 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 C 0.07 2.68 6.79 38.92 0.26 2.95 16 23 C -0.13 -4.47 9.97 22.37 0.22 -4.24 16 24 C -0.10 -2.89 10.01 22.28 0.22 -2.67 16 25 C -0.14 -3.66 10.03 22.28 0.22 -3.44 16 26 C -0.09 -3.02 10.09 22.41 0.23 -2.79 16 27 C -0.09 -3.26 6.36 -20.07 -0.13 -3.39 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 2.27 7.04 -2.39 -0.02 2.25 16 32 H 0.07 2.06 4.66 -2.39 -0.01 2.05 16 33 H 0.10 1.71 8.07 -2.39 -0.02 1.69 16 34 H 0.09 2.01 7.35 -2.39 -0.02 2.00 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.39 3.52 9.12 -74.06 -0.68 2.84 16 38 H 0.19 5.22 7.73 -2.92 -0.02 5.20 16 39 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.10 3.40 8.11 -2.39 -0.02 3.38 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 45 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 46 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.12 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -70.80 394.17 3.26 -67.54 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.30 Total: 26.35 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 6.00 Total: -13.81 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -3.14 Total: -89.66 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.92 Total: -34.12 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -70.80 3.26 -67.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443952624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.502 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds