Wall clock time and date at job start Tue Mar 31 2020 16:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 114.00188 * 2 1 4 4 C 1.52997 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47381 * 184.99958 * 4 3 2 6 6 C 1.53006 * 109.47101 * 305.00077 * 4 3 2 7 7 N 1.46501 * 109.47067 * 64.99911 * 4 3 2 8 8 C 1.34784 * 119.99401 * 155.00043 * 7 4 3 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 4 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 4 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47083 * 59.99908 * 1 2 3 30 30 H 1.08995 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47030 * 300.00290 * 1 2 3 32 32 H 1.08998 * 109.46505 * 60.00005 * 3 2 1 33 33 H 1.08992 * 109.47167 * 299.99987 * 3 2 1 34 34 H 1.09007 * 109.47091 * 180.02562 * 6 4 3 35 35 H 1.08996 * 109.47148 * 299.99625 * 6 4 3 36 36 H 1.09002 * 109.46989 * 60.00447 * 6 4 3 37 37 H 0.96994 * 120.00159 * 335.00218 * 7 4 3 38 38 H 1.08001 * 125.11715 * 0.03110 * 11 10 8 39 39 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 40 40 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 41 41 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 42 42 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 45 45 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 46 46 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.16478 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 6 3.9780 0.3197 1.1826 7 7 3.9767 0.5639 -1.2509 8 6 5.2210 0.7939 -1.7150 9 8 5.9775 1.5174 -1.0950 10 6 5.6632 0.1719 -2.9704 11 6 4.9345 -0.6563 -3.7721 12 7 5.6776 -1.0294 -4.8416 13 6 5.2159 -1.9174 -5.9113 14 6 5.6515 -3.3521 -5.6069 15 6 5.1770 -4.2655 -6.7077 16 1 4.6207 -3.8628 -7.5413 17 6 5.4584 -5.6142 -6.6538 18 7 6.1361 -6.1044 -5.6389 19 14 4.8768 -6.7450 -8.0221 20 1 5.9194 -6.8228 -9.0767 21 1 4.6280 -8.1014 -7.4711 22 1 3.6208 -6.2100 -8.6064 23 6 6.9328 -0.4603 -4.7778 24 6 8.0463 -0.5147 -5.6102 25 6 9.1862 0.1848 -5.2798 26 6 9.2354 0.9515 -4.1244 27 6 8.1414 1.0224 -3.2903 28 6 6.9828 0.3195 -3.6115 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 5.0647 0.2340 1.1834 35 1 3.6498 0.7816 2.1138 36 1 3.5350 -0.6722 1.0930 37 1 3.3733 -0.0125 -1.7454 38 1 3.9176 -0.9673 -3.5833 39 1 5.6492 -1.5996 -6.8597 40 1 4.1287 -1.8737 -5.9760 41 1 5.2181 -3.6699 -4.6586 42 1 6.7386 -3.3958 -5.5424 43 1 6.3337 -7.0533 -5.6008 44 1 8.0186 -1.1085 -6.5119 45 1 10.0500 0.1358 -5.9263 46 1 10.1357 1.4944 -3.8774 47 1 8.1820 1.6202 -2.3917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444267671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:09 Heat of formation + Delta-G solvation = -55.780343 kcal Electronic energy + Delta-G solvation = -27738.555067 eV Core-core repulsion = 23885.564478 eV Total energy + Delta-G solvation = -3852.990589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48521 -40.50576 -38.84814 -38.13533 -36.06755 -35.83706 -34.09002 -32.30741 -31.78324 -30.26383 -29.58332 -28.23971 -26.96019 -26.51921 -24.34897 -23.95240 -23.15773 -21.85294 -21.67648 -20.76186 -18.87126 -18.40145 -17.90945 -17.32853 -16.96410 -16.72317 -16.67313 -16.41540 -16.19755 -15.98424 -15.61488 -15.34360 -15.17344 -14.92777 -14.44045 -14.40014 -14.30333 -14.15482 -13.64635 -13.46312 -13.44513 -13.08636 -12.90291 -12.81500 -12.74205 -12.55939 -12.35692 -12.07816 -12.04923 -11.97248 -11.89951 -11.65537 -11.40473 -10.92110 -10.63611 -10.58205 -10.55833 -10.07563 -9.20267 -8.62647 -8.24786 -6.38836 0.05219 0.62635 1.06770 1.41997 1.42304 1.53427 1.82483 2.26052 2.39626 2.45938 2.87202 3.02066 3.09925 3.69943 3.71805 3.78538 3.89497 4.10724 4.14323 4.25260 4.30345 4.38412 4.44307 4.47717 4.50725 4.55584 4.62190 4.64404 4.68974 4.69840 4.75845 4.82102 4.83698 4.94887 5.02102 5.14488 5.34967 5.36059 5.37785 5.53321 5.56617 5.65393 5.70187 5.72214 5.85209 6.03247 6.23486 6.24498 6.28773 6.64619 6.77898 7.32413 7.34203 8.86600 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008483 B = 0.003496 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.894874 B = 8006.368293 C =10712.317703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.059 3.941 4 C 0.145 3.855 5 H 0.094 0.906 6 C -0.154 4.154 7 N -0.713 5.713 8 C 0.598 3.402 9 O -0.585 6.585 10 C -0.272 4.272 11 C 0.130 3.870 12 N -0.460 5.460 13 C 0.118 3.882 14 C 0.021 3.979 15 C -0.541 4.541 16 H 0.075 0.925 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.256 1.256 23 C 0.067 3.933 24 C -0.133 4.133 25 C -0.105 4.105 26 C -0.138 4.138 27 C -0.090 4.090 28 C -0.087 4.087 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.205 0.795 39 H 0.088 0.912 40 H 0.109 0.891 41 H -0.005 1.005 42 H -0.012 1.012 43 H 0.264 0.736 44 H 0.122 0.878 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 15.908 7.619 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.018 4.018 4 C 0.041 3.959 5 H 0.112 0.888 6 C -0.212 4.212 7 N -0.365 5.365 8 C 0.388 3.612 9 O -0.467 6.467 10 C -0.282 4.282 11 C -0.005 4.005 12 N -0.138 5.138 13 C -0.002 4.002 14 C -0.017 4.017 15 C -0.580 4.580 16 H 0.093 0.907 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.180 1.180 23 C -0.038 4.038 24 C -0.153 4.153 25 C -0.124 4.124 26 C -0.156 4.156 27 C -0.109 4.109 28 C -0.092 4.092 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.246 0.754 38 H 0.222 0.778 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.014 0.986 42 H 0.006 0.994 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.172 0.828 46 H 0.170 0.830 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.005 15.896 7.865 19.458 hybrid contribution -0.417 -1.208 -0.624 1.422 sum -8.422 14.687 7.241 18.414 Atomic orbital electron populations 1.22893 0.79486 1.03576 1.00971 1.87883 1.21303 1.27954 1.95622 1.22834 0.90970 0.85352 1.02666 1.21115 0.93373 0.97802 0.83644 0.88812 1.22024 1.00307 1.00883 0.98024 1.45773 1.13950 1.51331 1.25440 1.17215 0.81578 0.79280 0.83100 1.90688 1.54892 1.40535 1.60581 1.19967 0.95953 1.11984 1.00335 1.22577 0.98077 0.93911 0.85928 1.44312 1.10241 1.38433 1.20787 1.22142 1.01350 0.88752 0.87912 1.19247 0.95226 0.90823 0.96355 1.21470 1.35890 0.93012 1.07602 0.90717 1.25968 0.94928 1.00271 0.98296 1.70124 1.40613 1.14096 1.32311 0.85407 0.79220 0.77561 0.78632 1.20012 1.21236 1.17989 1.18590 0.87840 0.99093 0.98233 1.20385 0.92017 1.02856 1.00026 1.21143 0.97173 0.96341 0.97717 1.21257 0.98739 1.00814 0.94823 1.20714 0.91679 0.98626 0.99851 1.19070 0.94658 1.00519 0.94931 0.93153 0.89209 0.92839 0.89666 0.91538 0.94603 0.89918 0.92115 0.75415 0.77822 0.89394 0.87257 0.98627 0.99352 0.92738 0.86004 0.82804 0.83023 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -6.90 9.55 -148.98 -1.42 -8.32 16 3 C 0.06 0.84 5.68 71.98 0.41 1.24 16 4 C 0.14 2.95 2.98 44.99 0.13 3.09 16 5 H 0.09 2.04 7.58 -2.39 -0.02 2.02 16 6 C -0.15 -3.30 9.29 71.98 0.67 -2.63 16 7 N -0.71 -17.35 5.05 -446.27 -2.25 -19.61 16 8 C 0.60 19.44 7.76 86.51 0.67 20.11 16 9 O -0.59 -22.40 15.82 -4.24 -0.07 -22.46 16 10 C -0.27 -9.32 6.27 -19.01 -0.12 -9.44 16 11 C 0.13 4.03 10.75 83.70 0.90 4.93 16 12 N -0.46 -16.39 2.74 -515.29 -1.41 -17.81 16 13 C 0.12 4.33 5.89 86.38 0.51 4.84 16 14 C 0.02 1.04 5.30 29.85 0.16 1.20 16 15 C -0.54 -28.17 9.11 25.60 0.23 -27.94 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 19 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 C 0.07 2.50 6.79 38.92 0.26 2.77 16 24 C -0.13 -4.55 9.97 22.37 0.22 -4.33 16 25 C -0.10 -3.01 10.01 22.28 0.22 -2.78 16 26 C -0.14 -3.92 10.03 22.28 0.22 -3.70 16 27 C -0.09 -3.08 9.85 22.40 0.22 -2.85 16 28 C -0.09 -3.27 6.27 -20.08 -0.13 -3.40 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.38 7.56 -2.39 -0.02 1.36 16 37 H 0.41 8.52 7.26 -92.71 -0.67 7.84 16 38 H 0.21 4.58 7.38 -2.91 -0.02 4.56 16 39 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 40 H 0.11 3.41 8.11 -2.39 -0.02 3.39 16 41 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 44 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 45 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 46 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.12 4.20 7.45 -2.91 -0.02 4.18 16 Total: -1.00 -72.44 396.70 3.75 -68.69 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.29 Total: 27.21 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 6.30 Total: -16.66 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -3.38 Total: -92.25 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.49 Total: -30.79 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.44 3.75 -68.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444267671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.907 kcal (2) G-P(sol) polarization free energy of solvation -72.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds