Wall clock time and date at job start Tue Mar 31 2020 16:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99591 * 2 1 4 4 H 1.08991 * 109.47585 * 29.99270 * 3 2 1 5 5 C 1.53000 * 109.46827 * 269.99388 * 3 2 1 6 6 C 1.53003 * 109.46928 * 149.99842 * 3 2 1 7 7 N 1.46500 * 109.46827 * 299.99120 * 6 3 2 8 8 C 1.34778 * 119.99777 * 180.02562 * 7 6 3 9 9 O 1.21675 * 119.99794 * 0.02562 * 8 7 6 10 10 C 1.46909 * 119.99962 * 180.02562 * 8 7 6 11 11 C 1.36369 * 126.76768 * 359.97438 * 10 8 7 12 12 N 1.35475 * 109.76938 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78833 * 179.73258 * 12 11 10 14 14 C 1.53002 * 109.47236 * 265.03104 * 13 12 11 15 15 C 1.50702 * 109.46855 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00335 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99667 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99691 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99911 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47349 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47332 * 119.99680 * 19 17 15 22 22 H 1.48500 * 109.47560 * 240.00061 * 19 17 15 23 23 C 1.37967 * 110.42694 * 0.02562 * 12 11 10 24 24 C 1.39116 * 133.19104 * 180.02562 * 23 12 11 25 25 C 1.37759 * 119.93176 * 179.97438 * 24 23 12 26 26 C 1.38763 * 120.63430 * 0.02562 * 25 24 23 27 27 C 1.37755 * 120.29723 * 359.97438 * 26 25 24 28 28 C 1.39275 * 119.67553 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46963 * 60.01058 * 1 2 3 30 30 H 1.09005 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47314 * 300.00486 * 1 2 3 32 32 H 1.09000 * 109.47287 * 60.00098 * 5 3 2 33 33 H 1.08997 * 109.47799 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47351 * 300.00251 * 5 3 2 35 35 H 1.09000 * 109.46481 * 179.97438 * 6 3 2 36 36 H 1.08993 * 109.47084 * 59.99731 * 6 3 2 37 37 H 0.96993 * 120.00152 * 0.02562 * 7 6 3 38 38 H 1.08001 * 125.11661 * 359.96402 * 11 10 8 39 39 H 1.09006 * 109.46889 * 25.02950 * 13 12 11 40 40 H 1.08995 * 109.47099 * 145.02754 * 13 12 11 41 41 H 1.09002 * 109.46608 * 299.99555 * 14 13 12 42 42 H 1.08995 * 109.47362 * 59.99811 * 14 13 12 43 43 H 0.97002 * 119.99701 * 179.97438 * 18 17 15 44 44 H 1.07997 * 120.03246 * 359.95906 * 24 23 12 45 45 H 1.08001 * 119.68533 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.84848 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.15900 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2634 0.7213 7 7 3.1601 0.8174 2.1026 8 6 4.2159 0.7043 2.9327 9 8 5.3340 0.9730 2.5349 10 6 4.0167 0.2566 4.3176 11 6 2.8324 -0.0780 4.9050 12 7 3.0460 -0.4423 6.1922 13 6 1.9986 -0.8591 7.1278 14 6 1.5473 0.3445 7.9576 15 6 0.4703 -0.0845 8.9204 16 1 0.1403 -1.1127 8.9384 17 6 -0.0939 0.8357 9.7783 18 7 0.3084 2.0877 9.7567 19 14 -1.4293 0.3042 10.9713 20 1 -1.6993 -1.1458 10.7982 21 1 -0.9803 0.5607 12.3634 22 1 -2.6697 1.0747 10.7013 23 6 4.3884 -0.3590 6.4997 24 6 5.1181 -0.6158 7.6560 25 6 6.4841 -0.4374 7.6606 26 6 7.1442 -0.0022 6.5203 27 6 6.4392 0.2574 5.3656 28 6 5.0578 0.0814 5.3468 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.2569 1.8013 -1.9564 33 1 2.6614 2.7669 -1.4427 34 1 2.8831 1.0774 -1.9563 35 1 3.8023 2.2591 0.7209 36 1 4.0241 0.5695 0.2075 37 1 2.2688 0.6036 2.4197 38 1 1.8689 -0.0559 4.4173 39 1 1.1497 -1.2548 6.5701 40 1 2.3896 -1.6312 7.7904 41 1 2.3962 0.7401 8.5153 42 1 1.1564 1.1166 7.2949 43 1 -0.0888 2.7351 10.3600 44 1 4.6141 -0.9543 8.5492 45 1 7.0465 -0.6376 8.5606 46 1 8.2154 0.1338 6.5382 47 1 6.9552 0.5965 4.4795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444278416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:00 Heat of formation + Delta-G solvation = -38.193752 kcal Electronic energy + Delta-G solvation = -27579.831985 eV Core-core repulsion = 23727.604009 eV Total energy + Delta-G solvation = -3852.227977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18903 -39.36203 -38.24835 -36.84663 -34.63087 -34.07093 -32.46528 -31.85109 -30.41386 -28.88357 -28.68642 -27.12195 -26.21586 -24.93548 -22.70076 -22.36506 -21.78747 -21.48330 -20.31586 -19.41120 -17.50746 -17.15035 -16.65553 -16.56676 -15.85087 -15.53704 -15.22534 -15.11239 -15.02946 -14.71431 -14.55320 -14.13145 -13.88112 -13.57773 -13.35057 -13.02970 -12.90728 -12.85514 -12.60435 -12.49805 -12.43193 -12.26910 -11.80693 -11.71614 -11.38282 -11.19139 -11.11992 -11.06003 -10.70958 -10.60503 -10.31592 -10.04235 -9.93217 -9.63364 -9.44077 -9.20477 -8.98712 -8.57773 -7.91638 -7.30690 -6.21176 -4.27613 1.31756 1.89963 2.36011 3.12596 3.18317 3.26792 3.28840 3.31564 3.42402 3.72400 4.28625 4.30939 4.47044 4.69796 4.80738 4.88270 5.01857 5.02611 5.08712 5.09552 5.15160 5.28395 5.34973 5.38718 5.40794 5.49592 5.50852 5.57958 5.70755 5.76944 5.83111 5.88867 5.98681 6.03563 6.05648 6.35382 6.39277 6.49760 6.75682 6.84998 6.91600 6.99578 7.05736 7.32490 7.37447 7.53939 7.56035 7.69436 7.77140 8.08883 8.51070 8.78448 9.38475 10.89585 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.003356 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.906984 B = 8341.914096 C =11047.950875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.381 6.381 3 C 0.072 3.928 4 H 0.069 0.931 5 C -0.172 4.172 6 C 0.127 3.873 7 N -0.731 5.731 8 C 0.598 3.402 9 O -0.552 6.552 10 C -0.255 4.255 11 C 0.124 3.876 12 N -0.450 5.450 13 C 0.101 3.899 14 C 0.012 3.988 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.887 5.887 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.092 3.908 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.073 4.073 28 C -0.062 4.062 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.169 0.831 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -3.084 -16.892 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.300 6.300 3 C 0.013 3.987 4 H 0.087 0.913 5 C -0.230 4.230 6 C 0.003 3.997 7 N -0.383 5.383 8 C 0.389 3.611 9 O -0.431 6.431 10 C -0.266 4.266 11 C -0.012 4.012 12 N -0.127 5.127 13 C -0.018 4.018 14 C -0.026 4.026 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.013 4.013 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.165 4.165 27 C -0.091 4.091 28 C -0.066 4.066 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.187 0.813 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.105 -3.000 -16.860 17.610 hybrid contribution -1.682 0.035 0.883 1.900 sum 2.423 -2.965 -15.977 16.429 Atomic orbital electron populations 1.22837 0.80916 1.02998 1.00091 1.87987 1.19719 1.27211 1.95073 1.22422 0.94694 0.85326 0.96214 0.91333 1.22200 1.02742 1.02074 0.95958 1.21401 0.95589 1.00971 0.81693 1.45663 1.10392 1.70513 1.11707 1.17218 0.83895 0.76198 0.83829 1.90726 1.23789 1.51315 1.77253 1.19733 0.92819 1.19721 0.94313 1.22028 0.98457 0.96262 0.84477 1.44363 1.06256 1.52232 1.09889 1.22466 0.87446 1.00845 0.91062 1.19459 0.97047 0.91570 0.94505 1.21020 1.20563 0.95781 1.19568 0.92204 1.25007 0.97007 0.94830 0.97236 1.69980 1.42257 1.02348 1.37912 0.86464 0.81473 0.78806 0.80846 1.19595 1.20811 1.20838 1.18269 0.83209 1.03891 0.95939 1.20135 0.93681 1.03706 0.95766 1.20747 0.93237 1.00703 0.98269 1.20879 0.99442 1.03063 0.93125 1.20555 0.91804 0.98574 0.98195 1.18687 0.93057 1.03100 0.91737 0.94106 0.89471 0.93698 0.92027 0.91135 0.91348 0.90204 0.90775 0.76729 0.81341 0.89908 0.90152 0.95622 0.95889 0.92685 0.85863 0.86008 0.86316 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.65 10.09 -35.23 -0.36 -4.01 16 3 C 0.07 0.60 2.81 -26.73 -0.08 0.52 16 4 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 5 C -0.17 -1.15 9.53 37.16 0.35 -0.80 16 6 C 0.13 1.35 5.37 -4.04 -0.02 1.33 16 7 N -0.73 -9.10 5.44 -61.54 -0.33 -9.43 16 8 C 0.60 9.76 7.80 -12.75 -0.10 9.66 16 9 O -0.55 -10.54 16.16 5.21 0.08 -10.45 16 10 C -0.25 -4.33 6.27 -103.32 -0.65 -4.98 16 11 C 0.12 1.93 10.75 -16.62 -0.18 1.75 16 12 N -0.45 -7.98 2.74 -114.22 -0.31 -8.30 16 13 C 0.10 1.87 5.89 -4.04 -0.02 1.84 16 14 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 15 C -0.53 -13.75 9.11 -34.44 -0.31 -14.06 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 19 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C 0.09 1.69 6.79 -83.97 -0.57 1.12 16 24 C -0.11 -1.92 9.97 -39.43 -0.39 -2.32 16 25 C -0.11 -1.65 10.01 -39.56 -0.40 -2.04 16 26 C -0.15 -2.17 10.03 -39.56 -0.40 -2.57 16 27 C -0.07 -1.23 9.85 -39.37 -0.39 -1.62 16 28 C -0.06 -1.13 6.27 -104.95 -0.66 -1.79 16 29 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.20 7.23 -40.82 -0.30 3.91 16 38 H 0.17 1.98 7.38 -52.49 -0.39 1.59 16 39 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.13 2.12 7.45 -52.49 -0.39 1.73 16 LS Contribution 397.73 15.07 5.99 5.99 Total: -1.00 -32.69 397.73 -9.50 -42.19 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.33 Total: 4.29 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.96 Total: -10.95 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.09 Total: -42.42 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.27 Total: -14.46 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.69 -9.50 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444278416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.994 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds