Wall clock time and date at job start Tue Mar 31 2020 16:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99591 * 2 1 4 4 H 1.08991 * 109.47585 * 29.99270 * 3 2 1 5 5 C 1.53000 * 109.46827 * 269.99388 * 3 2 1 6 6 C 1.53003 * 109.46928 * 149.99842 * 3 2 1 7 7 N 1.46500 * 109.46827 * 299.99120 * 6 3 2 8 8 C 1.34778 * 119.99777 * 180.02562 * 7 6 3 9 9 O 1.21675 * 119.99794 * 0.02562 * 8 7 6 10 10 C 1.46909 * 119.99962 * 180.02562 * 8 7 6 11 11 C 1.36369 * 126.76768 * 359.97438 * 10 8 7 12 12 N 1.35475 * 109.76938 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78833 * 179.73258 * 12 11 10 14 14 C 1.53002 * 109.47236 * 265.03104 * 13 12 11 15 15 C 1.50702 * 109.46855 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00335 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99667 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99691 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99911 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47349 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47332 * 119.99680 * 19 17 15 22 22 H 1.48500 * 109.47560 * 240.00061 * 19 17 15 23 23 C 1.37967 * 110.42694 * 0.02562 * 12 11 10 24 24 C 1.39116 * 133.19104 * 180.02562 * 23 12 11 25 25 C 1.37759 * 119.93176 * 179.97438 * 24 23 12 26 26 C 1.38763 * 120.63430 * 0.02562 * 25 24 23 27 27 C 1.37755 * 120.29723 * 359.97438 * 26 25 24 28 28 C 1.39275 * 119.67553 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46963 * 60.01058 * 1 2 3 30 30 H 1.09005 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47314 * 300.00486 * 1 2 3 32 32 H 1.09000 * 109.47287 * 60.00098 * 5 3 2 33 33 H 1.08997 * 109.47799 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47351 * 300.00251 * 5 3 2 35 35 H 1.09000 * 109.46481 * 179.97438 * 6 3 2 36 36 H 1.08993 * 109.47084 * 59.99731 * 6 3 2 37 37 H 0.96993 * 120.00152 * 0.02562 * 7 6 3 38 38 H 1.08001 * 125.11661 * 359.96402 * 11 10 8 39 39 H 1.09006 * 109.46889 * 25.02950 * 13 12 11 40 40 H 1.08995 * 109.47099 * 145.02754 * 13 12 11 41 41 H 1.09002 * 109.46608 * 299.99555 * 14 13 12 42 42 H 1.08995 * 109.47362 * 59.99811 * 14 13 12 43 43 H 0.97002 * 119.99701 * 179.97438 * 18 17 15 44 44 H 1.07997 * 120.03246 * 359.95906 * 24 23 12 45 45 H 1.08001 * 119.68533 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.84848 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.15900 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2634 0.7213 7 7 3.1601 0.8174 2.1026 8 6 4.2159 0.7043 2.9327 9 8 5.3340 0.9730 2.5349 10 6 4.0167 0.2566 4.3176 11 6 2.8324 -0.0780 4.9050 12 7 3.0460 -0.4423 6.1922 13 6 1.9986 -0.8591 7.1278 14 6 1.5473 0.3445 7.9576 15 6 0.4703 -0.0845 8.9204 16 1 0.1403 -1.1127 8.9384 17 6 -0.0939 0.8357 9.7783 18 7 0.3084 2.0877 9.7567 19 14 -1.4293 0.3042 10.9713 20 1 -1.6993 -1.1458 10.7982 21 1 -0.9803 0.5607 12.3634 22 1 -2.6697 1.0747 10.7013 23 6 4.3884 -0.3590 6.4997 24 6 5.1181 -0.6158 7.6560 25 6 6.4841 -0.4374 7.6606 26 6 7.1442 -0.0022 6.5203 27 6 6.4392 0.2574 5.3656 28 6 5.0578 0.0814 5.3468 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.2569 1.8013 -1.9564 33 1 2.6614 2.7669 -1.4427 34 1 2.8831 1.0774 -1.9563 35 1 3.8023 2.2591 0.7209 36 1 4.0241 0.5695 0.2075 37 1 2.2688 0.6036 2.4197 38 1 1.8689 -0.0559 4.4173 39 1 1.1497 -1.2548 6.5701 40 1 2.3896 -1.6312 7.7904 41 1 2.3962 0.7401 8.5153 42 1 1.1564 1.1166 7.2949 43 1 -0.0888 2.7351 10.3600 44 1 4.6141 -0.9543 8.5492 45 1 7.0465 -0.6376 8.5606 46 1 8.2154 0.1338 6.5382 47 1 6.9552 0.5965 4.4795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444278416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:59 Heat of formation + Delta-G solvation = -57.422315 kcal Electronic energy + Delta-G solvation = -27580.665799 eV Core-core repulsion = 23727.604009 eV Total energy + Delta-G solvation = -3853.061790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48733 -40.42086 -39.11341 -38.13820 -35.84242 -35.65647 -34.06852 -32.71882 -31.87505 -30.26802 -29.99089 -27.81759 -27.26464 -26.40393 -23.95734 -23.88971 -22.98342 -22.41913 -21.71092 -20.63362 -18.87950 -18.40671 -17.82578 -17.74824 -16.92920 -16.71954 -16.67406 -16.34583 -16.12082 -15.96123 -15.56667 -15.46245 -15.13991 -14.92346 -14.44093 -14.36199 -14.30036 -13.95050 -13.64134 -13.57531 -13.43229 -13.29510 -13.02792 -12.91975 -12.81454 -12.56234 -12.34610 -12.29244 -12.05499 -11.91376 -11.70801 -11.65917 -11.38102 -11.01320 -10.64419 -10.58746 -10.56629 -10.08836 -9.20624 -8.62962 -8.25056 -6.38707 0.04758 0.62169 1.05933 1.40797 1.42374 1.54421 1.82038 2.25066 2.39517 2.44477 2.78867 3.01566 3.09755 3.68612 3.71500 3.77738 3.84872 4.04598 4.13548 4.21589 4.25133 4.30464 4.44615 4.47443 4.52682 4.58164 4.60406 4.64008 4.69217 4.71204 4.79913 4.81934 4.84963 4.94523 4.97960 5.13317 5.26952 5.36164 5.38273 5.46884 5.53134 5.64950 5.70381 5.71508 5.84713 6.03403 6.23925 6.25057 6.28407 6.59968 6.78160 7.30894 7.32461 8.86439 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.003356 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.906984 B = 8341.914096 C =11047.950875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.077 3.923 4 H 0.082 0.918 5 C -0.169 4.169 6 C 0.124 3.876 7 N -0.715 5.715 8 C 0.596 3.404 9 O -0.588 6.588 10 C -0.272 4.272 11 C 0.131 3.869 12 N -0.460 5.460 13 C 0.118 3.882 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.074 0.926 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.256 1.256 21 H -0.283 1.283 22 H -0.280 1.280 23 C 0.067 3.933 24 C -0.132 4.132 25 C -0.105 4.105 26 C -0.137 4.137 27 C -0.091 4.091 28 C -0.088 4.088 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.409 0.591 38 H 0.207 0.793 39 H 0.110 0.890 40 H 0.087 0.913 41 H -0.012 1.012 42 H -0.003 1.003 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -4.093 -17.128 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.019 3.981 4 H 0.100 0.900 5 C -0.226 4.226 6 C 0.001 3.999 7 N -0.366 5.366 8 C 0.386 3.614 9 O -0.470 6.470 10 C -0.283 4.283 11 C -0.004 4.004 12 N -0.138 5.138 13 C -0.002 4.002 14 C -0.016 4.016 15 C -0.578 4.578 16 H 0.092 0.908 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.791 3.209 20 H -0.179 1.179 21 H -0.209 1.209 22 H -0.206 1.206 23 C -0.037 4.037 24 C -0.152 4.152 25 C -0.124 4.124 26 C -0.156 4.156 27 C -0.110 4.110 28 C -0.092 4.092 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.245 0.755 38 H 0.223 0.777 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.007 0.993 42 H 0.015 0.985 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.172 0.828 46 H 0.170 0.830 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.973 -4.027 -17.127 17.843 hybrid contribution -1.268 0.367 0.928 1.613 sum 1.705 -3.661 -16.198 16.694 Atomic orbital electron populations 1.22987 0.79583 1.03730 1.01023 1.87954 1.21243 1.27843 1.95252 1.22404 0.93383 0.85353 0.96970 0.90012 1.22181 1.03318 1.02380 0.94758 1.21547 0.97182 1.00571 0.80605 1.45567 1.09987 1.69077 1.12000 1.17230 0.84130 0.76054 0.83968 1.90697 1.25261 1.53189 1.77834 1.19930 0.93179 1.20440 0.94743 1.22572 0.99585 0.94544 0.83657 1.44318 1.05887 1.53126 1.10422 1.22155 0.88559 0.98290 0.91187 1.19247 0.95206 0.93000 0.94154 1.21493 1.20500 0.96359 1.19469 0.90784 1.25956 0.99483 0.94780 0.99258 1.70124 1.44027 1.03738 1.39196 0.85367 0.78312 0.79126 0.78052 1.17918 1.20941 1.20555 1.18581 0.83724 1.04863 0.96563 1.20384 0.94801 1.04538 0.95498 1.21146 0.92603 0.99161 0.99460 1.21261 1.01013 1.01204 0.92107 1.20717 0.91679 0.99537 0.99041 1.19071 0.94013 1.03744 0.92386 0.92906 0.88940 0.93022 0.90898 0.90097 0.92012 0.89999 0.92058 0.75476 0.77666 0.87221 0.89471 0.99315 0.98461 0.92737 0.85940 0.82770 0.83023 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -7.14 10.09 -148.98 -1.50 -8.64 16 3 C 0.08 1.17 2.81 30.60 0.09 1.25 16 4 H 0.08 1.03 7.79 -2.39 -0.02 1.01 16 5 C -0.17 -2.00 9.53 71.98 0.69 -1.31 16 6 C 0.12 2.59 5.37 86.38 0.46 3.05 16 7 N -0.71 -17.43 5.44 -466.85 -2.54 -19.96 16 8 C 0.60 19.67 7.80 86.51 0.67 20.34 16 9 O -0.59 -23.10 16.16 -4.27 -0.07 -23.17 16 10 C -0.27 -9.34 6.27 -19.02 -0.12 -9.46 16 11 C 0.13 4.02 10.75 83.69 0.90 4.92 16 12 N -0.46 -16.22 2.74 -515.27 -1.41 -17.63 16 13 C 0.12 4.26 5.89 86.38 0.51 4.77 16 14 C 0.02 1.05 5.30 29.85 0.16 1.20 16 15 C -0.54 -27.75 9.11 25.60 0.23 -27.51 16 16 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.00 0.21 5.46 84.66 0.46 0.67 16 18 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 19 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 C 0.07 2.50 6.79 38.91 0.26 2.76 16 24 C -0.13 -4.51 9.97 22.37 0.22 -4.29 16 25 C -0.10 -3.00 10.01 22.28 0.22 -2.78 16 26 C -0.14 -3.92 10.03 22.28 0.22 -3.69 16 27 C -0.09 -3.13 9.85 22.40 0.22 -2.91 16 28 C -0.09 -3.29 6.27 -20.08 -0.13 -3.42 16 29 H 0.05 0.50 7.87 -2.39 -0.02 0.48 16 30 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 32 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.41 8.08 7.23 -92.71 -0.67 7.41 16 38 H 0.21 4.40 7.38 -2.91 -0.02 4.38 16 39 H 0.11 3.36 8.11 -2.38 -0.02 3.34 16 40 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 41 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 46 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 47 H 0.12 4.22 7.45 -2.91 -0.02 4.20 16 Total: -1.00 -72.60 397.73 3.39 -69.21 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.29 Total: 25.75 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 6.31 Total: -14.90 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -3.67 Total: -91.65 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.57 Total: -31.81 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -72.60 3.39 -69.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444278416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.791 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds