Wall clock time and date at job start Tue Mar 31 2020 16:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00327 * 2 1 4 4 H 1.09004 * 109.46505 * 330.00068 * 3 2 1 5 5 C 1.52997 * 109.47100 * 89.99381 * 3 2 1 6 6 C 1.52997 * 109.47396 * 210.00003 * 3 2 1 7 7 N 1.46505 * 109.47212 * 64.99584 * 6 3 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 3 9 9 O 1.21671 * 120.00593 * 0.02562 * 8 7 6 10 10 C 1.46915 * 119.99453 * 180.02562 * 8 7 6 11 11 C 1.36372 * 126.77387 * 0.02650 * 10 8 7 12 12 N 1.35464 * 109.77034 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78573 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47211 * 265.02715 * 13 12 11 15 15 C 1.50696 * 109.47391 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00155 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00029 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00125 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47345 * 89.99739 * 19 17 15 21 21 H 1.48504 * 109.47307 * 209.99597 * 19 17 15 22 22 H 1.48505 * 109.46873 * 329.99364 * 19 17 15 23 23 C 1.37952 * 110.43026 * 0.02562 * 12 11 10 24 24 C 1.39128 * 133.19031 * 180.02562 * 23 12 11 25 25 C 1.37760 * 119.93218 * 179.97438 * 24 23 12 26 26 C 1.38763 * 120.63207 * 0.02562 * 25 24 23 27 27 C 1.37749 * 120.30434 * 359.97438 * 26 25 24 28 28 C 1.39279 * 119.67089 * 359.73156 * 27 26 25 29 29 H 1.08997 * 109.47237 * 299.99973 * 1 2 3 30 30 H 1.09001 * 109.47057 * 60.00409 * 1 2 3 31 31 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47400 * 300.00698 * 5 3 2 33 33 H 1.09004 * 109.46881 * 60.00917 * 5 3 2 34 34 H 1.09002 * 109.47016 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47153 * 304.99576 * 6 3 2 36 36 H 1.09001 * 109.46832 * 184.99767 * 6 3 2 37 37 H 0.96996 * 119.99606 * 0.02562 * 7 6 3 38 38 H 1.07997 * 125.10990 * 359.94452 * 11 10 8 39 39 H 1.09006 * 109.47208 * 25.02213 * 13 12 11 40 40 H 1.08995 * 109.47608 * 145.02332 * 13 12 11 41 41 H 1.08996 * 109.47142 * 300.00036 * 14 13 12 42 42 H 1.09006 * 109.47291 * 59.99839 * 14 13 12 43 43 H 0.96998 * 119.99957 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.02980 * 359.97438 * 24 23 12 45 45 H 1.07996 * 119.68570 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.84763 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 7 3.1477 0.9330 -2.1328 8 6 4.2013 0.8405 -2.9681 9 8 5.3279 1.0308 -2.5499 10 6 3.9894 0.5098 -4.3838 11 6 2.7947 0.2713 -4.9965 12 7 2.9984 0.0002 -6.3080 13 6 1.9389 -0.3048 -7.2728 14 6 1.7778 -1.8217 -7.3909 15 6 0.6876 -2.1353 -8.3829 16 1 0.1624 -1.3330 -8.8798 17 6 0.3612 -3.4466 -8.6569 18 7 -0.5899 -3.7203 -9.5230 19 14 1.2700 -4.8343 -7.7980 20 1 0.5653 -5.1825 -6.5382 21 1 1.3116 -6.0234 -8.6867 22 1 2.6557 -4.4004 -7.4866 23 6 4.3442 0.0506 -6.6068 24 6 5.0673 -0.1446 -7.7793 25 6 6.4395 -0.0235 -7.7688 26 6 7.1126 0.2919 -6.5971 27 6 6.4145 0.4890 -5.4260 28 6 5.0263 0.3757 -5.4235 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2567 1.8014 1.9563 33 1 2.8829 1.0775 1.9563 34 1 2.6606 2.7673 1.4425 35 1 3.9931 0.5052 -0.2617 36 1 3.8427 2.2370 -0.6443 37 1 2.2495 0.7817 -2.4663 38 1 1.8312 0.2945 -4.5092 39 1 1.0009 0.1349 -6.9335 40 1 2.2032 0.1094 -8.2458 41 1 2.7156 -2.2613 -7.7302 42 1 1.5133 -2.2358 -6.4179 43 1 -0.8197 -4.6428 -9.7155 44 1 4.5533 -0.3909 -8.6966 45 1 6.9968 -0.1754 -8.6813 46 1 8.1887 0.3834 -6.6032 47 1 6.9406 0.7340 -4.5152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444278418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:04 Heat of formation + Delta-G solvation = -34.347191 kcal Electronic energy + Delta-G solvation = -27690.009813 eV Core-core repulsion = 23837.948636 eV Total energy + Delta-G solvation = -3852.061177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30570 -39.42478 -38.30436 -36.95912 -34.71184 -34.15015 -32.50166 -31.91366 -30.65554 -29.08399 -28.90151 -27.16905 -26.33266 -25.06183 -22.80025 -22.26750 -21.74817 -21.50363 -20.34730 -19.50846 -17.66200 -17.20454 -16.95676 -16.65826 -15.93478 -15.59397 -15.32152 -15.22404 -15.08521 -14.72784 -14.55332 -14.07149 -13.96566 -13.68724 -13.41671 -13.11570 -13.08185 -12.92350 -12.80531 -12.61494 -12.54722 -12.36617 -11.99640 -11.74294 -11.49632 -11.34659 -11.19563 -11.09657 -10.75097 -10.43522 -10.29968 -10.07439 -10.00571 -9.70740 -9.50794 -9.34314 -9.07024 -8.73948 -8.02846 -7.42329 -6.24860 -4.27036 1.21159 1.79579 2.25373 3.01704 3.19311 3.23656 3.28314 3.33197 3.37937 3.62671 4.20465 4.28686 4.41991 4.64568 4.75348 4.77677 4.91331 4.98509 4.99823 5.07236 5.09140 5.24033 5.26633 5.33606 5.37442 5.40703 5.47095 5.49977 5.64665 5.67692 5.76987 5.79772 5.84098 5.92581 5.95378 6.14473 6.29595 6.41803 6.65299 6.80900 6.83328 6.86297 6.88625 6.90283 7.08107 7.36713 7.41859 7.56239 7.61474 8.25038 8.42297 8.75328 9.35721 10.87403 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.003720 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.170268 B = 7525.076014 C =10138.700009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.072 3.928 4 H 0.068 0.932 5 C -0.172 4.172 6 C 0.127 3.873 7 N -0.731 5.731 8 C 0.598 3.402 9 O -0.550 6.550 10 C -0.253 4.253 11 C 0.122 3.878 12 N -0.454 5.454 13 C 0.111 3.889 14 C -0.024 4.024 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.265 1.265 23 C 0.090 3.910 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.145 4.145 27 C -0.072 4.072 28 C -0.062 4.062 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.398 0.602 38 H 0.171 0.829 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.267 0.733 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 11.788 16.066 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C 0.014 3.986 4 H 0.086 0.914 5 C -0.230 4.230 6 C 0.003 3.997 7 N -0.383 5.383 8 C 0.388 3.612 9 O -0.429 6.429 10 C -0.264 4.264 11 C -0.014 4.014 12 N -0.131 5.131 13 C -0.009 4.009 14 C -0.062 4.062 15 C -0.569 4.569 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.532 5.532 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.015 4.015 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.164 4.164 27 C -0.090 4.090 28 C -0.066 4.066 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.188 0.812 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.076 0.924 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.060 11.538 16.026 20.656 hybrid contribution -0.583 -0.824 0.214 1.032 sum 5.477 10.714 16.240 20.212 Atomic orbital electron populations 1.22835 0.80852 1.03150 0.99955 1.88008 1.19771 1.27075 1.95060 1.22406 0.94618 0.85393 0.96209 0.91442 1.22200 1.02798 1.02018 0.95972 1.21409 0.95630 1.01910 0.80764 1.45692 1.09780 1.73652 1.09201 1.17209 0.84064 0.75665 0.84271 1.90731 1.23101 1.51274 1.77805 1.19768 0.92537 1.20983 0.93103 1.22054 0.98655 0.96831 0.83859 1.44366 1.05989 1.54407 1.08381 1.22237 0.87483 1.00298 0.90864 1.19933 0.98460 0.89828 0.97975 1.20837 1.18200 0.93806 1.24013 0.90600 1.24937 0.94543 0.98753 0.94532 1.69885 1.29885 1.19844 1.33606 0.86821 0.81145 0.81907 0.79783 1.20065 1.21017 1.18912 1.18286 0.83085 1.04342 0.95748 1.20163 0.93786 1.03768 0.95815 1.20769 0.93088 1.00736 0.98224 1.20898 0.99463 1.03430 0.92645 1.20570 0.91761 0.98462 0.98252 1.18700 0.92977 1.03786 0.91167 0.94105 0.93791 0.89365 0.92002 0.91292 0.91180 0.90635 0.90176 0.76794 0.81206 0.89313 0.89536 0.95681 0.96309 0.92355 0.85741 0.85905 0.86234 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.69 10.29 -35.23 -0.36 -4.05 16 3 C 0.07 0.57 2.75 -26.73 -0.07 0.49 16 4 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 5 C -0.17 -1.09 9.53 37.16 0.35 -0.74 16 6 C 0.13 1.28 5.34 -4.04 -0.02 1.26 16 7 N -0.73 -8.56 5.49 -61.54 -0.34 -8.89 16 8 C 0.60 9.27 7.80 -12.75 -0.10 9.17 16 9 O -0.55 -10.11 16.16 5.21 0.08 -10.02 16 10 C -0.25 -4.06 6.27 -103.31 -0.65 -4.71 16 11 C 0.12 1.77 10.75 -16.62 -0.18 1.59 16 12 N -0.45 -7.56 2.74 -114.22 -0.31 -7.87 16 13 C 0.11 1.94 5.89 -4.04 -0.02 1.91 16 14 C -0.02 -0.53 4.37 -27.89 -0.12 -0.65 16 15 C -0.53 -13.91 9.66 -34.44 -0.33 -14.24 16 16 H 0.08 2.10 7.99 -52.48 -0.42 1.68 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 19 Si 0.88 21.04 27.47 -169.99 -4.67 16.38 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 23 C 0.09 1.57 6.79 -83.97 -0.57 1.00 16 24 C -0.12 -1.85 9.97 -39.43 -0.39 -2.25 16 25 C -0.11 -1.53 10.01 -39.56 -0.40 -1.93 16 26 C -0.15 -2.04 10.03 -39.57 -0.40 -2.44 16 27 C -0.07 -1.16 9.85 -39.37 -0.39 -1.55 16 28 C -0.06 -1.08 6.27 -104.95 -0.66 -1.74 16 29 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.85 7.35 -40.82 -0.30 3.55 16 38 H 0.17 1.81 7.38 -52.49 -0.39 1.42 16 39 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 42 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.13 2.03 7.45 -52.49 -0.39 1.64 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -33.20 394.43 -9.13 -42.33 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.30 Total: 3.17 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.95 Total: -11.54 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.12 Total: -42.20 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.28 Total: -14.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.20 -9.13 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444278418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.985 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds