Wall clock time and date at job start Tue Mar 31 2020 16:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00327 * 2 1 4 4 H 1.09004 * 109.46505 * 330.00068 * 3 2 1 5 5 C 1.52997 * 109.47100 * 89.99381 * 3 2 1 6 6 C 1.52997 * 109.47396 * 210.00003 * 3 2 1 7 7 N 1.46505 * 109.47212 * 64.99584 * 6 3 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 3 9 9 O 1.21671 * 120.00593 * 0.02562 * 8 7 6 10 10 C 1.46915 * 119.99453 * 180.02562 * 8 7 6 11 11 C 1.36372 * 126.77387 * 0.02650 * 10 8 7 12 12 N 1.35464 * 109.77034 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78573 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47211 * 265.02715 * 13 12 11 15 15 C 1.50696 * 109.47391 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00155 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00029 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00125 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47345 * 89.99739 * 19 17 15 21 21 H 1.48504 * 109.47307 * 209.99597 * 19 17 15 22 22 H 1.48505 * 109.46873 * 329.99364 * 19 17 15 23 23 C 1.37952 * 110.43026 * 0.02562 * 12 11 10 24 24 C 1.39128 * 133.19031 * 180.02562 * 23 12 11 25 25 C 1.37760 * 119.93218 * 179.97438 * 24 23 12 26 26 C 1.38763 * 120.63207 * 0.02562 * 25 24 23 27 27 C 1.37749 * 120.30434 * 359.97438 * 26 25 24 28 28 C 1.39279 * 119.67089 * 359.73156 * 27 26 25 29 29 H 1.08997 * 109.47237 * 299.99973 * 1 2 3 30 30 H 1.09001 * 109.47057 * 60.00409 * 1 2 3 31 31 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47400 * 300.00698 * 5 3 2 33 33 H 1.09004 * 109.46881 * 60.00917 * 5 3 2 34 34 H 1.09002 * 109.47016 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47153 * 304.99576 * 6 3 2 36 36 H 1.09001 * 109.46832 * 184.99767 * 6 3 2 37 37 H 0.96996 * 119.99606 * 0.02562 * 7 6 3 38 38 H 1.07997 * 125.10990 * 359.94452 * 11 10 8 39 39 H 1.09006 * 109.47208 * 25.02213 * 13 12 11 40 40 H 1.08995 * 109.47608 * 145.02332 * 13 12 11 41 41 H 1.08996 * 109.47142 * 300.00036 * 14 13 12 42 42 H 1.09006 * 109.47291 * 59.99839 * 14 13 12 43 43 H 0.96998 * 119.99957 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.02980 * 359.97438 * 24 23 12 45 45 H 1.07996 * 119.68570 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.84763 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 7 3.1477 0.9330 -2.1328 8 6 4.2013 0.8405 -2.9681 9 8 5.3279 1.0308 -2.5499 10 6 3.9894 0.5098 -4.3838 11 6 2.7947 0.2713 -4.9965 12 7 2.9984 0.0002 -6.3080 13 6 1.9389 -0.3048 -7.2728 14 6 1.7778 -1.8217 -7.3909 15 6 0.6876 -2.1353 -8.3829 16 1 0.1624 -1.3330 -8.8798 17 6 0.3612 -3.4466 -8.6569 18 7 -0.5899 -3.7203 -9.5230 19 14 1.2700 -4.8343 -7.7980 20 1 0.5653 -5.1825 -6.5382 21 1 1.3116 -6.0234 -8.6867 22 1 2.6557 -4.4004 -7.4866 23 6 4.3442 0.0506 -6.6068 24 6 5.0673 -0.1446 -7.7793 25 6 6.4395 -0.0235 -7.7688 26 6 7.1126 0.2919 -6.5971 27 6 6.4145 0.4890 -5.4260 28 6 5.0263 0.3757 -5.4235 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2567 1.8014 1.9563 33 1 2.8829 1.0775 1.9563 34 1 2.6606 2.7673 1.4425 35 1 3.9931 0.5052 -0.2617 36 1 3.8427 2.2370 -0.6443 37 1 2.2495 0.7817 -2.4663 38 1 1.8312 0.2945 -4.5092 39 1 1.0009 0.1349 -6.9335 40 1 2.2032 0.1094 -8.2458 41 1 2.7156 -2.2613 -7.7302 42 1 1.5133 -2.2358 -6.4179 43 1 -0.8197 -4.6428 -9.7155 44 1 4.5533 -0.3909 -8.6966 45 1 6.9968 -0.1754 -8.6813 46 1 8.1887 0.3834 -6.6032 47 1 6.9406 0.7340 -4.5152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444278418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:04 Heat of formation + Delta-G solvation = -54.541288 kcal Electronic energy + Delta-G solvation = -27690.885495 eV Core-core repulsion = 23837.948636 eV Total energy + Delta-G solvation = -3852.936859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51234 -40.42466 -39.11961 -38.16166 -35.84554 -35.67529 -34.15940 -32.74902 -32.05535 -30.46068 -30.02663 -27.86649 -27.32635 -26.38833 -23.94639 -23.62761 -22.93307 -22.43567 -21.70554 -20.64404 -19.21461 -18.50719 -17.82796 -17.75301 -16.93958 -16.76578 -16.58107 -16.35323 -16.09917 -15.96080 -15.60120 -15.46902 -15.19490 -14.96507 -14.67057 -14.52545 -14.36628 -13.93226 -13.71046 -13.56597 -13.56059 -13.29243 -13.03401 -13.00530 -12.87894 -12.55938 -12.29948 -12.11219 -12.03342 -11.84765 -11.82952 -11.69746 -11.52274 -11.02470 -10.83976 -10.60225 -10.58174 -10.09587 -9.22282 -8.64494 -8.36176 -6.41127 0.03689 0.60824 1.04745 1.29697 1.34448 1.43342 1.77874 2.24726 2.28652 2.43599 2.79286 2.99736 3.00460 3.67270 3.69559 3.76886 3.83771 4.04848 4.11960 4.21086 4.23412 4.29819 4.32512 4.46419 4.50783 4.58534 4.59603 4.61009 4.64183 4.70235 4.79098 4.80657 4.84454 4.94153 4.98366 5.11092 5.15606 5.19322 5.27003 5.46281 5.49474 5.52161 5.64170 5.70567 5.82099 6.12801 6.22240 6.24783 6.26342 6.59814 6.66785 7.24657 7.30814 8.79270 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.003720 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.170268 B = 7525.076014 C =10138.700009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.077 3.923 4 H 0.087 0.913 5 C -0.169 4.169 6 C 0.124 3.876 7 N -0.715 5.715 8 C 0.595 3.405 9 O -0.588 6.588 10 C -0.270 4.270 11 C 0.132 3.868 12 N -0.461 5.461 13 C 0.124 3.876 14 C -0.018 4.018 15 C -0.527 4.527 16 H 0.051 0.949 17 C 0.020 3.980 18 N -0.940 5.940 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.261 1.261 23 C 0.067 3.933 24 C -0.133 4.133 25 C -0.104 4.104 26 C -0.137 4.137 27 C -0.091 4.091 28 C -0.087 4.087 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.410 0.590 38 H 0.210 0.790 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.013 0.987 42 H 0.022 0.978 43 H 0.268 0.732 44 H 0.125 0.875 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 12.312 17.217 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.019 3.981 4 H 0.104 0.896 5 C -0.227 4.227 6 C 0.001 3.999 7 N -0.367 5.367 8 C 0.386 3.614 9 O -0.470 6.470 10 C -0.281 4.281 11 C -0.002 4.002 12 N -0.139 5.139 13 C 0.004 3.996 14 C -0.056 4.056 15 C -0.566 4.566 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.580 5.580 19 Si 0.761 3.239 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.037 4.037 24 C -0.153 4.153 25 C -0.123 4.123 26 C -0.156 4.156 27 C -0.109 4.109 28 C -0.091 4.091 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.226 0.774 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.172 0.828 46 H 0.168 0.832 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.241 12.076 17.205 21.927 hybrid contribution -0.621 -0.924 -0.161 1.124 sum 5.620 11.153 17.044 21.130 Atomic orbital electron populations 1.22973 0.79601 1.03553 1.01159 1.87972 1.21255 1.28116 1.95268 1.22421 0.93448 0.85280 0.96972 0.89550 1.22185 1.03279 1.02389 0.94840 1.21536 0.97093 1.01505 0.79765 1.45592 1.09488 1.72106 1.09492 1.17247 0.84236 0.75489 0.84470 1.90705 1.24635 1.53253 1.78370 1.19934 0.92943 1.21845 0.93398 1.22607 0.99794 0.94913 0.82917 1.44279 1.05513 1.55230 1.08907 1.21948 0.88806 0.97200 0.91650 1.19784 0.96082 0.93156 0.96541 1.21151 1.18436 0.93046 1.23960 0.93053 1.25736 0.95375 1.01400 0.95337 1.70008 1.31883 1.20453 1.35643 0.85873 0.80064 0.79018 0.78977 1.19056 1.20884 1.18502 1.18560 0.83546 1.05303 0.96262 1.20408 0.94821 1.04484 0.95598 1.21150 0.92535 0.99197 0.99428 1.21259 1.00980 1.01580 0.91761 1.20713 0.91695 0.99530 0.98974 1.19064 0.93835 1.04391 0.91830 0.92768 0.92707 0.89468 0.90954 0.92257 0.89887 0.92514 0.89576 0.75435 0.77382 0.87175 0.89496 0.96884 0.96005 0.92262 0.85703 0.82834 0.83180 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.50 16 2 O -0.41 -7.20 10.29 -148.98 -1.53 -8.74 16 3 C 0.08 1.06 2.75 30.59 0.08 1.14 16 4 H 0.09 0.88 7.79 -2.39 -0.02 0.86 16 5 C -0.17 -1.83 9.53 71.98 0.69 -1.14 16 6 C 0.12 2.39 5.34 86.38 0.46 2.85 16 7 N -0.72 -15.82 5.49 -466.85 -2.56 -18.39 16 8 C 0.60 18.21 7.80 86.52 0.67 18.89 16 9 O -0.59 -21.89 16.16 -4.26 -0.07 -21.96 16 10 C -0.27 -8.48 6.27 -19.01 -0.12 -8.60 16 11 C 0.13 3.60 10.75 83.70 0.90 4.50 16 12 N -0.46 -14.70 2.74 -515.29 -1.41 -16.11 16 13 C 0.12 4.15 5.89 86.38 0.51 4.66 16 14 C -0.02 -0.75 4.37 29.85 0.13 -0.62 16 15 C -0.53 -27.59 9.66 25.60 0.25 -27.35 16 16 H 0.05 2.88 7.99 -2.91 -0.02 2.85 16 17 C 0.02 1.11 5.47 84.65 0.46 1.58 16 18 N -0.94 -55.68 13.96 21.45 0.30 -55.38 16 19 Si 0.94 43.03 27.47 68.60 1.88 44.92 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.26 -11.72 6.54 99.48 0.65 -11.06 16 23 C 0.07 2.30 6.79 38.92 0.26 2.56 16 24 C -0.13 -4.15 9.97 22.37 0.22 -3.93 16 25 C -0.10 -2.73 10.01 22.28 0.22 -2.51 16 26 C -0.14 -3.62 10.03 22.28 0.22 -3.39 16 27 C -0.09 -2.89 9.85 22.40 0.22 -2.67 16 28 C -0.09 -3.00 6.27 -20.08 -0.13 -3.13 16 29 H 0.05 0.50 7.87 -2.39 -0.02 0.48 16 30 H 0.05 0.53 8.09 -2.39 -0.02 0.51 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 0.64 7.87 -2.39 -0.02 0.63 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 7.01 7.35 -92.71 -0.68 6.33 16 38 H 0.21 3.73 7.38 -2.91 -0.02 3.71 16 39 H 0.11 3.21 8.11 -2.38 -0.02 3.19 16 40 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.01 0.58 7.20 -2.39 -0.02 0.57 16 42 H 0.02 0.92 7.57 -2.38 -0.02 0.90 16 43 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 45 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 46 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 47 H 0.12 3.94 7.45 -2.91 -0.02 3.92 16 Total: -1.00 -72.79 394.43 3.12 -69.66 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.23 Total: 21.65 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 6.29 Total: -15.65 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.68 Total: -89.88 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.60 Total: -30.69 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.92 kcal Total: -72.79 3.12 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444278418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.121 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds