Wall clock time and date at job start Tue Mar 31 2020 16:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46662 * 2 1 4 4 C 1.46767 * 124.34995 * 89.99925 * 3 2 1 5 5 C 1.54477 * 105.47112 * 196.99084 * 4 3 2 6 6 H 1.09002 * 110.97036 * 92.74335 * 5 4 3 7 7 N 1.46498 * 110.96780 * 216.46378 * 5 4 3 8 8 C 1.34776 * 120.00303 * 205.00284 * 7 5 4 9 9 O 1.21282 * 119.99551 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00203 * 180.02562 * 8 7 5 11 11 C 1.53009 * 109.46899 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46712 * 305.97851 * 11 10 8 13 13 C 1.50697 * 109.47213 * 65.98301 * 11 10 8 14 14 H 1.07998 * 119.99976 * 27.68287 * 13 11 10 15 15 C 1.37879 * 119.99790 * 207.67503 * 13 11 10 16 16 N 1.31511 * 120.00276 * 353.65574 * 15 13 11 17 17 Si 1.86799 * 119.99796 * 173.65117 * 15 13 11 18 18 H 1.48500 * 109.46923 * 90.00442 * 17 15 13 19 19 H 1.48503 * 109.47342 * 330.00258 * 17 15 13 20 20 H 1.48496 * 109.46992 * 210.00236 * 17 15 13 21 21 C 1.50704 * 109.46918 * 185.98574 * 11 10 8 22 22 C 1.38238 * 119.99653 * 295.91044 * 21 11 10 23 23 C 1.38240 * 119.99571 * 179.77015 * 22 21 11 24 24 C 1.38233 * 120.00178 * 0.50165 * 23 22 21 25 25 C 1.38235 * 119.99677 * 359.74830 * 24 23 22 26 26 C 1.38232 * 120.00417 * 0.02562 * 25 24 23 27 27 C 1.54620 * 101.76828 * 334.58527 * 5 4 3 28 28 C 1.34421 * 124.34820 * 269.97383 * 3 2 1 29 29 O 1.21274 * 124.94191 * 359.61195 * 28 3 2 30 30 H 1.09002 * 109.47451 * 300.00186 * 1 2 3 31 31 H 1.09004 * 109.46963 * 60.00525 * 1 2 3 32 32 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47340 * 240.00549 * 2 1 3 34 34 H 1.08998 * 109.47282 * 119.99792 * 2 1 3 35 35 H 1.09007 * 110.23963 * 77.99255 * 4 3 2 36 36 H 1.08994 * 110.24547 * 315.99505 * 4 3 2 37 37 H 0.97002 * 120.00140 * 25.00165 * 7 5 4 38 38 H 1.08997 * 109.47180 * 60.00292 * 10 8 7 39 39 H 1.08998 * 109.47221 * 299.99630 * 10 8 7 40 40 H 0.97006 * 119.99782 * 2.90335 * 16 15 13 41 41 H 1.07998 * 120.00335 * 359.97438 * 22 21 11 42 42 H 1.08001 * 119.99597 * 180.22561 * 23 22 21 43 43 H 1.07998 * 119.99817 * 179.72633 * 24 23 22 44 44 H 1.08006 * 119.99603 * 179.97438 * 25 24 23 45 45 H 1.07993 * 120.00301 * 179.97438 * 26 25 24 46 46 H 1.08996 * 110.48709 * 143.47556 * 27 5 4 47 47 H 1.09002 * 110.48619 * 266.12066 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2942 2.1621 1.2117 5 6 2.3533 3.6346 0.7485 6 1 1.3787 4.1133 0.8450 7 7 3.3747 4.3771 1.4911 8 6 3.2698 5.7138 1.6284 9 8 2.3294 6.3017 1.1377 10 6 4.3208 6.4777 2.3918 11 6 3.9655 7.9659 2.3985 12 1 3.8176 8.3087 1.3745 13 6 2.6985 8.1763 3.1868 14 1 2.4365 7.4924 3.9805 15 6 1.8739 9.2420 2.8948 16 7 2.2517 10.1443 2.0157 17 14 0.2199 9.4042 3.7477 18 1 0.3820 10.1920 4.9961 19 1 -0.3010 8.0535 4.0787 20 1 -0.7360 10.0962 2.8463 21 6 5.0873 8.7473 3.0326 22 6 5.4035 8.5465 4.3633 23 6 6.4357 9.2598 4.9437 24 6 7.1448 10.1814 4.1962 25 6 6.8252 10.3859 2.8670 26 6 5.7962 9.6692 2.2853 27 6 2.7510 3.4819 -0.7378 28 6 2.2715 2.0962 -1.1098 29 8 2.1354 1.6894 -2.2442 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2498 1.8637 1.6431 36 1 1.4929 2.0269 1.9381 37 1 4.1267 3.9068 1.8839 38 1 5.2905 6.3374 1.9142 39 1 4.3642 6.1103 3.4170 40 1 3.0914 10.0379 1.5418 41 1 4.8463 7.8300 4.9486 42 1 6.6850 9.1003 5.9823 43 1 7.9483 10.7418 4.6509 44 1 7.3790 11.1062 2.2831 45 1 5.5462 9.8293 1.2469 46 1 2.2501 4.2350 -1.3460 47 1 3.8325 3.5550 -0.8527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452947192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:46 Heat of formation + Delta-G solvation = -51.302908 kcal Electronic energy + Delta-G solvation = -27966.912158 eV Core-core repulsion = 24114.115725 eV Total energy + Delta-G solvation = -3852.796433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75202 -39.16664 -38.32717 -36.66620 -34.96401 -34.19381 -32.46359 -31.32758 -30.13750 -29.54330 -28.70469 -27.53956 -25.11264 -23.64168 -23.01220 -21.87689 -21.59437 -20.46411 -19.78790 -19.35728 -17.25012 -16.89366 -16.75497 -16.31236 -15.99519 -15.66650 -14.91056 -14.64375 -14.31734 -14.20617 -14.01781 -13.91824 -13.68552 -13.58955 -13.47714 -13.11794 -12.83334 -12.54986 -12.50483 -12.32768 -12.24156 -11.88297 -11.88045 -11.53014 -11.47945 -11.25749 -10.98031 -10.73960 -10.46154 -10.17937 -10.07663 -10.06543 -9.71765 -9.17958 -8.99969 -8.84492 -8.66649 -8.30794 -8.16483 -7.66346 -6.26765 -3.94896 2.16484 2.21863 2.43097 2.68698 3.30060 3.38562 3.47256 3.53435 3.66793 4.19957 4.34929 4.57712 4.63963 4.71058 4.76187 4.83747 4.93705 5.06946 5.17483 5.32961 5.34953 5.41030 5.55000 5.56194 5.57504 5.60393 5.73429 5.79049 5.88229 5.89409 5.94489 6.01115 6.12972 6.28539 6.28790 6.38442 6.62391 6.65139 6.75819 6.86682 6.89788 7.16437 7.19957 7.34809 7.68656 7.82136 7.84219 7.99109 8.18190 8.47515 8.84879 8.94320 9.74486 11.13761 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.003006 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.733590 B = 9314.013189 C =10417.067194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.098 3.902 5 C 0.140 3.860 6 H 0.113 0.887 7 N -0.740 5.740 8 C 0.516 3.484 9 O -0.493 6.493 10 C -0.116 4.116 11 C 0.073 3.927 12 H 0.050 0.950 13 C -0.570 4.570 14 H 0.046 0.954 15 C 0.032 3.968 16 N -0.905 5.905 17 Si 1.066 2.934 18 H -0.291 1.291 19 H -0.290 1.290 20 H -0.285 1.285 21 C -0.032 4.032 22 C -0.108 4.108 23 C -0.130 4.130 24 C -0.152 4.152 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.169 4.169 28 C 0.522 3.478 29 O -0.533 6.533 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.396 0.604 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 -16.506 1.845 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.026 4.026 5 C 0.033 3.967 6 H 0.130 0.870 7 N -0.395 5.395 8 C 0.303 3.697 9 O -0.363 6.363 10 C -0.157 4.157 11 C 0.053 3.947 12 H 0.068 0.932 13 C -0.607 4.607 14 H 0.064 0.936 15 C -0.174 4.174 16 N -0.540 5.540 17 Si 0.895 3.105 18 H -0.218 1.218 19 H -0.217 1.217 20 H -0.211 1.211 21 C -0.033 4.033 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.211 4.211 28 C 0.310 3.690 29 O -0.409 6.409 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.914 -15.341 1.004 15.647 hybrid contribution 1.670 -1.137 0.300 2.042 sum 4.583 -16.478 1.304 17.153 Atomic orbital electron populations 1.22174 0.95673 1.02340 1.02769 1.21342 0.94500 0.81048 1.03074 1.48344 1.66237 1.13911 1.07099 1.22326 1.02257 0.90397 0.87604 1.21584 0.94958 0.90557 0.89612 0.86956 1.46134 1.27010 1.08251 1.58153 1.20946 0.87839 0.80746 0.80143 1.90766 1.32143 1.67723 1.45661 1.21685 0.95511 0.98921 0.99535 1.17865 0.91776 0.87089 0.97926 0.93191 1.21539 1.04848 1.14657 1.19659 0.93602 1.25577 1.02674 0.92427 0.96720 1.70733 1.24960 1.33637 1.24682 0.83597 0.75910 0.75397 0.75593 1.21833 1.21669 1.21090 1.20828 0.92918 0.95648 0.93907 1.20910 0.96376 1.00211 0.95092 1.21013 0.97227 0.97707 0.98875 1.20827 1.01182 1.00328 0.94725 1.20971 0.98302 0.99746 0.95230 1.21068 0.96058 0.97832 0.99770 1.22878 1.04189 0.95360 0.98654 1.20937 0.76105 0.87649 0.84268 1.90710 1.53470 1.75564 1.21177 0.92220 0.92117 0.91419 0.90006 0.90322 0.90566 0.89559 0.77000 0.91463 0.90075 0.91769 0.86727 0.87463 0.87593 0.87459 0.87153 0.87374 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.12 0.98 6.65 -4.04 -0.03 0.95 16 3 N -0.62 -6.19 2.93 -172.41 -0.51 -6.69 16 4 C 0.10 0.81 7.08 -3.12 -0.02 0.79 16 5 C 0.14 1.60 3.53 -66.31 -0.23 1.37 16 6 H 0.11 1.55 7.54 -51.93 -0.39 1.16 16 7 N -0.74 -8.98 5.15 -52.23 -0.27 -9.25 16 8 C 0.52 9.14 7.58 -10.99 -0.08 9.06 16 9 O -0.49 -11.32 14.66 5.56 0.08 -11.24 16 10 C -0.12 -2.05 4.94 -27.88 -0.14 -2.19 16 11 C 0.07 1.65 1.26 -92.92 -0.12 1.53 16 12 H 0.05 1.30 6.38 -51.93 -0.33 0.96 16 13 C -0.57 -14.87 6.41 -34.44 -0.22 -15.09 16 14 H 0.05 1.20 7.82 -52.49 -0.41 0.79 16 15 C 0.03 0.89 5.45 -17.82 -0.10 0.80 16 16 N -0.90 -27.06 13.62 55.43 0.75 -26.30 16 17 Si 1.07 25.73 29.91 -169.99 -5.08 20.65 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 C -0.03 -0.69 4.67 -104.62 -0.49 -1.18 16 22 C -0.11 -2.11 8.88 -39.58 -0.35 -2.46 16 23 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 24 C -0.15 -2.58 10.05 -39.58 -0.40 -2.97 16 25 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 26 C -0.13 -2.63 9.37 -39.59 -0.37 -3.00 16 27 C -0.17 -2.04 6.59 -26.75 -0.18 -2.21 16 28 C 0.52 6.81 8.02 -10.86 -0.09 6.72 16 29 O -0.53 -8.91 17.59 5.56 0.10 -8.81 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.48 7.80 -51.93 -0.40 0.08 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 3.45 8.43 -40.82 -0.34 3.11 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.32 7.85 -51.93 -0.41 0.91 16 40 H 0.27 7.98 6.37 -40.82 -0.26 7.72 16 41 H 0.11 2.16 7.80 -52.49 -0.41 1.75 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.11 2.22 7.95 -52.49 -0.42 1.81 16 46 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 47 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -34.83 391.09 -9.49 -44.32 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.23 Total: 5.56 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -3.23 Total: -14.13 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.02 Total: -42.25 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.83 -9.49 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452947192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.985 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds