Wall clock time and date at job start Tue Mar 31 2020 16:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46662 * 2 1 4 4 C 1.46767 * 124.34995 * 89.99925 * 3 2 1 5 5 C 1.54477 * 105.47112 * 196.99084 * 4 3 2 6 6 H 1.09002 * 110.97036 * 92.74335 * 5 4 3 7 7 N 1.46498 * 110.96780 * 216.46378 * 5 4 3 8 8 C 1.34776 * 120.00303 * 205.00284 * 7 5 4 9 9 O 1.21282 * 119.99551 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00203 * 180.02562 * 8 7 5 11 11 C 1.53009 * 109.46899 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46712 * 305.97851 * 11 10 8 13 13 C 1.50697 * 109.47213 * 65.98301 * 11 10 8 14 14 H 1.07998 * 119.99976 * 27.68287 * 13 11 10 15 15 C 1.37879 * 119.99790 * 207.67503 * 13 11 10 16 16 N 1.31511 * 120.00276 * 353.65574 * 15 13 11 17 17 Si 1.86799 * 119.99796 * 173.65117 * 15 13 11 18 18 H 1.48500 * 109.46923 * 90.00442 * 17 15 13 19 19 H 1.48503 * 109.47342 * 330.00258 * 17 15 13 20 20 H 1.48496 * 109.46992 * 210.00236 * 17 15 13 21 21 C 1.50704 * 109.46918 * 185.98574 * 11 10 8 22 22 C 1.38238 * 119.99653 * 295.91044 * 21 11 10 23 23 C 1.38240 * 119.99571 * 179.77015 * 22 21 11 24 24 C 1.38233 * 120.00178 * 0.50165 * 23 22 21 25 25 C 1.38235 * 119.99677 * 359.74830 * 24 23 22 26 26 C 1.38232 * 120.00417 * 0.02562 * 25 24 23 27 27 C 1.54620 * 101.76828 * 334.58527 * 5 4 3 28 28 C 1.34421 * 124.34820 * 269.97383 * 3 2 1 29 29 O 1.21274 * 124.94191 * 359.61195 * 28 3 2 30 30 H 1.09002 * 109.47451 * 300.00186 * 1 2 3 31 31 H 1.09004 * 109.46963 * 60.00525 * 1 2 3 32 32 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47340 * 240.00549 * 2 1 3 34 34 H 1.08998 * 109.47282 * 119.99792 * 2 1 3 35 35 H 1.09007 * 110.23963 * 77.99255 * 4 3 2 36 36 H 1.08994 * 110.24547 * 315.99505 * 4 3 2 37 37 H 0.97002 * 120.00140 * 25.00165 * 7 5 4 38 38 H 1.08997 * 109.47180 * 60.00292 * 10 8 7 39 39 H 1.08998 * 109.47221 * 299.99630 * 10 8 7 40 40 H 0.97006 * 119.99782 * 2.90335 * 16 15 13 41 41 H 1.07998 * 120.00335 * 359.97438 * 22 21 11 42 42 H 1.08001 * 119.99597 * 180.22561 * 23 22 21 43 43 H 1.07998 * 119.99817 * 179.72633 * 24 23 22 44 44 H 1.08006 * 119.99603 * 179.97438 * 25 24 23 45 45 H 1.07993 * 120.00301 * 179.97438 * 26 25 24 46 46 H 1.08996 * 110.48709 * 143.47556 * 27 5 4 47 47 H 1.09002 * 110.48619 * 266.12066 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2942 2.1621 1.2117 5 6 2.3533 3.6346 0.7485 6 1 1.3787 4.1133 0.8450 7 7 3.3747 4.3771 1.4911 8 6 3.2698 5.7138 1.6284 9 8 2.3294 6.3017 1.1377 10 6 4.3208 6.4777 2.3918 11 6 3.9655 7.9659 2.3985 12 1 3.8176 8.3087 1.3745 13 6 2.6985 8.1763 3.1868 14 1 2.4365 7.4924 3.9805 15 6 1.8739 9.2420 2.8948 16 7 2.2517 10.1443 2.0157 17 14 0.2199 9.4042 3.7477 18 1 0.3820 10.1920 4.9961 19 1 -0.3010 8.0535 4.0787 20 1 -0.7360 10.0962 2.8463 21 6 5.0873 8.7473 3.0326 22 6 5.4035 8.5465 4.3633 23 6 6.4357 9.2598 4.9437 24 6 7.1448 10.1814 4.1962 25 6 6.8252 10.3859 2.8670 26 6 5.7962 9.6692 2.2853 27 6 2.7510 3.4819 -0.7378 28 6 2.2715 2.0962 -1.1098 29 8 2.1354 1.6894 -2.2442 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2498 1.8637 1.6431 36 1 1.4929 2.0269 1.9381 37 1 4.1267 3.9068 1.8839 38 1 5.2905 6.3374 1.9142 39 1 4.3642 6.1103 3.4170 40 1 3.0914 10.0379 1.5418 41 1 4.8463 7.8300 4.9486 42 1 6.6850 9.1003 5.9823 43 1 7.9483 10.7418 4.6509 44 1 7.3790 11.1062 2.2831 45 1 5.5462 9.8293 1.2469 46 1 2.2501 4.2350 -1.3460 47 1 3.8325 3.5550 -0.8527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452947192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:45 Heat of formation + Delta-G solvation = -73.711646 kcal Electronic energy + Delta-G solvation = -27967.883873 eV Core-core repulsion = 24114.115725 eV Total energy + Delta-G solvation = -3853.768148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75686 -40.58817 -39.75380 -37.78238 -36.22430 -35.69421 -33.61198 -33.06256 -31.58102 -30.69924 -29.85635 -28.52420 -26.86179 -24.84088 -24.24977 -23.22192 -22.77718 -21.79961 -21.24477 -20.40020 -18.81070 -18.26211 -17.81349 -17.56475 -17.21565 -16.76576 -16.42584 -15.83242 -15.70664 -15.61440 -15.48023 -15.07288 -14.74327 -14.72067 -14.56350 -14.38526 -14.27794 -14.01406 -13.88448 -13.44074 -13.30204 -13.13959 -12.99526 -12.85274 -12.62012 -12.54397 -12.37566 -12.03695 -12.02864 -11.94334 -11.69022 -11.45872 -11.16748 -10.73190 -10.58312 -10.30588 -10.03045 -9.83487 -9.61489 -9.24152 -8.41481 -6.07610 0.70454 0.76481 1.39952 1.50162 1.61339 1.74344 1.81531 1.92741 2.26740 2.63884 3.13218 3.28287 3.41714 3.46302 3.75703 3.96176 4.11241 4.14326 4.16350 4.22464 4.30589 4.33247 4.47242 4.47746 4.49254 4.53636 4.55314 4.66931 4.76014 4.80509 4.84076 4.87376 4.91690 4.92691 5.15642 5.25195 5.26907 5.43686 5.46353 5.51887 5.53968 5.77353 5.85253 5.96400 5.98138 6.27052 6.34251 6.43639 6.71352 6.82118 7.00864 7.53186 7.68452 8.99295 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.003006 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.733590 B = 9314.013189 C =10417.067194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.612 5.612 4 C 0.107 3.893 5 C 0.139 3.861 6 H 0.086 0.914 7 N -0.711 5.711 8 C 0.517 3.483 9 O -0.556 6.556 10 C -0.111 4.111 11 C 0.073 3.927 12 H 0.004 0.996 13 C -0.555 4.555 14 H 0.044 0.956 15 C -0.026 4.026 16 N -0.945 5.945 17 Si 1.100 2.900 18 H -0.275 1.275 19 H -0.276 1.276 20 H -0.296 1.296 21 C -0.055 4.055 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.146 4.146 25 C -0.127 4.127 26 C -0.153 4.153 27 C -0.166 4.166 28 C 0.518 3.482 29 O -0.578 6.578 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.419 0.581 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.259 0.741 41 H 0.119 0.881 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.132 0.868 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -18.553 5.212 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.345 5.345 4 C -0.015 4.015 5 C 0.033 3.967 6 H 0.104 0.896 7 N -0.367 5.367 8 C 0.304 3.696 9 O -0.432 6.432 10 C -0.151 4.151 11 C 0.054 3.946 12 H 0.022 0.978 13 C -0.593 4.593 14 H 0.062 0.938 15 C -0.224 4.224 16 N -0.584 5.584 17 Si 0.925 3.075 18 H -0.201 1.201 19 H -0.201 1.201 20 H -0.222 1.222 21 C -0.055 4.055 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.164 4.164 25 C -0.145 4.145 26 C -0.172 4.172 27 C -0.208 4.208 28 C 0.306 3.694 29 O -0.459 6.459 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.257 0.743 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.137 0.863 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.966 -17.471 4.443 18.699 hybrid contribution 1.154 -0.570 -0.732 1.481 sum 6.120 -18.041 3.711 19.409 Atomic orbital electron populations 1.22153 0.95546 1.03379 1.01556 1.21590 0.94578 0.79817 1.04404 1.48453 1.64772 1.14627 1.06653 1.22431 1.05004 0.87190 0.86911 1.21533 0.93347 0.92559 0.89306 0.89617 1.45719 1.27599 1.06515 1.56870 1.20995 0.86874 0.82280 0.79403 1.90758 1.34554 1.69421 1.48453 1.21581 0.96655 0.95703 1.01181 1.17705 0.91565 0.90526 0.94844 0.97788 1.21826 1.05842 1.13044 1.18583 0.93804 1.26692 1.05497 0.93020 0.97236 1.70821 1.25157 1.35382 1.27035 0.83151 0.72945 0.76132 0.75243 1.20112 1.20103 1.22225 1.20648 0.93525 0.96353 0.95021 1.21026 0.97507 1.01165 0.94206 1.21416 0.95792 0.96540 1.00526 1.21295 1.01431 0.99667 0.93978 1.21284 0.97420 0.99491 0.96314 1.21120 0.97711 0.98900 0.99450 1.22796 1.04660 0.94609 0.98709 1.21000 0.76006 0.88018 0.84350 1.90682 1.55728 1.76405 1.23040 0.91651 0.95023 0.89330 0.91036 0.86586 0.86969 0.87471 0.74288 0.88719 0.87891 0.93037 0.86344 0.83914 0.83771 0.85035 0.88886 0.89788 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 71.98 0.74 -1.60 16 2 C 0.12 1.59 6.65 86.38 0.57 2.16 16 3 N -0.61 -11.01 2.93 -817.98 -2.40 -13.41 16 4 C 0.11 1.42 7.08 86.83 0.61 2.04 16 5 C 0.14 3.07 3.53 46.05 0.16 3.23 16 6 H 0.09 2.43 7.54 -2.39 -0.02 2.41 16 7 N -0.71 -16.06 5.15 -437.56 -2.25 -18.31 16 8 C 0.52 18.34 7.58 87.66 0.66 19.00 16 9 O -0.56 -26.80 14.66 -3.04 -0.04 -26.84 16 10 C -0.11 -3.86 4.94 29.85 0.15 -3.71 16 11 C 0.07 3.42 1.26 -12.28 -0.02 3.40 16 12 H 0.00 0.22 6.38 -2.39 -0.02 0.20 16 13 C -0.55 -29.63 6.41 25.60 0.16 -29.47 16 14 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 15 C -0.03 -1.51 5.45 84.66 0.46 -1.05 16 16 N -0.95 -59.47 13.62 21.45 0.29 -59.18 16 17 Si 1.10 52.93 29.91 68.60 2.05 54.99 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 21 C -0.05 -2.35 4.67 -19.86 -0.09 -2.45 16 22 C -0.12 -4.53 8.88 22.27 0.20 -4.33 16 23 C -0.12 -3.90 10.05 22.27 0.22 -3.67 16 24 C -0.15 -4.39 10.05 22.27 0.22 -4.17 16 25 C -0.13 -4.35 10.05 22.27 0.22 -4.12 16 26 C -0.15 -6.37 9.37 22.27 0.21 -6.17 16 27 C -0.17 -4.07 6.59 30.59 0.20 -3.87 16 28 C 0.52 13.52 8.02 87.90 0.71 14.23 16 29 O -0.58 -20.02 17.59 -3.01 -0.05 -20.08 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.17 7.92 -2.39 -0.02 1.15 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.81 7.80 -2.38 -0.02 0.79 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.42 5.78 8.43 -92.71 -0.78 5.00 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.10 3.12 7.85 -2.39 -0.02 3.10 16 40 H 0.26 16.36 6.37 -92.70 -0.59 15.77 16 41 H 0.12 4.24 7.80 -2.91 -0.02 4.21 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 45 H 0.09 4.04 7.95 -2.91 -0.02 4.02 16 46 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.12 2.60 8.08 -2.39 -0.02 2.58 16 Total: -1.00 -82.84 391.09 3.36 -79.48 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.37 Total: 23.89 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 5.40 Total: -20.54 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -4.36 Total: -90.90 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.10 Total: -46.92 kcal Atomic # 14 Polarization: 52.93 SS G_CDS: 2.05 Total: 54.99 kcal Total: -82.84 3.36 -79.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452947192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.771 kcal (2) G-P(sol) polarization free energy of solvation -82.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds