Wall clock time and date at job start Tue Mar 31 2020 16:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46647 * 2 1 4 4 C 1.46761 * 124.34812 * 269.71824 * 3 2 1 5 5 C 1.54661 * 105.38000 * 162.85612 * 4 3 2 6 6 H 1.09000 * 111.22828 * 267.58359 * 5 4 3 7 7 N 1.46503 * 110.81927 * 143.78050 * 5 4 3 8 8 C 1.34778 * 119.99908 * 161.35236 * 7 5 4 9 9 O 1.21277 * 120.00199 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99822 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47167 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47366 * 305.00622 * 11 10 8 13 13 C 1.50707 * 109.46950 * 64.99968 * 11 10 8 14 14 H 1.08002 * 119.99586 * 29.58496 * 13 11 10 15 15 C 1.37873 * 120.00212 * 209.58516 * 13 11 10 16 16 N 1.31517 * 119.99939 * 4.94100 * 15 13 11 17 17 Si 1.86800 * 120.00040 * 184.93855 * 15 13 11 18 18 H 1.48499 * 109.46819 * 90.00047 * 17 15 13 19 19 H 1.48504 * 109.47003 * 209.99841 * 17 15 13 20 20 H 1.48496 * 109.47149 * 330.00328 * 17 15 13 21 21 C 1.50693 * 109.47607 * 185.00173 * 11 10 8 22 22 C 1.38239 * 119.99887 * 296.77656 * 21 11 10 23 23 C 1.38240 * 120.00044 * 179.78792 * 22 21 11 24 24 C 1.38235 * 119.99880 * 0.43467 * 23 22 21 25 25 C 1.38240 * 119.99938 * 359.81520 * 24 23 22 26 26 C 1.38230 * 119.99956 * 359.97438 * 25 24 23 27 27 C 1.54631 * 101.68414 * 25.77377 * 5 4 3 28 28 C 1.34419 * 124.35077 * 90.02853 * 3 2 1 29 29 O 1.21284 * 124.93995 * 0.38174 * 28 3 2 30 30 H 1.08996 * 109.46979 * 300.00033 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00409 * 1 2 3 32 32 H 1.09003 * 109.46780 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46948 * 120.00098 * 2 1 3 34 34 H 1.08996 * 109.46979 * 239.99967 * 2 1 3 35 35 H 1.08996 * 110.25127 * 281.99392 * 4 3 2 36 36 H 1.09004 * 110.24333 * 43.99057 * 4 3 2 37 37 H 0.97001 * 120.00408 * 341.35277 * 7 5 4 38 38 H 1.08994 * 109.47109 * 299.99964 * 10 8 7 39 39 H 1.09003 * 109.46828 * 60.00396 * 10 8 7 40 40 H 0.97000 * 119.99975 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99654 * 359.97438 * 22 21 11 42 42 H 1.07996 * 120.00082 * 180.26999 * 23 22 21 43 43 H 1.07990 * 120.00022 * 179.83501 * 24 23 22 44 44 H 1.07994 * 120.00194 * 179.97438 * 25 24 23 45 45 H 1.08005 * 120.00055 * 179.97438 * 26 25 24 46 46 H 1.08998 * 110.48440 * 216.30700 * 27 5 4 47 47 H 1.08997 * 110.48610 * 93.65803 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3524 3.6347 -0.7485 6 1 1.3779 4.1134 -0.8441 7 7 3.3736 4.3776 -1.4912 8 6 3.3368 5.7245 -1.5238 9 8 2.4581 6.3215 -0.9387 10 6 4.3876 6.4887 -2.2873 11 6 4.1167 7.9895 -2.1645 12 1 3.0994 8.2032 -2.4927 13 6 4.2804 8.4137 -0.7277 14 1 4.9701 7.8872 -0.0845 15 6 3.5498 9.4737 -0.2342 16 7 2.6402 10.0526 -0.9873 17 14 3.8518 10.0876 1.5040 18 1 4.8983 11.1410 1.4820 19 1 2.5935 10.6513 2.0555 20 1 4.3038 8.9586 2.3561 21 6 5.0924 8.7483 -3.0265 22 6 6.4466 8.6872 -2.7558 23 6 7.3421 9.3798 -3.5492 24 6 6.8826 10.1407 -4.6079 25 6 5.5279 10.2059 -4.8755 26 6 4.6329 9.5099 -4.0847 27 6 2.7506 3.4821 0.7378 28 6 2.2715 2.0962 1.1098 29 8 2.1354 1.6894 2.2442 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.2574 1.8612 -1.6381 36 1 1.5020 2.0234 -1.9417 37 1 4.0762 3.9002 -1.9595 38 1 5.3716 6.2620 -1.8770 39 1 4.3562 6.1989 -3.3376 40 1 2.1259 10.7981 -0.6401 41 1 6.8053 8.0959 -1.9262 42 1 8.4004 9.3285 -3.3403 43 1 7.5819 10.6838 -5.2261 44 1 5.1688 10.8007 -5.7023 45 1 3.5745 9.5612 -4.2935 46 1 2.2495 4.2350 1.3462 47 1 3.8320 3.5554 0.8525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452947195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:54 Heat of formation + Delta-G solvation = -47.129818 kcal Electronic energy + Delta-G solvation = -27969.075947 eV Core-core repulsion = 24116.460473 eV Total energy + Delta-G solvation = -3852.615474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68230 -39.02654 -38.20180 -36.59175 -34.85571 -33.92146 -32.38309 -31.42233 -30.03002 -29.46503 -28.60213 -27.49808 -25.51698 -23.62817 -22.91933 -21.79474 -21.51972 -20.35528 -19.60983 -19.12970 -17.13738 -16.69426 -16.57720 -16.27117 -15.92127 -15.57441 -14.74454 -14.49302 -14.37272 -14.17648 -14.02692 -13.89938 -13.86778 -13.51595 -13.39163 -12.99753 -12.61197 -12.49889 -12.39980 -12.23456 -11.98772 -11.96056 -11.62381 -11.59271 -11.44891 -11.19183 -10.87761 -10.72995 -10.57765 -10.28151 -10.06504 -9.98390 -9.45646 -9.15718 -8.97234 -8.90425 -8.73146 -8.34082 -8.06653 -7.64250 -5.93685 -3.93255 2.26682 2.32040 2.50249 2.73615 3.37577 3.41599 3.44585 3.46651 3.49457 4.24215 4.41168 4.51495 4.72527 4.75379 4.81525 4.89058 4.97891 5.08871 5.19514 5.37897 5.42103 5.43117 5.58598 5.59385 5.64679 5.70963 5.82341 5.89269 5.94279 5.97876 6.05585 6.14959 6.26441 6.33661 6.39288 6.51197 6.73743 6.77261 6.88595 6.91993 7.01962 7.29156 7.42642 7.50738 7.86488 7.92696 7.94322 8.04846 8.05955 8.36872 8.98226 9.06395 9.68357 11.16266 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.003058 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.793480 B = 9153.057242 C =10390.530087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.099 3.901 5 C 0.143 3.857 6 H 0.108 0.892 7 N -0.742 5.742 8 C 0.514 3.486 9 O -0.486 6.486 10 C -0.121 4.121 11 C 0.079 3.921 12 H 0.073 0.927 13 C -0.492 4.492 14 H 0.050 0.950 15 C 0.078 3.922 16 N -0.880 5.880 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.023 4.023 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.155 4.155 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.169 4.169 28 C 0.522 3.478 29 O -0.533 6.533 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.395 0.605 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.259 0.741 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -16.083 -6.900 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.357 5.357 4 C -0.025 4.025 5 C 0.036 3.964 6 H 0.126 0.874 7 N -0.399 5.399 8 C 0.300 3.700 9 O -0.356 6.356 10 C -0.161 4.161 11 C 0.060 3.940 12 H 0.091 0.909 13 C -0.530 4.530 14 H 0.069 0.931 15 C -0.125 4.125 16 N -0.517 5.517 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.024 4.024 22 C -0.133 4.133 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.210 4.210 28 C 0.310 3.690 29 O -0.409 6.409 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.229 0.771 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.978 -15.733 -5.851 16.815 hybrid contribution 0.553 0.323 0.758 0.993 sum 1.531 -15.411 -5.093 16.303 Atomic orbital electron populations 1.22171 0.95734 1.02281 1.02722 1.21330 0.94444 0.81144 1.03044 1.48340 1.66344 1.13929 1.07124 1.22329 1.02101 0.90432 0.87590 1.21587 0.94640 0.90299 0.89880 0.87427 1.46197 1.30787 1.07237 1.55649 1.20984 0.87204 0.80583 0.81197 1.90791 1.35597 1.67454 1.41729 1.21779 0.97043 0.99354 0.97949 1.17834 0.95555 0.85712 0.94907 0.90890 1.20675 1.23509 1.15083 0.93710 0.93128 1.24800 0.94247 0.96683 0.96812 1.69897 1.22180 1.23012 1.36616 0.86728 0.77509 0.79017 0.85518 1.20905 1.21342 1.19996 1.20760 0.94492 0.95480 0.91667 1.20958 0.93371 1.00263 0.98675 1.20984 0.98660 0.98866 0.96543 1.20802 0.95387 1.01812 0.99323 1.20989 0.93566 1.00210 0.99903 1.21101 0.99128 0.98027 0.95477 1.22882 1.04381 0.95102 0.98684 1.21004 0.75987 0.87728 0.84237 1.90710 1.53387 1.75603 1.21205 0.92114 0.92282 0.91469 0.90044 0.90368 0.90554 0.89685 0.77096 0.90403 0.91495 0.93143 0.86845 0.87669 0.87816 0.87645 0.86791 0.87217 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 2 C 0.12 0.99 6.65 -4.04 -0.03 0.97 16 3 N -0.62 -6.33 2.93 -172.30 -0.51 -6.84 16 4 C 0.10 0.81 7.06 -3.03 -0.02 0.78 16 5 C 0.14 1.65 3.44 -66.20 -0.23 1.42 16 6 H 0.11 1.44 7.72 -51.93 -0.40 1.04 16 7 N -0.74 -9.07 5.18 -52.13 -0.27 -9.34 16 8 C 0.51 9.12 7.58 -10.98 -0.08 9.04 16 9 O -0.49 -11.22 14.73 5.56 0.08 -11.14 16 10 C -0.12 -2.13 4.94 -27.88 -0.14 -2.27 16 11 C 0.08 1.79 1.68 -92.92 -0.16 1.64 16 12 H 0.07 1.92 6.95 -51.93 -0.36 1.56 16 13 C -0.49 -12.79 6.38 -34.44 -0.22 -13.01 16 14 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 15 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 16 N -0.88 -25.42 12.85 55.43 0.71 -24.71 16 17 Si 0.88 21.97 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.02 -0.49 4.77 -104.63 -0.50 -0.99 16 22 C -0.11 -2.22 8.86 -39.58 -0.35 -2.58 16 23 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 24 C -0.16 -2.62 10.05 -39.58 -0.40 -3.02 16 25 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.12 -2.43 9.67 -39.59 -0.38 -2.82 16 27 C -0.17 -2.23 6.59 -26.74 -0.18 -2.40 16 28 C 0.52 7.15 8.02 -10.86 -0.09 7.07 16 29 O -0.53 -9.31 17.59 5.55 0.10 -9.22 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.48 7.77 -51.93 -0.40 0.07 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.39 3.46 8.36 -40.82 -0.34 3.11 16 38 H 0.08 1.26 7.76 -51.93 -0.40 0.85 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.11 2.11 7.75 -52.49 -0.41 1.70 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 45 H 0.11 2.35 7.95 -52.48 -0.42 1.94 16 46 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 47 H 0.11 1.38 8.08 -51.93 -0.42 0.96 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -34.08 393.20 -9.60 -43.68 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.34 Total: 5.15 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.28 Total: -10.45 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -0.06 Total: -40.89 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.18 Total: -20.36 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.08 -9.60 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452947195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.448 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds