Wall clock time and date at job start Tue Mar 31 2020 16:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46647 * 2 1 4 4 C 1.46761 * 124.34812 * 269.71824 * 3 2 1 5 5 C 1.54661 * 105.38000 * 162.85612 * 4 3 2 6 6 H 1.09000 * 111.22828 * 267.58359 * 5 4 3 7 7 N 1.46503 * 110.81927 * 143.78050 * 5 4 3 8 8 C 1.34778 * 119.99908 * 161.35236 * 7 5 4 9 9 O 1.21277 * 120.00199 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99822 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47167 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47366 * 305.00622 * 11 10 8 13 13 C 1.50707 * 109.46950 * 64.99968 * 11 10 8 14 14 H 1.08002 * 119.99586 * 29.58496 * 13 11 10 15 15 C 1.37873 * 120.00212 * 209.58516 * 13 11 10 16 16 N 1.31517 * 119.99939 * 4.94100 * 15 13 11 17 17 Si 1.86800 * 120.00040 * 184.93855 * 15 13 11 18 18 H 1.48499 * 109.46819 * 90.00047 * 17 15 13 19 19 H 1.48504 * 109.47003 * 209.99841 * 17 15 13 20 20 H 1.48496 * 109.47149 * 330.00328 * 17 15 13 21 21 C 1.50693 * 109.47607 * 185.00173 * 11 10 8 22 22 C 1.38239 * 119.99887 * 296.77656 * 21 11 10 23 23 C 1.38240 * 120.00044 * 179.78792 * 22 21 11 24 24 C 1.38235 * 119.99880 * 0.43467 * 23 22 21 25 25 C 1.38240 * 119.99938 * 359.81520 * 24 23 22 26 26 C 1.38230 * 119.99956 * 359.97438 * 25 24 23 27 27 C 1.54631 * 101.68414 * 25.77377 * 5 4 3 28 28 C 1.34419 * 124.35077 * 90.02853 * 3 2 1 29 29 O 1.21284 * 124.93995 * 0.38174 * 28 3 2 30 30 H 1.08996 * 109.46979 * 300.00033 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00409 * 1 2 3 32 32 H 1.09003 * 109.46780 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46948 * 120.00098 * 2 1 3 34 34 H 1.08996 * 109.46979 * 239.99967 * 2 1 3 35 35 H 1.08996 * 110.25127 * 281.99392 * 4 3 2 36 36 H 1.09004 * 110.24333 * 43.99057 * 4 3 2 37 37 H 0.97001 * 120.00408 * 341.35277 * 7 5 4 38 38 H 1.08994 * 109.47109 * 299.99964 * 10 8 7 39 39 H 1.09003 * 109.46828 * 60.00396 * 10 8 7 40 40 H 0.97000 * 119.99975 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99654 * 359.97438 * 22 21 11 42 42 H 1.07996 * 120.00082 * 180.26999 * 23 22 21 43 43 H 1.07990 * 120.00022 * 179.83501 * 24 23 22 44 44 H 1.07994 * 120.00194 * 179.97438 * 25 24 23 45 45 H 1.08005 * 120.00055 * 179.97438 * 26 25 24 46 46 H 1.08998 * 110.48440 * 216.30700 * 27 5 4 47 47 H 1.08997 * 110.48610 * 93.65803 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3524 3.6347 -0.7485 6 1 1.3779 4.1134 -0.8441 7 7 3.3736 4.3776 -1.4912 8 6 3.3368 5.7245 -1.5238 9 8 2.4581 6.3215 -0.9387 10 6 4.3876 6.4887 -2.2873 11 6 4.1167 7.9895 -2.1645 12 1 3.0994 8.2032 -2.4927 13 6 4.2804 8.4137 -0.7277 14 1 4.9701 7.8872 -0.0845 15 6 3.5498 9.4737 -0.2342 16 7 2.6402 10.0526 -0.9873 17 14 3.8518 10.0876 1.5040 18 1 4.8983 11.1410 1.4820 19 1 2.5935 10.6513 2.0555 20 1 4.3038 8.9586 2.3561 21 6 5.0924 8.7483 -3.0265 22 6 6.4466 8.6872 -2.7558 23 6 7.3421 9.3798 -3.5492 24 6 6.8826 10.1407 -4.6079 25 6 5.5279 10.2059 -4.8755 26 6 4.6329 9.5099 -4.0847 27 6 2.7506 3.4821 0.7378 28 6 2.2715 2.0962 1.1098 29 8 2.1354 1.6894 2.2442 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.2574 1.8612 -1.6381 36 1 1.5020 2.0234 -1.9417 37 1 4.0762 3.9002 -1.9595 38 1 5.3716 6.2620 -1.8770 39 1 4.3562 6.1989 -3.3376 40 1 2.1259 10.7981 -0.6401 41 1 6.8053 8.0959 -1.9262 42 1 8.4004 9.3285 -3.3403 43 1 7.5819 10.6838 -5.2261 44 1 5.1688 10.8007 -5.7023 45 1 3.5745 9.5612 -4.2935 46 1 2.2495 4.2350 1.3462 47 1 3.8320 3.5554 0.8525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452947195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:53 Heat of formation + Delta-G solvation = -68.992168 kcal Electronic energy + Delta-G solvation = -27970.023970 eV Core-core repulsion = 24116.460473 eV Total energy + Delta-G solvation = -3853.563496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.71161 -40.44785 -39.62807 -37.73730 -36.01326 -35.52522 -33.58507 -33.14538 -31.46710 -30.60481 -29.80104 -28.52734 -27.27364 -24.72290 -24.18501 -23.14369 -22.71589 -21.65761 -20.97903 -20.29841 -18.53073 -18.13395 -17.74052 -17.61600 -17.11687 -16.71583 -16.45075 -15.99690 -15.65044 -15.58953 -15.37276 -15.01253 -14.70718 -14.62728 -14.48835 -14.27932 -14.13734 -13.93036 -13.58221 -13.48857 -13.29911 -13.13624 -12.90838 -12.83529 -12.75567 -12.51199 -12.41322 -12.33297 -12.00145 -11.80150 -11.64421 -11.26121 -11.12624 -10.93869 -10.55884 -10.34665 -9.95184 -9.80757 -9.50956 -9.16223 -8.01433 -6.03036 0.81176 0.87078 1.36693 1.39336 1.41894 1.45502 1.87839 2.02350 2.35283 2.47497 3.21452 3.31245 3.39025 3.51082 3.80483 4.00135 4.14243 4.24826 4.26014 4.29671 4.39116 4.45550 4.49560 4.52775 4.58528 4.60100 4.71136 4.78323 4.82482 4.83494 4.91450 4.95509 4.97248 5.05073 5.27264 5.29429 5.41857 5.54958 5.55907 5.62182 5.71902 5.82222 5.87259 5.98357 5.99804 6.21516 6.45600 6.50011 6.82261 7.03199 7.05744 7.59140 7.66109 9.07889 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.003058 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.793480 B = 9153.057242 C =10390.530087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.611 5.611 4 C 0.109 3.891 5 C 0.143 3.857 6 H 0.086 0.914 7 N -0.714 5.714 8 C 0.514 3.486 9 O -0.551 6.551 10 C -0.116 4.116 11 C 0.081 3.919 12 H 0.025 0.975 13 C -0.481 4.481 14 H 0.047 0.953 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.928 3.072 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.273 1.273 21 C -0.046 4.046 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.148 4.148 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.169 4.169 28 C 0.518 3.482 29 O -0.580 6.580 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.418 0.582 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.252 0.748 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.130 0.870 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -17.957 -9.361 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.345 5.345 4 C -0.013 4.013 5 C 0.036 3.964 6 H 0.104 0.896 7 N -0.371 5.371 8 C 0.302 3.698 9 O -0.425 6.425 10 C -0.156 4.156 11 C 0.062 3.938 12 H 0.044 0.956 13 C -0.519 4.519 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.556 5.556 17 Si 0.755 3.245 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.198 1.198 21 C -0.047 4.047 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.166 4.166 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.210 4.210 28 C 0.306 3.694 29 O -0.461 6.461 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.257 0.743 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.148 0.852 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.820 -17.680 -8.372 19.932 hybrid contribution -0.264 0.837 1.417 1.667 sum 3.556 -16.844 -6.955 18.567 Atomic orbital electron populations 1.22150 0.95469 1.03363 1.01596 1.21593 0.94636 0.79781 1.04382 1.48442 1.64703 1.14687 1.06647 1.22473 1.05137 0.86901 0.86834 1.21556 0.93238 0.92609 0.88962 0.89563 1.45773 1.31171 1.05547 1.54561 1.21063 0.86283 0.82151 0.80350 1.90784 1.37996 1.69205 1.44559 1.21664 0.97798 0.96062 1.00059 1.17623 0.93720 0.89296 0.93208 0.95615 1.21005 1.21747 1.13636 0.95501 0.93495 1.25427 0.94841 0.97753 0.99433 1.70038 1.23811 1.23908 1.37817 0.86028 0.77084 0.78657 0.82684 1.20151 1.22104 1.19768 1.20586 0.95163 0.96384 0.92526 1.21062 0.92754 1.01167 0.99423 1.21375 1.00058 0.97454 0.95661 1.21255 0.95355 1.00899 0.99117 1.21279 0.93971 0.99575 0.99933 1.21116 0.98860 0.99430 0.96766 1.22799 1.04340 0.94490 0.99400 1.21002 0.75956 0.88005 0.84405 1.90678 1.55756 1.76445 1.23177 0.95164 0.91408 0.89358 0.91287 0.86403 0.86928 0.86920 0.74341 0.88319 0.88423 0.93917 0.86409 0.84251 0.84076 0.85209 0.88765 0.90304 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 71.98 0.74 -1.55 16 2 C 0.12 1.60 6.65 86.38 0.57 2.17 16 3 N -0.61 -11.23 2.93 -817.63 -2.40 -13.63 16 4 C 0.11 1.39 7.06 86.90 0.61 2.00 16 5 C 0.14 3.19 3.44 46.11 0.16 3.35 16 6 H 0.09 2.37 7.72 -2.39 -0.02 2.35 16 7 N -0.71 -16.23 5.18 -437.23 -2.27 -18.49 16 8 C 0.51 18.29 7.58 87.66 0.66 18.96 16 9 O -0.55 -26.70 14.73 -3.02 -0.04 -26.75 16 10 C -0.12 -3.99 4.94 29.85 0.15 -3.85 16 11 C 0.08 3.77 1.68 -12.29 -0.02 3.75 16 12 H 0.03 1.43 6.95 -2.39 -0.02 1.42 16 13 C -0.48 -25.68 6.38 25.60 0.16 -25.51 16 14 H 0.05 2.47 7.82 -2.91 -0.02 2.45 16 15 C 0.02 1.38 5.45 84.65 0.46 1.84 16 16 N -0.92 -55.75 12.85 21.45 0.28 -55.48 16 17 Si 0.93 46.45 29.54 68.60 2.03 48.47 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 19 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 20 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 21 C -0.05 -1.96 4.77 -19.87 -0.09 -2.05 16 22 C -0.13 -4.66 8.86 22.27 0.20 -4.46 16 23 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 24 C -0.15 -4.44 10.05 22.27 0.22 -4.21 16 25 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 26 C -0.14 -5.92 9.67 22.27 0.22 -5.70 16 27 C -0.17 -4.56 6.59 30.59 0.20 -4.36 16 28 C 0.52 14.30 8.02 87.90 0.70 15.01 16 29 O -0.58 -21.11 17.59 -3.04 -0.05 -21.16 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.16 7.92 -2.39 -0.02 1.14 16 34 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.76 7.77 -2.39 -0.02 0.74 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.42 5.77 8.36 -92.71 -0.78 4.99 16 38 H 0.10 2.99 7.76 -2.39 -0.02 2.97 16 39 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.12 4.16 7.75 -2.91 -0.02 4.13 16 42 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.14 3.19 8.06 -2.92 -0.02 3.17 16 44 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 45 H 0.09 4.14 7.95 -2.91 -0.02 4.11 16 46 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.11 2.90 8.08 -2.39 -0.02 2.88 16 Total: -1.00 -81.51 393.20 3.13 -78.39 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.19 Total: 21.17 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.40 Total: -12.52 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -4.39 Total: -87.60 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.10 Total: -47.91 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -81.51 3.13 -78.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452947195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.393 kcal (2) G-P(sol) polarization free energy of solvation -81.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds