Wall clock time and date at job start Tue Mar 31 2020 16:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47115 * 2 1 4 4 C 1.46507 * 119.99807 * 94.02985 * 3 2 1 5 5 C 1.52998 * 109.47156 * 90.00230 * 4 3 2 6 6 C 1.53783 * 113.61412 * 85.86164 * 5 4 3 7 7 C 1.54048 * 86.98341 * 140.01976 * 6 5 4 8 8 C 1.53774 * 113.61511 * 183.47071 * 5 4 3 9 9 C 1.34768 * 120.00255 * 274.03220 * 3 2 1 10 10 O 1.21361 * 120.00505 * 185.04847 * 9 3 2 11 11 C 1.49358 * 119.99845 * 5.05154 * 9 3 2 12 12 O 1.21370 * 120.00183 * 5.61743 * 11 9 3 13 13 N 1.34785 * 119.99541 * 185.61854 * 11 9 3 14 14 C 1.39744 * 119.99549 * 174.54631 * 13 11 9 15 15 C 1.39341 * 119.94944 * 145.66301 * 14 13 11 16 16 C 1.38474 * 120.42061 * 179.97438 * 15 14 13 17 17 C 1.37690 * 120.33268 * 359.97438 * 16 15 14 18 18 C 1.40749 * 119.89221 * 0.02562 * 17 16 15 19 19 C 1.41416 * 120.20624 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99816 * 210.15462 * 19 18 17 21 21 C 1.39927 * 119.99959 * 30.15446 * 19 18 17 22 22 N 1.30828 * 120.00490 * 9.20733 * 21 19 18 23 23 Si 1.86808 * 119.99672 * 189.21185 * 21 19 18 24 24 H 1.48491 * 109.47242 * 90.00047 * 23 21 19 25 25 H 1.48502 * 109.46491 * 209.99860 * 23 21 19 26 26 H 1.48504 * 109.47137 * 329.99494 * 23 21 19 27 27 C 1.38304 * 119.95594 * 325.39483 * 14 13 11 28 28 H 1.09004 * 109.47241 * 59.99826 * 1 2 3 29 29 H 1.08999 * 109.46736 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47203 * 299.99648 * 1 2 3 31 31 H 1.08998 * 109.47203 * 240.00352 * 2 1 3 32 32 H 1.09000 * 109.47108 * 119.99683 * 2 1 3 33 33 H 1.09000 * 109.46967 * 329.99763 * 4 3 2 34 34 H 1.08998 * 109.47019 * 210.00155 * 4 3 2 35 35 H 1.08999 * 112.84535 * 314.66406 * 5 4 3 36 36 H 1.08998 * 113.61171 * 254.61048 * 6 5 4 37 37 H 1.08999 * 113.61323 * 25.51859 * 6 5 4 38 38 H 1.08992 * 113.62001 * 220.01925 * 7 6 5 39 39 H 1.09003 * 113.61516 * 89.11655 * 7 6 5 40 40 H 1.08998 * 113.61633 * 334.48302 * 8 5 4 41 41 H 1.08999 * 113.61736 * 105.30125 * 8 5 4 42 42 H 0.96990 * 120.00358 * 354.54786 * 13 11 9 43 43 H 1.07998 * 119.79076 * 359.96188 * 15 14 13 44 44 H 1.08001 * 119.83671 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.05789 * 179.97438 * 17 16 15 46 46 H 0.96994 * 120.00493 * 180.02562 * 22 21 19 47 47 H 1.08004 * 120.15874 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3466 2.0421 1.2657 5 6 3.8175 1.7926 1.6049 6 6 4.7792 2.8016 0.9553 7 6 5.5604 2.7881 2.2829 8 6 4.2441 2.3755 2.9624 9 6 2.1656 2.0439 -1.1642 10 8 2.6558 3.1541 -1.1728 11 6 1.7254 1.4121 -2.4440 12 8 1.1432 0.3474 -2.4263 13 7 1.9749 2.0245 -3.6185 14 6 1.6662 1.3822 -4.8206 15 6 1.2305 2.1266 -5.9150 16 6 0.9224 1.5003 -7.1110 17 6 1.0439 0.1341 -7.2320 18 6 1.4828 -0.6310 -6.1352 19 6 1.6105 -2.0345 -6.2523 20 1 1.4635 -2.6641 -5.3871 21 6 1.9271 -2.6074 -7.4890 22 7 2.2812 -1.8453 -8.4917 23 14 1.8441 -4.4607 -7.7083 24 1 0.4824 -4.8454 -8.1588 25 1 2.8399 -4.8837 -8.7255 26 1 2.1442 -5.1262 -6.4151 27 6 1.7988 0.0095 -4.9241 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7173 1.6398 2.0595 34 1 2.1721 3.1139 1.1718 35 1 4.1140 0.7533 1.4633 36 1 5.3383 2.3924 0.1139 37 1 4.3170 3.7628 0.7305 38 1 5.9200 3.7707 2.5881 39 1 6.3336 2.0209 2.3268 40 1 3.6359 3.2204 3.2853 41 1 4.3700 1.6228 3.7406 42 1 2.3687 2.9107 -3.6294 43 1 1.1322 3.1987 -5.8299 44 1 0.5859 2.0864 -7.9534 45 1 0.8020 -0.3498 -8.1668 46 1 2.5003 -2.2424 -9.3490 47 1 2.1402 -0.5680 -4.0777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453737284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:06 Heat of formation + Delta-G solvation = -21.981761 kcal Electronic energy + Delta-G solvation = -28284.085323 eV Core-core repulsion = 24432.560351 eV Total energy + Delta-G solvation = -3851.524972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86667 -39.31344 -38.24017 -37.18112 -36.13252 -34.38848 -33.00151 -30.96365 -29.86101 -28.91809 -28.16627 -25.75163 -25.35736 -24.75087 -23.50386 -22.58564 -21.09399 -20.49929 -19.55375 -19.26750 -17.92118 -17.32405 -16.82097 -15.94937 -15.71312 -15.52970 -15.28994 -15.01046 -14.80771 -14.57307 -14.30116 -13.73188 -13.52118 -13.25558 -13.05256 -12.91077 -12.67340 -12.56964 -12.22697 -12.20910 -11.92512 -11.72025 -11.63727 -11.33278 -11.17752 -11.13249 -10.96406 -10.95445 -10.73572 -10.56621 -10.47000 -10.37956 -10.06172 -9.64137 -9.37217 -9.10618 -8.91236 -8.77962 -7.46175 -6.98800 -6.67854 -4.38873 1.57769 2.47363 2.75857 2.91993 3.09168 3.12912 3.18751 3.56051 3.69341 3.96354 4.39290 4.48198 4.53670 4.63657 4.66364 4.72194 5.02249 5.15088 5.17402 5.27572 5.44706 5.50339 5.54702 5.61050 5.64474 5.68774 5.71794 5.80558 5.94349 6.00675 6.09398 6.19502 6.27551 6.33338 6.35032 6.46888 6.66206 6.85867 6.95896 7.01868 7.09315 7.23625 7.41000 7.64304 7.79951 7.89405 8.05316 8.08690 8.18459 8.47325 8.64381 8.90863 8.93563 10.25443 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.002852 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.943217 B = 9815.798095 C =10390.306168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.584 5.584 4 C 0.124 3.876 5 C -0.129 4.129 6 C -0.127 4.127 7 C -0.145 4.145 8 C -0.131 4.131 9 C 0.510 3.490 10 O -0.522 6.522 11 C 0.493 3.507 12 O -0.490 6.490 13 N -0.635 5.635 14 C 0.143 3.857 15 C -0.249 4.249 16 C -0.095 4.095 17 C -0.160 4.160 18 C 0.119 3.881 19 C -0.460 4.460 20 H 0.078 0.922 21 C 0.073 3.927 22 N -0.805 5.805 23 Si 0.912 3.088 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.202 4.202 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.409 0.591 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.279 0.721 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 5.624 17.640 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.318 5.318 4 C 0.002 3.998 5 C -0.149 4.149 6 C -0.164 4.164 7 C -0.183 4.183 8 C -0.170 4.170 9 C 0.293 3.707 10 O -0.399 6.399 11 C 0.275 3.725 12 O -0.365 6.365 13 N -0.280 5.280 14 C 0.051 3.949 15 C -0.270 4.270 16 C -0.114 4.114 17 C -0.180 4.180 18 C 0.116 3.884 19 C -0.490 4.490 20 H 0.096 0.904 21 C -0.143 4.143 22 N -0.431 5.431 23 Si 0.737 3.263 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.223 4.223 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.245 0.755 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.139 0.861 46 H 0.090 0.910 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.680 5.417 17.442 18.341 hybrid contribution 0.235 -0.404 -0.182 0.502 sum 1.915 5.013 17.260 18.075 Atomic orbital electron populations 1.22099 0.95247 1.02546 1.01886 1.21970 0.95405 0.80790 1.03966 1.47856 1.63575 1.15012 1.05330 1.21616 0.95035 0.98811 0.84356 1.22980 0.94861 1.00043 0.96967 1.22958 0.97281 0.99841 0.96339 1.22878 0.96566 1.01476 0.97332 1.22860 0.97502 1.00698 0.95893 1.20307 0.79402 0.85778 0.85222 1.90711 1.42763 1.19598 1.86783 1.19991 0.81469 0.86157 0.84908 1.90760 1.38493 1.20832 1.86411 1.43159 1.60116 1.20500 1.04204 1.17446 1.01452 0.92473 0.83514 1.20117 1.15044 0.97376 0.94474 1.20506 1.00419 0.95151 0.95336 1.21438 1.03643 0.92324 1.00547 1.17491 0.87396 0.93477 0.90021 1.19550 1.42298 0.91949 0.95227 0.90419 1.25873 0.92579 1.00567 0.95296 1.69780 1.33273 1.37338 1.02697 0.86255 0.78788 0.82319 0.78987 1.19373 1.20362 1.18674 1.21010 1.10021 0.91456 0.99849 0.91227 0.91517 0.93684 0.87633 0.91115 0.90161 0.89695 0.89108 0.91889 0.89342 0.91579 0.90450 0.90031 0.91523 0.75486 0.88983 0.88793 0.86054 0.91006 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.67 37.16 0.36 -1.54 16 2 C 0.10 1.19 5.68 -4.04 -0.02 1.17 16 3 N -0.58 -7.30 2.48 -174.23 -0.43 -7.73 16 4 C 0.12 1.23 5.19 -4.04 -0.02 1.21 16 5 C -0.13 -1.20 3.96 -89.81 -0.36 -1.56 16 6 C -0.13 -1.33 6.81 -25.78 -0.18 -1.50 16 7 C -0.15 -1.20 8.09 -25.78 -0.21 -1.41 16 8 C -0.13 -0.99 7.64 -25.92 -0.20 -1.18 16 9 C 0.51 7.83 7.70 -11.63 -0.09 7.74 16 10 O -0.52 -8.45 14.89 5.49 0.08 -8.37 16 11 C 0.49 8.85 7.37 -11.62 -0.09 8.76 16 12 O -0.49 -9.60 9.19 5.48 0.05 -9.55 16 13 N -0.63 -11.87 5.32 -10.34 -0.06 -11.92 16 14 C 0.14 3.18 6.25 -83.82 -0.52 2.66 16 15 C -0.25 -5.44 9.97 -39.08 -0.39 -5.83 16 16 C -0.10 -2.18 10.01 -39.69 -0.40 -2.58 16 17 C -0.16 -4.11 8.65 -38.83 -0.34 -4.45 16 18 C 0.12 3.19 5.54 -106.85 -0.59 2.59 16 19 C -0.46 -12.30 9.06 -37.74 -0.34 -12.64 16 20 H 0.08 2.03 7.86 -52.48 -0.41 1.62 16 21 C 0.07 1.84 5.27 -17.35 -0.09 1.75 16 22 N -0.80 -20.78 10.85 55.55 0.60 -20.17 16 23 Si 0.91 18.88 29.57 -169.99 -5.03 13.85 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 27 C -0.20 -5.04 8.39 -38.67 -0.32 -5.37 16 28 H 0.07 1.03 6.48 -51.93 -0.34 0.69 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.11 1.52 5.82 -51.93 -0.30 1.22 16 32 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 33 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.08 0.90 7.23 -51.93 -0.38 0.53 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.02 7.55 -51.93 -0.39 0.63 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.41 6.73 8.30 -40.82 -0.34 6.39 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.12 3.22 6.27 -52.49 -0.33 2.89 16 46 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 47 H 0.11 2.66 6.50 -52.48 -0.34 2.32 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -28.44 380.51 -9.86 -38.30 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.02 Total: 12.05 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.79 Total: -12.19 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.12 Total: -39.83 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.13 Total: -17.91 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.44 -9.86 -38.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453737284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.318 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds