Wall clock time and date at job start Tue Mar 31 2020 16:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47115 * 2 1 4 4 C 1.46507 * 119.99807 * 94.02985 * 3 2 1 5 5 C 1.52998 * 109.47156 * 90.00230 * 4 3 2 6 6 C 1.53783 * 113.61412 * 85.86164 * 5 4 3 7 7 C 1.54048 * 86.98341 * 140.01976 * 6 5 4 8 8 C 1.53774 * 113.61511 * 183.47071 * 5 4 3 9 9 C 1.34768 * 120.00255 * 274.03220 * 3 2 1 10 10 O 1.21361 * 120.00505 * 185.04847 * 9 3 2 11 11 C 1.49358 * 119.99845 * 5.05154 * 9 3 2 12 12 O 1.21370 * 120.00183 * 5.61743 * 11 9 3 13 13 N 1.34785 * 119.99541 * 185.61854 * 11 9 3 14 14 C 1.39744 * 119.99549 * 174.54631 * 13 11 9 15 15 C 1.39341 * 119.94944 * 145.66301 * 14 13 11 16 16 C 1.38474 * 120.42061 * 179.97438 * 15 14 13 17 17 C 1.37690 * 120.33268 * 359.97438 * 16 15 14 18 18 C 1.40749 * 119.89221 * 0.02562 * 17 16 15 19 19 C 1.41416 * 120.20624 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99816 * 210.15462 * 19 18 17 21 21 C 1.39927 * 119.99959 * 30.15446 * 19 18 17 22 22 N 1.30828 * 120.00490 * 9.20733 * 21 19 18 23 23 Si 1.86808 * 119.99672 * 189.21185 * 21 19 18 24 24 H 1.48491 * 109.47242 * 90.00047 * 23 21 19 25 25 H 1.48502 * 109.46491 * 209.99860 * 23 21 19 26 26 H 1.48504 * 109.47137 * 329.99494 * 23 21 19 27 27 C 1.38304 * 119.95594 * 325.39483 * 14 13 11 28 28 H 1.09004 * 109.47241 * 59.99826 * 1 2 3 29 29 H 1.08999 * 109.46736 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47203 * 299.99648 * 1 2 3 31 31 H 1.08998 * 109.47203 * 240.00352 * 2 1 3 32 32 H 1.09000 * 109.47108 * 119.99683 * 2 1 3 33 33 H 1.09000 * 109.46967 * 329.99763 * 4 3 2 34 34 H 1.08998 * 109.47019 * 210.00155 * 4 3 2 35 35 H 1.08999 * 112.84535 * 314.66406 * 5 4 3 36 36 H 1.08998 * 113.61171 * 254.61048 * 6 5 4 37 37 H 1.08999 * 113.61323 * 25.51859 * 6 5 4 38 38 H 1.08992 * 113.62001 * 220.01925 * 7 6 5 39 39 H 1.09003 * 113.61516 * 89.11655 * 7 6 5 40 40 H 1.08998 * 113.61633 * 334.48302 * 8 5 4 41 41 H 1.08999 * 113.61736 * 105.30125 * 8 5 4 42 42 H 0.96990 * 120.00358 * 354.54786 * 13 11 9 43 43 H 1.07998 * 119.79076 * 359.96188 * 15 14 13 44 44 H 1.08001 * 119.83671 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.05789 * 179.97438 * 17 16 15 46 46 H 0.96994 * 120.00493 * 180.02562 * 22 21 19 47 47 H 1.08004 * 120.15874 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3466 2.0421 1.2657 5 6 3.8175 1.7926 1.6049 6 6 4.7792 2.8016 0.9553 7 6 5.5604 2.7881 2.2829 8 6 4.2441 2.3755 2.9624 9 6 2.1656 2.0439 -1.1642 10 8 2.6558 3.1541 -1.1728 11 6 1.7254 1.4121 -2.4440 12 8 1.1432 0.3474 -2.4263 13 7 1.9749 2.0245 -3.6185 14 6 1.6662 1.3822 -4.8206 15 6 1.2305 2.1266 -5.9150 16 6 0.9224 1.5003 -7.1110 17 6 1.0439 0.1341 -7.2320 18 6 1.4828 -0.6310 -6.1352 19 6 1.6105 -2.0345 -6.2523 20 1 1.4635 -2.6641 -5.3871 21 6 1.9271 -2.6074 -7.4890 22 7 2.2812 -1.8453 -8.4917 23 14 1.8441 -4.4607 -7.7083 24 1 0.4824 -4.8454 -8.1588 25 1 2.8399 -4.8837 -8.7255 26 1 2.1442 -5.1262 -6.4151 27 6 1.7988 0.0095 -4.9241 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7173 1.6398 2.0595 34 1 2.1721 3.1139 1.1718 35 1 4.1140 0.7533 1.4633 36 1 5.3383 2.3924 0.1139 37 1 4.3170 3.7628 0.7305 38 1 5.9200 3.7707 2.5881 39 1 6.3336 2.0209 2.3268 40 1 3.6359 3.2204 3.2853 41 1 4.3700 1.6228 3.7406 42 1 2.3687 2.9107 -3.6294 43 1 1.1322 3.1987 -5.8299 44 1 0.5859 2.0864 -7.9534 45 1 0.8020 -0.3498 -8.1668 46 1 2.5003 -2.2424 -9.3490 47 1 2.1402 -0.5680 -4.0777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453737284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:05 Heat of formation + Delta-G solvation = -36.375059 kcal Electronic energy + Delta-G solvation = -28284.709464 eV Core-core repulsion = 24432.560351 eV Total energy + Delta-G solvation = -3852.149112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16954 -40.51490 -39.37320 -38.78229 -37.33519 -36.04288 -34.77688 -31.90723 -31.76586 -30.40675 -29.41347 -27.27975 -26.47469 -25.98194 -24.43377 -23.82332 -22.87531 -22.11286 -20.69817 -20.24725 -19.56590 -18.72935 -18.04984 -17.37315 -17.15383 -16.91936 -16.49296 -16.41361 -16.20212 -15.91070 -15.49621 -15.12013 -14.77700 -14.65040 -14.54431 -14.06487 -14.00537 -13.65804 -13.57089 -13.29672 -13.14578 -13.03988 -12.94267 -12.84449 -12.76206 -12.41287 -12.29099 -12.18686 -12.05977 -11.82276 -11.62301 -11.47746 -11.30402 -11.15913 -11.09040 -10.84077 -10.37701 -9.79754 -9.38274 -8.81405 -8.56239 -6.39438 0.18695 0.94653 1.05159 1.32048 1.38348 1.50099 1.52336 2.13992 2.22388 2.43520 2.76641 3.26165 3.67658 3.69793 3.78743 3.81421 3.99419 4.10219 4.34571 4.37804 4.43077 4.43933 4.56655 4.59063 4.66245 4.80969 4.87302 4.87811 4.93511 4.97421 5.05959 5.07351 5.09850 5.10909 5.11953 5.13955 5.28169 5.33109 5.37569 5.46457 5.61863 5.66053 5.78118 5.97070 6.03764 6.09017 6.29034 6.32275 6.65081 6.73519 6.91282 6.97029 7.03709 8.38453 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.002852 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.943217 B = 9815.798095 C =10390.306168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.572 5.572 4 C 0.121 3.879 5 C -0.128 4.128 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.117 4.117 9 C 0.513 3.487 10 O -0.533 6.533 11 C 0.488 3.512 12 O -0.508 6.508 13 N -0.634 5.634 14 C 0.150 3.850 15 C -0.243 4.243 16 C -0.093 4.093 17 C -0.185 4.185 18 C 0.090 3.910 19 C -0.499 4.499 20 H 0.068 0.932 21 C 0.034 3.966 22 N -0.832 5.832 23 Si 0.984 3.016 24 H -0.261 1.261 25 H -0.266 1.266 26 H -0.262 1.262 27 C -0.222 4.222 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.421 0.579 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.287 0.713 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 6.027 19.821 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.305 5.305 4 C 0.001 3.999 5 C -0.147 4.147 6 C -0.175 4.175 7 C -0.179 4.179 8 C -0.155 4.155 9 C 0.295 3.705 10 O -0.411 6.411 11 C 0.271 3.729 12 O -0.383 6.383 13 N -0.281 5.281 14 C 0.057 3.943 15 C -0.264 4.264 16 C -0.112 4.112 17 C -0.205 4.205 18 C 0.088 3.912 19 C -0.529 4.529 20 H 0.086 0.914 21 C -0.180 4.180 22 N -0.459 5.459 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.186 1.186 27 C -0.243 4.243 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.259 0.741 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.619 5.845 19.666 20.580 hybrid contribution 0.256 -0.416 -0.773 0.915 sum 1.876 5.428 18.893 19.747 Atomic orbital electron populations 1.22027 0.95051 1.02800 1.01304 1.21992 0.95483 0.80355 1.04305 1.47956 1.62089 1.15089 1.05321 1.21887 0.96084 0.98522 0.83448 1.22979 0.93971 0.99630 0.98169 1.22965 0.98255 0.99539 0.96767 1.22878 0.97115 1.02090 0.95791 1.22813 0.96458 1.01194 0.95012 1.19789 0.79942 0.85720 0.85036 1.90712 1.43668 1.19915 1.86777 1.20606 0.80767 0.85837 0.85702 1.90768 1.38936 1.21648 1.86913 1.43092 1.60525 1.20970 1.03480 1.17503 0.99919 0.91777 0.85067 1.20513 1.13161 0.99117 0.93589 1.20842 0.99221 0.94307 0.96784 1.21399 1.05556 0.93689 0.99869 1.17817 0.88207 0.94122 0.91091 1.19735 1.44698 0.92418 0.96061 0.91384 1.26690 0.91508 1.05377 0.94395 1.69833 1.33477 1.39370 1.03251 0.85179 0.79242 0.76114 0.78998 1.18540 1.19061 1.18624 1.20975 1.11468 0.92794 0.99105 0.94574 0.90937 0.91308 0.90591 0.87466 0.86976 0.90218 0.89234 0.94215 0.90627 0.90927 0.90094 0.88988 0.89888 0.74065 0.85411 0.85791 0.87548 0.90227 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.67 71.98 0.70 -2.78 16 2 C 0.10 2.25 5.68 86.38 0.49 2.74 16 3 N -0.57 -13.51 2.48 -823.49 -2.04 -15.55 16 4 C 0.12 2.08 5.19 86.38 0.45 2.53 16 5 C -0.13 -2.10 3.96 -10.27 -0.04 -2.14 16 6 C -0.14 -2.78 6.81 31.21 0.21 -2.57 16 7 C -0.14 -2.07 8.09 31.21 0.25 -1.82 16 8 C -0.12 -1.37 7.64 31.12 0.24 -1.14 16 9 C 0.51 15.59 7.70 87.24 0.67 16.26 16 10 O -0.53 -17.00 14.89 -3.28 -0.05 -17.05 16 11 C 0.49 17.79 7.37 87.24 0.64 18.44 16 12 O -0.51 -20.57 9.19 -3.31 -0.03 -20.60 16 13 N -0.63 -23.78 5.32 -304.97 -1.62 -25.40 16 14 C 0.15 6.77 6.25 38.16 0.24 7.01 16 15 C -0.24 -10.35 9.97 22.59 0.23 -10.13 16 16 C -0.09 -4.22 10.01 22.20 0.22 -4.00 16 17 C -0.19 -9.84 8.65 22.75 0.20 -9.64 16 18 C 0.09 5.06 5.54 -21.31 -0.12 4.94 16 19 C -0.50 -28.04 9.06 23.46 0.21 -27.82 16 20 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 21 C 0.03 1.75 5.27 85.25 0.45 2.20 16 22 N -0.83 -44.18 10.85 21.82 0.24 -43.94 16 23 Si 0.98 39.40 29.57 68.60 2.03 41.43 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 C -0.22 -11.56 8.39 22.86 0.19 -11.37 16 28 H 0.04 1.06 6.48 -2.38 -0.02 1.04 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 2.22 5.82 -2.39 -0.01 2.20 16 32 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 33 H 0.11 1.27 8.07 -2.39 -0.02 1.25 16 34 H 0.08 1.52 7.23 -2.39 -0.02 1.50 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.72 7.55 -2.39 -0.02 1.70 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.42 13.60 8.30 -92.72 -0.77 12.83 16 43 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 44 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 45 H 0.11 5.88 6.27 -2.91 -0.02 5.86 16 46 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 47 H 0.09 4.95 6.50 -2.91 -0.02 4.93 16 Total: -1.00 -64.86 380.51 3.97 -60.89 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.22 Total: 39.54 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 5.23 Total: -19.30 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.43 Total: -84.90 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.08 Total: -37.65 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -64.86 3.97 -60.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453737284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.514 kcal (2) G-P(sol) polarization free energy of solvation -64.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds