Wall clock time and date at job start Tue Mar 31 2020 15:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46867 * 2 1 4 4 C 1.53004 * 109.46919 * 119.99879 * 2 1 3 5 5 C 1.50698 * 109.46777 * 185.00071 * 4 2 1 6 6 O 1.21289 * 120.00023 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99651 * 180.02562 * 5 4 2 8 8 C 1.39941 * 119.99575 * 184.51922 * 7 5 4 9 9 C 1.39297 * 119.94289 * 144.37944 * 8 7 5 10 10 C 1.38485 * 120.42786 * 180.02562 * 9 8 7 11 11 C 1.37684 * 120.32080 * 359.97438 * 10 9 8 12 12 C 1.40732 * 119.88883 * 0.02562 * 11 10 9 13 13 C 1.41405 * 120.21131 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99920 * 155.38116 * 13 12 11 15 15 C 1.39927 * 120.00337 * 335.38342 * 13 12 11 16 16 N 1.30837 * 119.99736 * 344.59531 * 15 13 12 17 17 Si 1.86797 * 120.00315 * 164.59278 * 15 13 12 18 18 H 1.48504 * 109.47015 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47440 * 120.00097 * 17 15 13 20 20 H 1.48504 * 109.47058 * 240.00047 * 17 15 13 21 21 C 1.38237 * 119.95412 * 324.10705 * 8 7 5 22 22 N 1.46502 * 109.47106 * 239.99792 * 2 1 3 23 23 C 1.45751 * 117.94279 * 119.73714 * 22 2 1 24 24 C 1.53108 * 110.38448 * 160.74590 * 23 22 2 25 25 C 1.53349 * 108.52791 * 51.11443 * 24 23 22 26 26 C 1.53065 * 108.42339 * 292.30968 * 25 24 23 27 27 C 1.33345 * 117.94581 * 300.00067 * 22 2 1 28 28 O 1.21280 * 118.25045 * 2.24502 * 27 22 2 29 29 H 1.08999 * 109.46956 * 300.00235 * 1 2 3 30 30 H 1.08996 * 109.46615 * 60.00298 * 1 2 3 31 31 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47065 * 65.00496 * 4 2 1 33 33 H 1.08998 * 109.47346 * 305.00274 * 4 2 1 34 34 H 0.96998 * 120.00149 * 4.53032 * 7 5 4 35 35 H 1.08003 * 119.78587 * 0.02585 * 9 8 7 36 36 H 1.08002 * 119.83865 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.05470 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99665 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.15687 * 0.02562 * 21 8 7 40 40 H 1.09006 * 109.30288 * 281.23866 * 23 22 2 41 41 H 1.09000 * 109.30277 * 40.61247 * 23 22 2 42 42 H 1.08996 * 109.80173 * 291.32527 * 24 23 22 43 43 H 1.09000 * 109.54465 * 170.74609 * 24 23 22 44 44 H 1.08990 * 109.67183 * 172.57671 * 25 24 23 45 45 H 1.09000 * 109.66904 * 52.04336 * 25 24 23 46 46 H 1.09003 * 109.40381 * 288.77298 * 26 25 24 47 47 H 1.09005 * 109.33042 * 168.98403 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 8 4.1451 -0.0211 0.4440 7 7 4.2149 -1.1805 2.3344 8 6 5.5985 -1.0019 2.4447 9 6 6.1863 -0.8846 3.7022 10 6 7.5544 -0.7071 3.8230 11 6 8.3492 -0.6452 2.7004 12 6 7.7694 -0.7622 1.4234 13 6 8.5791 -0.6990 0.2659 14 1 8.2485 -1.1651 -0.6505 15 6 9.8088 -0.0326 0.3077 16 7 10.0798 0.7789 1.2976 17 14 11.0637 -0.3017 -1.0496 18 1 10.5182 -1.2589 -2.0454 19 1 11.3567 0.9923 -1.7166 20 1 12.3135 -0.8521 -0.4662 21 6 6.3805 -0.9479 1.3061 22 7 2.0184 -0.6907 -1.1962 23 6 2.8482 0.0620 -2.1285 24 6 3.6414 -0.8916 -3.0261 25 6 2.6685 -1.9062 -3.6390 26 6 2.1402 -2.8068 -2.5197 27 6 1.6714 -1.9669 -1.3663 28 8 0.9377 -2.4765 -0.5461 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2618 2.1370 34 1 3.7403 -1.7114 2.9929 35 1 5.5711 -0.9323 4.5885 36 1 8.0002 -0.6176 4.8027 37 1 9.4156 -0.5062 2.7997 38 1 10.9321 1.2411 1.3264 39 1 5.9262 -1.0428 0.3309 40 1 2.2122 0.6974 -2.7449 41 1 3.5427 0.6880 -1.5682 42 1 4.3925 -1.4158 -2.4354 43 1 4.1273 -0.3251 -3.8205 44 1 3.1887 -2.5109 -4.3818 45 1 1.8379 -1.3801 -4.1096 46 1 2.9361 -3.4715 -2.1836 47 1 1.3077 -3.4007 -2.8970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456760505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:11 Heat of formation + Delta-G solvation = -56.019170 kcal Electronic energy + Delta-G solvation = -29150.588896 eV Core-core repulsion = 25297.587951 eV Total energy + Delta-G solvation = -3853.000945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.88224 -39.37084 -37.18853 -36.34819 -35.26703 -34.32679 -32.99798 -31.36112 -29.80344 -29.46712 -28.89675 -27.05354 -25.28092 -24.45507 -23.33657 -21.90462 -20.98482 -20.63700 -19.54122 -18.34663 -17.69116 -16.92023 -16.63942 -15.79003 -15.71148 -15.43990 -15.01683 -14.92387 -14.55688 -14.26849 -14.00450 -13.87574 -13.76112 -13.21249 -13.13508 -12.93106 -12.82704 -12.33179 -12.20125 -11.97312 -11.77616 -11.62782 -11.59360 -11.36377 -11.25384 -11.11212 -10.97809 -10.92558 -10.79927 -10.62901 -10.47698 -10.10083 -9.70775 -9.39759 -9.31132 -9.05963 -8.75906 -8.57491 -7.42704 -6.87976 -6.69746 -4.32875 2.66520 2.71893 2.85649 3.08247 3.08869 3.14408 3.19863 3.40746 3.72492 3.96410 4.54418 4.65838 4.74949 4.75839 4.80664 4.89260 5.02856 5.24700 5.37222 5.38936 5.48755 5.54124 5.61110 5.65300 5.74010 5.75769 5.79263 5.79658 5.88774 5.99812 6.08232 6.23290 6.26762 6.29246 6.42470 6.65174 6.84387 7.05245 7.09101 7.11012 7.28357 7.60124 7.62719 7.76604 8.01013 8.10996 8.23188 8.26010 8.30542 8.66223 8.80646 8.96090 9.01220 10.23502 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.003918 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.827305 B = 7144.138103 C = 8714.860088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.160 3.840 3 H 0.092 0.908 4 C -0.163 4.163 5 C 0.505 3.495 6 O -0.516 6.516 7 N -0.671 5.671 8 C 0.150 3.850 9 C -0.262 4.262 10 C -0.094 4.094 11 C -0.174 4.174 12 C 0.116 3.884 13 C -0.455 4.455 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.796 5.796 17 Si 0.908 3.092 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.272 1.272 21 C -0.208 4.208 22 N -0.581 5.581 23 C 0.113 3.887 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.135 4.135 27 C 0.517 3.483 28 O -0.562 6.562 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.278 0.722 39 H 0.110 0.890 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.187 -2.086 -5.750 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.056 3.944 3 H 0.110 0.890 4 C -0.203 4.203 5 C 0.292 3.708 6 O -0.391 6.391 7 N -0.315 5.315 8 C 0.058 3.942 9 C -0.284 4.284 10 C -0.113 4.113 11 C -0.194 4.194 12 C 0.113 3.887 13 C -0.485 4.485 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.422 5.422 17 Si 0.732 3.268 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.198 1.198 21 C -0.229 4.229 22 N -0.312 5.312 23 C -0.010 4.010 24 C -0.173 4.173 25 C -0.160 4.160 26 C -0.175 4.175 27 C 0.306 3.694 28 O -0.443 6.443 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.231 0.769 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.967 -1.722 -5.926 15.269 hybrid contribution 0.510 -0.152 -0.083 0.538 sum -13.457 -1.874 -6.009 14.857 Atomic orbital electron populations 1.22241 0.94457 1.04498 1.01554 1.20781 0.93970 0.96256 0.83370 0.88953 1.22207 0.92658 1.05790 0.99689 1.20636 0.89580 0.78769 0.81814 1.90660 1.69837 1.41625 1.37028 1.43489 1.07718 1.51899 1.28359 1.17473 0.80333 1.01879 0.94529 1.20071 0.95295 1.19193 0.93805 1.20469 0.92995 1.00544 0.97249 1.21404 0.99783 1.06665 0.91502 1.17527 0.90326 0.87670 0.93140 1.19560 1.01156 1.30325 0.97450 0.90582 1.25891 0.98698 0.92954 0.96677 1.69839 1.22884 1.19334 1.30099 0.86275 0.80191 0.79097 0.81222 1.18451 1.20023 1.19768 1.21030 0.92975 1.12877 0.96033 1.47228 1.49897 1.11044 1.23037 1.21556 0.93637 0.94408 0.91374 1.21888 0.98258 0.97781 0.99379 1.21663 0.99363 0.97673 0.97330 1.21661 1.03007 0.98448 0.94388 1.20074 0.80156 0.81833 0.87324 1.90574 1.37723 1.70967 1.45004 0.91948 0.92771 0.89625 0.86700 0.88539 0.76943 0.89450 0.89166 0.86120 0.91062 0.87241 0.92615 0.88330 0.90319 0.89988 0.90821 0.91502 0.88432 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.08 37.16 0.34 -1.52 16 2 C 0.16 2.05 2.20 -67.92 -0.15 1.90 16 3 H 0.09 1.19 7.60 -51.93 -0.39 0.79 16 4 C -0.16 -2.20 5.01 -27.88 -0.14 -2.34 16 5 C 0.51 8.92 7.53 -10.99 -0.08 8.83 16 6 O -0.52 -10.63 10.74 5.55 0.06 -10.58 16 7 N -0.67 -12.21 5.33 -9.91 -0.05 -12.27 16 8 C 0.15 3.40 6.28 -83.76 -0.53 2.88 16 9 C -0.26 -5.86 9.97 -39.10 -0.39 -6.25 16 10 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 11 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 12 C 0.12 3.18 5.58 -106.85 -0.60 2.58 16 13 C -0.46 -12.33 9.06 -37.75 -0.34 -12.67 16 14 H 0.08 2.00 7.89 -52.49 -0.41 1.59 16 15 C 0.07 1.90 5.19 -17.34 -0.09 1.81 16 16 N -0.80 -20.85 10.82 55.55 0.60 -20.25 16 17 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.21 -5.32 8.43 -38.68 -0.33 -5.65 16 22 N -0.58 -7.67 2.23 -167.25 -0.37 -8.05 16 23 C 0.11 1.38 5.74 -4.39 -0.03 1.36 16 24 C -0.14 -1.53 6.03 -26.49 -0.16 -1.69 16 25 C -0.12 -1.15 6.03 -26.52 -0.16 -1.31 16 26 C -0.14 -1.49 6.03 -28.10 -0.17 -1.66 16 27 C 0.52 7.13 6.86 -11.87 -0.08 7.05 16 28 O -0.56 -8.89 12.46 5.56 0.07 -8.82 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.09 5.84 -51.93 -0.30 0.79 16 32 H 0.12 1.65 5.90 -51.93 -0.31 1.35 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.40 5.84 8.82 -40.82 -0.36 5.48 16 35 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.12 3.27 6.07 -52.48 -0.32 2.95 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.11 2.86 6.27 -52.49 -0.33 2.53 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.46 6.28 -51.93 -0.33 1.13 16 42 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -31.06 370.69 -9.73 -40.80 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -6.96 Total: 13.92 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -3.64 Total: -14.20 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.18 Total: -40.56 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.13 Total: -19.39 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.06 -9.73 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456760505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.223 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds