Wall clock time and date at job start Tue Mar 31 2020 15:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46867 * 2 1 4 4 C 1.53004 * 109.46919 * 119.99879 * 2 1 3 5 5 C 1.50698 * 109.46777 * 185.00071 * 4 2 1 6 6 O 1.21289 * 120.00023 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99651 * 180.02562 * 5 4 2 8 8 C 1.39941 * 119.99575 * 184.51922 * 7 5 4 9 9 C 1.39297 * 119.94289 * 144.37944 * 8 7 5 10 10 C 1.38485 * 120.42786 * 180.02562 * 9 8 7 11 11 C 1.37684 * 120.32080 * 359.97438 * 10 9 8 12 12 C 1.40732 * 119.88883 * 0.02562 * 11 10 9 13 13 C 1.41405 * 120.21131 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99920 * 155.38116 * 13 12 11 15 15 C 1.39927 * 120.00337 * 335.38342 * 13 12 11 16 16 N 1.30837 * 119.99736 * 344.59531 * 15 13 12 17 17 Si 1.86797 * 120.00315 * 164.59278 * 15 13 12 18 18 H 1.48504 * 109.47015 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47440 * 120.00097 * 17 15 13 20 20 H 1.48504 * 109.47058 * 240.00047 * 17 15 13 21 21 C 1.38237 * 119.95412 * 324.10705 * 8 7 5 22 22 N 1.46502 * 109.47106 * 239.99792 * 2 1 3 23 23 C 1.45751 * 117.94279 * 119.73714 * 22 2 1 24 24 C 1.53108 * 110.38448 * 160.74590 * 23 22 2 25 25 C 1.53349 * 108.52791 * 51.11443 * 24 23 22 26 26 C 1.53065 * 108.42339 * 292.30968 * 25 24 23 27 27 C 1.33345 * 117.94581 * 300.00067 * 22 2 1 28 28 O 1.21280 * 118.25045 * 2.24502 * 27 22 2 29 29 H 1.08999 * 109.46956 * 300.00235 * 1 2 3 30 30 H 1.08996 * 109.46615 * 60.00298 * 1 2 3 31 31 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47065 * 65.00496 * 4 2 1 33 33 H 1.08998 * 109.47346 * 305.00274 * 4 2 1 34 34 H 0.96998 * 120.00149 * 4.53032 * 7 5 4 35 35 H 1.08003 * 119.78587 * 0.02585 * 9 8 7 36 36 H 1.08002 * 119.83865 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.05470 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99665 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.15687 * 0.02562 * 21 8 7 40 40 H 1.09006 * 109.30288 * 281.23866 * 23 22 2 41 41 H 1.09000 * 109.30277 * 40.61247 * 23 22 2 42 42 H 1.08996 * 109.80173 * 291.32527 * 24 23 22 43 43 H 1.09000 * 109.54465 * 170.74609 * 24 23 22 44 44 H 1.08990 * 109.67183 * 172.57671 * 25 24 23 45 45 H 1.09000 * 109.66904 * 52.04336 * 25 24 23 46 46 H 1.09003 * 109.40381 * 288.77298 * 26 25 24 47 47 H 1.09005 * 109.33042 * 168.98403 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 8 4.1451 -0.0211 0.4440 7 7 4.2149 -1.1805 2.3344 8 6 5.5985 -1.0019 2.4447 9 6 6.1863 -0.8846 3.7022 10 6 7.5544 -0.7071 3.8230 11 6 8.3492 -0.6452 2.7004 12 6 7.7694 -0.7622 1.4234 13 6 8.5791 -0.6990 0.2659 14 1 8.2485 -1.1651 -0.6505 15 6 9.8088 -0.0326 0.3077 16 7 10.0798 0.7789 1.2976 17 14 11.0637 -0.3017 -1.0496 18 1 10.5182 -1.2589 -2.0454 19 1 11.3567 0.9923 -1.7166 20 1 12.3135 -0.8521 -0.4662 21 6 6.3805 -0.9479 1.3061 22 7 2.0184 -0.6907 -1.1962 23 6 2.8482 0.0620 -2.1285 24 6 3.6414 -0.8916 -3.0261 25 6 2.6685 -1.9062 -3.6390 26 6 2.1402 -2.8068 -2.5197 27 6 1.6714 -1.9669 -1.3663 28 8 0.9377 -2.4765 -0.5461 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2618 2.1370 34 1 3.7403 -1.7114 2.9929 35 1 5.5711 -0.9323 4.5885 36 1 8.0002 -0.6176 4.8027 37 1 9.4156 -0.5062 2.7997 38 1 10.9321 1.2411 1.3264 39 1 5.9262 -1.0428 0.3309 40 1 2.2122 0.6974 -2.7449 41 1 3.5427 0.6880 -1.5682 42 1 4.3925 -1.4158 -2.4354 43 1 4.1273 -0.3251 -3.8205 44 1 3.1887 -2.5109 -4.3818 45 1 1.8379 -1.3801 -4.1096 46 1 2.9361 -3.4715 -2.1836 47 1 1.3077 -3.4007 -2.8970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456760505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:10 Heat of formation + Delta-G solvation = -73.395859 kcal Electronic energy + Delta-G solvation = -29151.342406 eV Core-core repulsion = 25297.587951 eV Total energy + Delta-G solvation = -3853.754455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.99890 -40.85738 -38.95395 -37.38731 -36.42105 -35.96932 -34.79243 -32.39645 -31.74808 -30.52883 -30.31568 -28.43616 -27.24097 -25.38203 -24.38667 -23.39191 -22.73721 -21.99164 -21.08730 -19.54368 -19.29509 -18.16681 -17.90657 -17.36408 -17.04778 -16.69863 -16.53060 -16.45496 -16.18192 -15.39471 -15.14191 -15.10576 -14.90774 -14.67474 -14.62099 -14.16846 -14.02817 -13.99624 -13.58016 -13.15535 -13.14021 -12.99699 -12.83785 -12.79162 -12.57707 -12.53959 -12.37192 -12.21177 -11.98144 -11.85247 -11.80767 -11.71488 -11.55174 -11.20647 -10.79622 -10.46050 -10.35067 -9.61853 -9.38488 -8.72227 -8.60934 -6.36499 0.89221 1.01462 1.36281 1.47473 1.51816 1.65548 1.83380 2.09783 2.19972 2.29822 2.73887 3.57226 3.70957 3.77675 3.85496 3.89033 3.91727 3.97058 4.23991 4.38091 4.47085 4.49857 4.52635 4.57330 4.63512 4.70115 4.77525 4.80935 4.92424 4.93152 4.96552 5.02461 5.07549 5.12151 5.14008 5.18716 5.27905 5.33496 5.34907 5.36195 5.65254 5.77686 5.88695 6.08524 6.13182 6.35641 6.60126 6.66843 6.70366 6.94695 7.02129 7.20717 7.37810 8.34486 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.003918 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.827305 B = 7144.138103 C = 8714.860088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.090 0.910 4 C -0.148 4.148 5 C 0.499 3.501 6 O -0.547 6.547 7 N -0.665 5.665 8 C 0.156 3.844 9 C -0.255 4.255 10 C -0.094 4.094 11 C -0.201 4.201 12 C 0.087 3.913 13 C -0.495 4.495 14 H 0.066 0.934 15 C 0.035 3.965 16 N -0.826 5.826 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.230 4.230 22 N -0.584 5.584 23 C 0.114 3.886 24 C -0.134 4.134 25 C -0.111 4.111 26 C -0.135 4.135 27 C 0.507 3.493 28 O -0.585 6.585 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.417 0.583 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.288 0.712 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.633 -2.052 -5.855 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.108 0.892 4 C -0.188 4.188 5 C 0.288 3.712 6 O -0.424 6.424 7 N -0.310 5.310 8 C 0.063 3.937 9 C -0.276 4.276 10 C -0.113 4.113 11 C -0.220 4.220 12 C 0.084 3.916 13 C -0.525 4.525 14 H 0.084 0.916 15 C -0.179 4.179 16 N -0.452 5.452 17 Si 0.803 3.197 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.185 1.185 21 C -0.252 4.252 22 N -0.314 5.314 23 C -0.009 4.009 24 C -0.172 4.172 25 C -0.149 4.149 26 C -0.175 4.175 27 C 0.297 3.703 28 O -0.468 6.468 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.147 0.853 34 H 0.254 0.746 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.449 -1.692 -6.007 16.662 hybrid contribution 0.863 -0.136 0.045 0.875 sum -14.586 -1.828 -5.962 15.863 Atomic orbital electron populations 1.22126 0.92535 1.03802 1.03027 1.20941 0.95358 0.95907 0.82955 0.89227 1.22191 0.89011 1.05987 1.01650 1.21476 0.91287 0.77677 0.80755 1.90674 1.70912 1.42815 1.38048 1.43458 1.05983 1.52292 1.29305 1.17567 0.82328 0.99926 0.93919 1.20470 0.95206 1.17060 0.94844 1.20821 0.93620 0.99129 0.97681 1.21368 0.99510 1.08947 0.92225 1.17868 0.91286 0.88517 0.93897 1.19754 1.03083 1.32249 0.97405 0.91595 1.26734 0.99952 0.91913 0.99304 1.69884 1.23801 1.19749 1.31811 0.85162 0.77378 0.79261 0.77905 1.18421 1.18938 1.18462 1.20988 0.92944 1.14817 0.96452 1.47348 1.49582 1.11172 1.23290 1.21560 0.93560 0.94489 0.91282 1.21864 0.97966 0.98146 0.99242 1.21623 0.99356 0.97031 0.96885 1.21707 1.03365 0.98378 0.94050 1.20572 0.79881 0.81997 0.87861 1.90555 1.38881 1.71375 1.46015 0.89859 0.91967 0.91234 0.87083 0.85284 0.74634 0.85552 0.86268 0.87627 0.90165 0.89030 0.89919 0.91431 0.93910 0.88503 0.89065 0.89703 0.89228 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.08 71.99 0.65 -2.45 16 2 C 0.15 3.73 2.20 45.00 0.10 3.82 16 3 H 0.09 2.24 7.60 -2.39 -0.02 2.22 16 4 C -0.15 -3.79 5.01 29.85 0.15 -3.64 16 5 C 0.50 17.53 7.53 87.66 0.66 18.19 16 6 O -0.55 -23.33 10.74 -3.06 -0.03 -23.36 16 7 N -0.66 -23.59 5.33 -303.64 -1.62 -25.21 16 8 C 0.16 7.08 6.28 38.10 0.24 7.32 16 9 C -0.25 -10.95 9.97 22.58 0.23 -10.73 16 10 C -0.09 -4.37 10.02 22.20 0.22 -4.15 16 11 C -0.20 -10.90 8.69 22.75 0.20 -10.70 16 12 C 0.09 4.99 5.58 -21.31 -0.12 4.87 16 13 C -0.50 -28.32 9.06 23.46 0.21 -28.11 16 14 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 15 C 0.04 1.84 5.19 85.25 0.44 2.29 16 16 N -0.83 -44.56 10.82 21.82 0.24 -44.33 16 17 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 C -0.23 -12.32 8.43 22.85 0.19 -12.13 16 22 N -0.58 -15.19 2.23 -802.24 -1.79 -16.98 16 23 C 0.11 2.80 5.74 86.56 0.50 3.29 16 24 C -0.13 -3.07 6.03 30.75 0.19 -2.89 16 25 C -0.11 -1.92 6.03 30.73 0.19 -1.74 16 26 C -0.14 -2.87 6.03 29.71 0.18 -2.69 16 27 C 0.51 13.72 6.86 87.72 0.60 14.33 16 28 O -0.59 -18.14 12.46 -3.03 -0.04 -18.18 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.65 5.84 -2.39 -0.01 1.64 16 32 H 0.11 3.05 5.90 -2.39 -0.01 3.04 16 33 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.42 11.37 8.82 -92.71 -0.82 10.55 16 35 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 36 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.11 5.96 6.07 -2.91 -0.02 5.95 16 38 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 39 H 0.09 5.12 6.27 -2.91 -0.02 5.11 16 40 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.07 2.11 6.28 -2.39 -0.01 2.09 16 42 H 0.04 1.28 8.12 -2.39 -0.02 1.26 16 43 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 1.20 8.12 -2.39 -0.02 1.19 16 46 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -71.13 370.69 3.78 -67.35 By element: Atomic # 1 Polarization: 44.08 SS G_CDS: 0.17 Total: 44.26 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.82 Total: -25.12 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.17 Total: -86.52 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.07 Total: -41.54 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -71.13 3.78 -67.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456760505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.047 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds