Wall clock time and date at job start Tue Mar 31 2020 16:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46753 * 2 1 4 4 C 1.36829 * 125.06008 * 265.01945 * 3 2 1 5 5 C 1.34242 * 109.93133 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.50313 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47044 * 265.02965 * 6 5 4 8 8 O 1.21297 * 120.00184 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00064 * 179.72591 * 7 6 5 10 10 C 1.37107 * 119.99938 * 0.27341 * 9 7 6 11 11 H 1.08000 * 119.99613 * 325.65403 * 10 9 7 12 12 C 1.38946 * 119.99820 * 145.64987 * 10 9 7 13 13 N 1.31411 * 120.00340 * 338.15655 * 12 10 9 14 14 Si 1.86800 * 119.99494 * 158.16210 * 12 10 9 15 15 H 1.48501 * 109.47595 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47201 * 119.99936 * 14 12 10 17 17 H 1.48507 * 109.46920 * 239.99505 * 14 12 10 18 18 C 1.46500 * 120.00654 * 180.27341 * 9 7 6 19 19 C 1.52998 * 109.47312 * 84.55055 * 18 9 7 20 20 O 1.42895 * 109.47015 * 65.00049 * 19 18 9 21 21 C 1.42904 * 114.00106 * 180.02562 * 20 19 18 22 22 C 1.46488 * 106.99212 * 0.23271 * 5 4 3 23 23 C 1.39635 * 134.02945 * 179.73597 * 22 5 4 24 24 C 1.36622 * 119.76347 * 180.02562 * 23 22 5 25 25 C 1.38837 * 120.52962 * 359.97320 * 24 23 22 26 26 C 1.37753 * 120.66213 * 359.67056 * 25 24 23 27 27 C 1.37685 * 125.06582 * 84.99695 * 3 2 1 28 28 H 1.09006 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47485 * 300.00149 * 1 2 3 30 30 H 1.08998 * 109.47299 * 60.00797 * 1 2 3 31 31 H 1.09002 * 109.47485 * 239.99851 * 2 1 3 32 32 H 1.08998 * 109.47299 * 119.99203 * 2 1 3 33 33 H 1.07997 * 125.03693 * 359.94609 * 4 3 2 34 34 H 1.08997 * 109.46609 * 145.02910 * 6 5 4 35 35 H 1.08998 * 109.47157 * 25.02799 * 6 5 4 36 36 H 0.96995 * 119.99825 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.47646 * 204.55341 * 18 9 7 38 38 H 1.09006 * 109.46610 * 324.55601 * 18 9 7 39 39 H 1.08995 * 109.47335 * 185.00715 * 19 18 9 40 40 H 1.09004 * 109.46762 * 305.00739 * 19 18 9 41 41 H 1.09001 * 109.47220 * 180.02562 * 21 20 19 42 42 H 1.09008 * 109.46940 * 300.00412 * 21 20 19 43 43 H 1.09000 * 109.47532 * 59.99819 * 21 20 19 44 44 H 1.07996 * 120.11538 * 0.05915 * 23 22 5 45 45 H 1.07996 * 119.73834 * 179.97438 * 24 23 22 46 46 H 1.07993 * 119.66738 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.10554 * 179.87950 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3718 2.0899 -1.1158 5 6 2.7745 3.3221 -0.7668 6 6 3.2452 4.4089 -1.6987 7 6 4.7491 4.3764 -1.7893 8 8 5.3770 3.5521 -1.1587 9 7 5.3961 5.2600 -2.5747 10 6 4.6864 6.1921 -3.2870 11 1 3.7141 5.9418 -3.6851 12 6 5.2180 7.4586 -3.4966 13 7 6.1527 7.9196 -2.6962 14 14 4.6038 8.5060 -4.9162 15 1 3.5573 7.7630 -5.6631 16 1 4.0318 9.7702 -4.3873 17 1 5.7347 8.8174 -5.8270 18 6 6.8577 5.2247 -2.6676 19 6 7.2774 4.1930 -3.7165 20 8 6.8268 4.6140 -5.0056 21 6 7.1684 3.7153 -6.0628 22 6 2.6755 3.4076 0.6922 23 6 2.9499 4.4083 1.6266 24 6 2.7469 4.1689 2.9562 25 6 2.2693 2.9382 3.3864 26 6 1.9852 1.9396 2.4811 27 6 2.1892 2.1598 1.1226 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.3332 1.7137 -2.1273 34 1 2.9250 5.3784 -1.3171 35 1 2.8180 4.2489 -2.6886 36 1 6.5235 8.8039 -2.8423 37 1 7.2273 6.2083 -2.9572 38 1 7.2766 4.9496 -1.6995 39 1 8.3635 4.1025 -3.7229 40 1 6.8337 3.2273 -3.4741 41 1 6.7915 4.1063 -7.0080 42 1 8.2524 3.6145 -6.1180 43 1 6.7223 2.7399 -5.8690 44 1 3.3207 5.3684 1.2992 45 1 2.9597 4.9430 3.6786 46 1 2.1135 2.7642 4.4407 47 1 1.6159 0.9850 2.8257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457180768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:42 Heat of formation + Delta-G solvation = -12.129521 kcal Electronic energy + Delta-G solvation = -28670.638712 eV Core-core repulsion = 24819.540965 eV Total energy + Delta-G solvation = -3851.097747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01731 -38.48713 -36.90244 -36.80194 -34.66640 -33.92710 -31.46299 -31.24549 -30.05134 -28.85353 -28.72841 -26.45131 -25.68538 -24.51844 -23.35546 -22.20525 -21.85303 -20.79340 -19.39213 -18.73784 -16.99998 -16.27549 -16.23272 -16.06535 -15.34420 -15.26265 -15.09304 -14.71226 -14.41871 -14.33520 -14.21281 -13.91422 -13.84744 -13.44252 -13.21445 -12.76269 -12.52302 -12.32085 -12.24200 -11.96718 -11.83271 -11.63327 -11.38944 -11.28831 -11.13219 -11.04596 -10.95755 -10.93647 -10.60244 -10.56481 -10.30646 -10.26349 -9.93484 -9.16746 -9.04234 -8.90233 -8.27993 -7.77205 -7.41107 -7.10696 -6.24514 -3.87771 1.52177 2.00711 3.05048 3.12261 3.22084 3.32902 3.36654 4.04626 4.24484 4.31447 4.56191 4.62812 4.91003 4.95110 4.97789 5.14191 5.18435 5.22460 5.27941 5.39152 5.46960 5.53880 5.69250 5.74574 5.77223 5.83314 5.91399 5.97950 6.00599 6.05574 6.14178 6.15401 6.24318 6.30148 6.43343 6.53040 6.54052 6.69369 6.85309 6.87552 7.02182 7.16858 7.28429 7.37671 7.57188 7.62616 7.69502 7.88446 8.08696 8.49544 9.23824 9.67327 10.08765 10.78343 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003616 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.167073 B = 7741.886120 C = 8492.622109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.487 5.487 4 C 0.042 3.958 5 C -0.121 4.121 6 C -0.049 4.049 7 C 0.471 3.529 8 O -0.601 6.601 9 N -0.434 5.434 10 C -0.320 4.320 11 H 0.087 0.913 12 C 0.047 3.953 13 N -0.864 5.864 14 Si 0.913 3.087 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.281 1.281 18 C 0.115 3.885 19 C 0.053 3.947 20 O -0.364 6.364 21 C 0.031 3.969 22 C -0.087 4.087 23 C -0.056 4.056 24 C -0.158 4.158 25 C -0.105 4.105 26 C -0.138 4.138 27 C 0.099 3.901 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.031 0.969 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 -11.212 3.164 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.172 5.172 4 C -0.080 4.080 5 C -0.128 4.128 6 C -0.090 4.090 7 C 0.260 3.740 8 O -0.487 6.487 9 N -0.152 5.152 10 C -0.448 4.448 11 H 0.105 0.895 12 C -0.158 4.158 13 N -0.502 5.502 14 Si 0.740 3.260 15 H -0.193 1.193 16 H -0.212 1.212 17 H -0.207 1.207 18 C -0.009 4.009 19 C -0.025 4.025 20 O -0.283 6.283 21 C -0.066 4.066 22 C -0.092 4.092 23 C -0.075 4.075 24 C -0.177 4.177 25 C -0.124 4.124 26 C -0.159 4.159 27 C -0.007 4.007 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.178 0.822 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.296 -11.594 3.402 14.115 hybrid contribution 0.050 0.220 -0.908 0.936 sum -7.245 -11.374 2.494 13.714 Atomic orbital electron populations 1.22196 0.95131 1.02348 1.03137 1.21611 0.94842 0.81035 1.03664 1.43777 1.57221 1.11516 1.04685 1.21408 1.04031 0.91849 0.90760 1.19969 1.05718 0.95373 0.91753 1.19745 0.94397 0.97077 0.97743 1.20352 0.89361 0.84024 0.80253 1.90529 1.68881 1.41379 1.47899 1.43358 1.04561 1.28755 1.38515 1.19328 1.03518 0.91233 1.30720 0.89488 1.25196 0.96874 0.96667 0.97024 1.69919 1.28346 1.17767 1.34148 0.86116 0.78779 0.79282 0.81827 1.19339 1.21198 1.20679 1.21433 0.83349 1.00857 0.95264 1.23047 0.96286 0.98855 0.84297 1.88133 1.78855 1.46060 1.15208 1.22638 0.98274 0.93879 0.91839 1.19061 1.03436 0.93532 0.93178 1.20361 0.96776 0.98268 0.92070 1.20533 1.04210 0.97495 0.95480 1.20675 1.00148 0.93320 0.98297 1.19857 1.06815 0.99781 0.89438 1.18191 1.02794 0.91381 0.88287 0.91261 0.92019 0.91903 0.89565 0.90143 0.82205 0.88868 0.89847 0.92329 0.86677 0.91503 0.94521 0.94176 0.90488 0.95241 0.95079 0.86066 0.86524 0.86475 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.15 0.38 -1.10 16 2 C 0.11 1.15 6.72 -4.04 -0.03 1.13 16 3 N -0.49 -7.34 2.78 -114.43 -0.32 -7.66 16 4 C 0.04 0.71 11.19 -16.73 -0.19 0.52 16 5 C -0.12 -2.35 4.81 -102.71 -0.49 -2.84 16 6 C -0.05 -1.02 4.89 -29.04 -0.14 -1.16 16 7 C 0.47 11.57 7.59 -10.99 -0.08 11.49 16 8 O -0.60 -16.12 15.71 5.54 0.09 -16.03 16 9 N -0.43 -10.98 2.51 -114.81 -0.29 -11.27 16 10 C -0.32 -8.16 8.48 -14.93 -0.13 -8.28 16 11 H 0.09 2.13 6.98 -52.49 -0.37 1.76 16 12 C 0.05 1.21 4.93 -17.47 -0.09 1.12 16 13 N -0.86 -23.05 11.34 55.50 0.63 -22.42 16 14 Si 0.91 20.13 29.61 -169.99 -5.03 15.10 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.12 2.81 5.29 -4.04 -0.02 2.79 16 19 C 0.05 1.13 6.24 37.16 0.23 1.36 16 20 O -0.36 -7.88 10.44 -35.23 -0.37 -8.24 16 21 C 0.03 0.50 11.01 101.05 1.11 1.61 16 22 C -0.09 -1.68 6.35 -105.14 -0.67 -2.34 16 23 C -0.06 -1.02 10.05 -39.64 -0.40 -1.42 16 24 C -0.16 -2.43 9.97 -39.94 -0.40 -2.83 16 25 C -0.11 -1.47 10.01 -39.54 -0.40 -1.86 16 26 C -0.14 -2.00 10.00 -39.43 -0.39 -2.40 16 27 C 0.10 1.67 6.81 -83.99 -0.57 1.10 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.09 1.94 8.10 -51.93 -0.42 1.51 16 35 H 0.08 1.58 7.64 -51.93 -0.40 1.18 16 36 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 37 H 0.12 3.01 5.37 -51.93 -0.28 2.73 16 38 H 0.07 1.66 7.59 -51.93 -0.39 1.27 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 47 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -32.10 393.95 -8.95 -41.06 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.33 Total: 6.65 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.27 Total: -3.12 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.02 Total: -41.35 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.28 Total: -24.28 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.10 -8.95 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.930 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds