Wall clock time and date at job start Tue Mar 31 2020 16:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46753 * 2 1 4 4 C 1.36829 * 125.06008 * 265.01945 * 3 2 1 5 5 C 1.34242 * 109.93133 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.50313 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47044 * 265.02965 * 6 5 4 8 8 O 1.21297 * 120.00184 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00064 * 179.72591 * 7 6 5 10 10 C 1.37107 * 119.99938 * 0.27341 * 9 7 6 11 11 H 1.08000 * 119.99613 * 325.65403 * 10 9 7 12 12 C 1.38946 * 119.99820 * 145.64987 * 10 9 7 13 13 N 1.31411 * 120.00340 * 338.15655 * 12 10 9 14 14 Si 1.86800 * 119.99494 * 158.16210 * 12 10 9 15 15 H 1.48501 * 109.47595 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47201 * 119.99936 * 14 12 10 17 17 H 1.48507 * 109.46920 * 239.99505 * 14 12 10 18 18 C 1.46500 * 120.00654 * 180.27341 * 9 7 6 19 19 C 1.52998 * 109.47312 * 84.55055 * 18 9 7 20 20 O 1.42895 * 109.47015 * 65.00049 * 19 18 9 21 21 C 1.42904 * 114.00106 * 180.02562 * 20 19 18 22 22 C 1.46488 * 106.99212 * 0.23271 * 5 4 3 23 23 C 1.39635 * 134.02945 * 179.73597 * 22 5 4 24 24 C 1.36622 * 119.76347 * 180.02562 * 23 22 5 25 25 C 1.38837 * 120.52962 * 359.97320 * 24 23 22 26 26 C 1.37753 * 120.66213 * 359.67056 * 25 24 23 27 27 C 1.37685 * 125.06582 * 84.99695 * 3 2 1 28 28 H 1.09006 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47485 * 300.00149 * 1 2 3 30 30 H 1.08998 * 109.47299 * 60.00797 * 1 2 3 31 31 H 1.09002 * 109.47485 * 239.99851 * 2 1 3 32 32 H 1.08998 * 109.47299 * 119.99203 * 2 1 3 33 33 H 1.07997 * 125.03693 * 359.94609 * 4 3 2 34 34 H 1.08997 * 109.46609 * 145.02910 * 6 5 4 35 35 H 1.08998 * 109.47157 * 25.02799 * 6 5 4 36 36 H 0.96995 * 119.99825 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.47646 * 204.55341 * 18 9 7 38 38 H 1.09006 * 109.46610 * 324.55601 * 18 9 7 39 39 H 1.08995 * 109.47335 * 185.00715 * 19 18 9 40 40 H 1.09004 * 109.46762 * 305.00739 * 19 18 9 41 41 H 1.09001 * 109.47220 * 180.02562 * 21 20 19 42 42 H 1.09008 * 109.46940 * 300.00412 * 21 20 19 43 43 H 1.09000 * 109.47532 * 59.99819 * 21 20 19 44 44 H 1.07996 * 120.11538 * 0.05915 * 23 22 5 45 45 H 1.07996 * 119.73834 * 179.97438 * 24 23 22 46 46 H 1.07993 * 119.66738 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.10554 * 179.87950 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3718 2.0899 -1.1158 5 6 2.7745 3.3221 -0.7668 6 6 3.2452 4.4089 -1.6987 7 6 4.7491 4.3764 -1.7893 8 8 5.3770 3.5521 -1.1587 9 7 5.3961 5.2600 -2.5747 10 6 4.6864 6.1921 -3.2870 11 1 3.7141 5.9418 -3.6851 12 6 5.2180 7.4586 -3.4966 13 7 6.1527 7.9196 -2.6962 14 14 4.6038 8.5060 -4.9162 15 1 3.5573 7.7630 -5.6631 16 1 4.0318 9.7702 -4.3873 17 1 5.7347 8.8174 -5.8270 18 6 6.8577 5.2247 -2.6676 19 6 7.2774 4.1930 -3.7165 20 8 6.8268 4.6140 -5.0056 21 6 7.1684 3.7153 -6.0628 22 6 2.6755 3.4076 0.6922 23 6 2.9499 4.4083 1.6266 24 6 2.7469 4.1689 2.9562 25 6 2.2693 2.9382 3.3864 26 6 1.9852 1.9396 2.4811 27 6 2.1892 2.1598 1.1226 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.3332 1.7137 -2.1273 34 1 2.9250 5.3784 -1.3171 35 1 2.8180 4.2489 -2.6886 36 1 6.5235 8.8039 -2.8423 37 1 7.2273 6.2083 -2.9572 38 1 7.2766 4.9496 -1.6995 39 1 8.3635 4.1025 -3.7229 40 1 6.8337 3.2273 -3.4741 41 1 6.7915 4.1063 -7.0080 42 1 8.2524 3.6145 -6.1180 43 1 6.7223 2.7399 -5.8690 44 1 3.3207 5.3684 1.2992 45 1 2.9597 4.9430 3.6786 46 1 2.1135 2.7642 4.4407 47 1 1.6159 0.9850 2.8257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:41 Heat of formation + Delta-G solvation = -29.141505 kcal Electronic energy + Delta-G solvation = -28671.376407 eV Core-core repulsion = 24819.540965 eV Total energy + Delta-G solvation = -3851.835442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.23924 -40.37042 -38.53027 -37.97023 -36.54035 -35.13200 -33.43971 -32.47178 -31.50476 -30.39181 -29.89165 -27.77684 -27.22190 -26.36325 -24.40481 -23.68651 -23.25117 -21.98821 -21.02768 -20.35057 -18.66786 -17.90115 -17.56741 -17.40933 -17.07822 -16.88520 -16.30084 -16.14551 -16.05400 -15.78712 -15.63210 -15.32306 -15.17923 -14.76026 -14.43379 -14.33806 -13.79433 -13.62505 -13.52278 -13.38181 -13.26380 -12.99228 -12.91878 -12.88250 -12.58140 -12.48021 -12.43062 -12.22569 -12.07130 -12.00370 -12.00199 -11.76672 -11.57398 -10.97391 -10.54437 -10.47440 -10.15793 -9.40056 -9.00041 -8.37822 -8.20370 -5.89646 0.28304 0.78450 1.45146 1.52041 1.63374 1.77860 1.98487 2.13565 2.40865 2.97725 3.03106 3.14188 3.31900 3.80195 3.83834 3.97182 4.14372 4.20533 4.25439 4.30683 4.32445 4.41271 4.42510 4.46902 4.53875 4.55284 4.64036 4.67975 4.71068 4.78805 4.82078 4.83346 4.87451 4.91864 4.97611 5.04125 5.09901 5.24556 5.35710 5.39840 5.58036 5.63801 5.77945 5.93110 5.96366 6.06976 6.37376 6.41776 6.51500 6.56191 7.25242 7.72350 8.13602 8.83123 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003616 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.167073 B = 7741.886120 C = 8492.622109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.482 5.482 4 C 0.057 3.943 5 C -0.169 4.169 6 C -0.034 4.034 7 C 0.461 3.539 8 O -0.629 6.629 9 N -0.443 5.443 10 C -0.331 4.331 11 H 0.094 0.906 12 C 0.007 3.993 13 N -0.897 5.897 14 Si 0.977 3.023 15 H -0.258 1.258 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.113 3.887 19 C 0.067 3.933 20 O -0.395 6.395 21 C 0.025 3.975 22 C -0.123 4.123 23 C -0.095 4.095 24 C -0.155 4.155 25 C -0.104 4.104 26 C -0.132 4.132 27 C 0.084 3.916 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.185 0.815 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.268 0.732 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.039 0.961 44 H 0.097 0.903 45 H 0.137 0.863 46 H 0.157 0.843 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 -13.448 2.933 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.166 5.166 4 C -0.068 4.068 5 C -0.177 4.177 6 C -0.074 4.074 7 C 0.252 3.748 8 O -0.517 6.517 9 N -0.161 5.161 10 C -0.458 4.458 11 H 0.112 0.888 12 C -0.195 4.195 13 N -0.535 5.535 14 Si 0.801 3.199 15 H -0.182 1.182 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.011 4.011 19 C -0.010 4.010 20 O -0.314 6.314 21 C -0.072 4.072 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.174 4.174 25 C -0.123 4.123 26 C -0.152 4.152 27 C -0.022 4.022 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.202 0.798 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.115 0.885 45 H 0.155 0.845 46 H 0.175 0.825 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.796 -13.858 3.171 16.718 hybrid contribution 0.526 0.838 -0.776 1.258 sum -8.270 -13.020 2.395 15.609 Atomic orbital electron populations 1.22138 0.93628 1.03932 1.02299 1.22016 0.96019 0.78548 1.05305 1.44089 1.56081 1.12817 1.03584 1.21738 1.01781 0.91055 0.92241 1.19969 1.09111 0.96497 0.92085 1.19537 0.91511 0.97413 0.98931 1.21042 0.91036 0.83324 0.79412 1.90479 1.69894 1.42471 1.48875 1.43582 1.04925 1.28908 1.38713 1.19596 1.03949 0.91537 1.30747 0.88841 1.25977 0.97049 0.97661 0.98827 1.70023 1.29678 1.18264 1.35580 0.85135 0.78300 0.77692 0.78725 1.18208 1.20853 1.20873 1.21356 0.83302 1.00904 0.95567 1.22765 0.97540 0.96796 0.83945 1.88062 1.79568 1.47956 1.15858 1.22895 0.99904 0.93545 0.90812 1.19368 1.04871 0.95164 0.93409 1.20408 0.99468 0.97782 0.93745 1.20849 1.03036 0.98982 0.94528 1.21132 0.98710 0.92181 1.00275 1.20310 1.05324 1.01256 0.88326 1.18496 1.03140 0.90878 0.89723 0.88403 0.92892 0.92708 0.87841 0.88667 0.79789 0.90241 0.88506 0.92218 0.88446 0.93304 0.91936 0.95148 0.88646 0.93166 0.94186 0.88504 0.84542 0.82524 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.24 71.98 0.74 -1.59 16 2 C 0.10 1.80 6.72 86.38 0.58 2.38 16 3 N -0.48 -13.82 2.78 -515.94 -1.43 -15.25 16 4 C 0.06 1.87 11.19 83.00 0.93 2.80 16 5 C -0.17 -6.80 4.81 -18.63 -0.09 -6.89 16 6 C -0.03 -1.46 4.89 29.10 0.14 -1.32 16 7 C 0.46 23.78 7.59 87.66 0.67 24.45 16 8 O -0.63 -35.39 15.71 -3.08 -0.05 -35.44 16 9 N -0.44 -23.37 2.51 -635.54 -1.60 -24.97 16 10 C -0.33 -17.28 8.48 84.04 0.71 -16.57 16 11 H 0.09 4.66 6.98 -2.91 -0.02 4.63 16 12 C 0.01 0.35 4.93 84.93 0.42 0.77 16 13 N -0.90 -49.40 11.34 21.66 0.25 -49.16 16 14 Si 0.98 41.58 29.61 68.60 2.03 43.61 16 15 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.11 5.76 5.29 86.38 0.46 6.21 16 19 C 0.07 2.91 6.24 71.98 0.45 3.35 16 20 O -0.40 -16.93 10.44 -148.98 -1.56 -18.48 16 21 C 0.02 0.75 11.01 113.37 1.25 2.00 16 22 C -0.12 -4.92 6.35 -20.20 -0.13 -5.05 16 23 C -0.10 -3.68 10.05 22.23 0.22 -3.46 16 24 C -0.15 -4.75 9.97 22.04 0.22 -4.53 16 25 C -0.10 -2.65 10.01 22.30 0.22 -2.43 16 26 C -0.13 -3.49 10.00 22.37 0.22 -3.27 16 27 C 0.08 2.76 6.81 39.03 0.27 3.03 16 28 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.51 8.12 -2.39 -0.02 1.49 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.19 4.90 8.06 -2.91 -0.02 4.87 16 34 H 0.08 3.58 8.10 -2.39 -0.02 3.56 16 35 H 0.10 3.80 7.64 -2.39 -0.02 3.78 16 36 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 37 H 0.10 5.33 5.37 -2.39 -0.01 5.31 16 38 H 0.05 2.58 7.59 -2.38 -0.02 2.57 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 4.01 8.06 -2.91 -0.02 3.98 16 45 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 47 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.03 393.95 5.87 -67.16 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.95 Total: 32.64 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 7.28 Total: -0.11 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -2.78 Total: -89.37 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -1.60 Total: -53.93 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -73.03 5.87 -67.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.020 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds