Wall clock time and date at job start Tue Mar 31 2020 15:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00176 * 2 1 4 4 C 1.53001 * 109.46873 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47086 * 65.00149 * 4 3 2 6 6 C 1.37098 * 119.99966 * 269.99702 * 5 4 3 7 7 H 1.08006 * 119.99757 * 56.05252 * 6 5 4 8 8 C 1.38950 * 120.00111 * 236.05999 * 6 5 4 9 9 N 1.31410 * 119.99969 * 200.80862 * 8 6 5 10 10 Si 1.86794 * 119.99927 * 20.80267 * 8 6 5 11 11 H 1.48497 * 109.47330 * 95.12288 * 10 8 6 12 12 H 1.48504 * 109.47371 * 215.12166 * 10 8 6 13 13 H 1.48505 * 109.47320 * 335.11937 * 10 8 6 14 14 C 1.34773 * 120.00390 * 89.99263 * 5 4 3 15 15 O 1.21292 * 119.99923 * 356.02583 * 14 5 4 16 16 C 1.50702 * 120.00201 * 176.01849 * 14 5 4 17 17 H 1.09000 * 109.46854 * 317.42880 * 16 14 5 18 18 C 1.52996 * 109.46767 * 77.43137 * 16 14 5 19 19 C 1.53002 * 109.47282 * 197.42884 * 16 14 5 20 20 N 1.46498 * 109.47117 * 173.68737 * 19 16 14 21 21 C 1.36831 * 125.06118 * 265.02258 * 20 19 16 22 22 C 1.34233 * 109.92543 * 180.02562 * 21 20 19 23 23 C 1.46482 * 107.00446 * 359.97438 * 22 21 20 24 24 C 1.39626 * 134.03915 * 180.02562 * 23 22 21 25 25 C 1.36627 * 119.76834 * 179.97438 * 24 23 22 26 26 C 1.38824 * 120.52597 * 359.97438 * 25 24 23 27 27 C 1.37747 * 120.66995 * 0.04383 * 26 25 24 28 28 C 1.37680 * 125.06316 * 85.02692 * 20 19 16 29 29 H 1.08999 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00588 * 1 2 3 31 31 H 1.08998 * 109.46967 * 60.00177 * 1 2 3 32 32 H 1.09001 * 109.46854 * 59.99710 * 3 2 1 33 33 H 1.09004 * 109.46635 * 299.99611 * 3 2 1 34 34 H 1.08999 * 109.47146 * 304.99783 * 4 3 2 35 35 H 1.08995 * 109.46603 * 184.99486 * 4 3 2 36 36 H 0.97003 * 120.00252 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47206 * 186.12910 * 18 16 14 38 38 H 1.08996 * 109.47380 * 306.12471 * 18 16 14 39 39 H 1.08993 * 109.47520 * 66.12838 * 18 16 14 40 40 H 1.09009 * 109.46940 * 53.68457 * 19 16 14 41 41 H 1.08999 * 109.47206 * 293.68993 * 19 16 14 42 42 H 1.07999 * 125.03857 * 0.26839 * 21 20 19 43 43 H 1.08005 * 126.49748 * 180.02562 * 22 21 20 44 44 H 1.08009 * 120.11359 * 359.96054 * 24 23 22 45 45 H 1.08001 * 119.73232 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.66894 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.11183 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7992 -1.3346 7 1 3.2529 -1.4316 -1.1053 8 6 5.3080 -1.3671 -1.7141 9 7 5.3388 -2.5923 -2.1881 10 14 6.8908 -0.3888 -1.5507 11 1 7.5476 -0.7216 -0.2611 12 1 7.8018 -0.7301 -2.6727 13 1 6.5815 1.0632 -1.5884 14 6 4.2633 1.3327 -2.3201 15 8 4.0873 2.5317 -2.2695 16 6 4.8026 0.7027 -3.5784 17 1 5.5518 -0.0450 -3.3181 18 6 3.6593 0.0342 -4.3444 19 6 5.4418 1.7813 -4.4553 20 7 6.0975 1.1515 -5.6040 21 6 7.4228 0.8169 -5.6665 22 6 7.6983 0.2594 -6.8561 23 6 6.4471 0.2343 -7.6174 24 6 6.0955 -0.2135 -8.8924 25 6 4.8042 -0.0919 -9.3219 26 6 3.8381 0.4729 -8.5004 27 6 4.1631 0.9215 -7.2392 28 6 5.4721 0.8083 -6.7815 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5684 0.8427 35 1 3.9785 2.1764 0.0901 36 1 6.1834 -2.9887 -2.4534 37 1 4.0636 -0.5132 -5.1958 38 1 3.1348 -0.6566 -3.6843 39 1 2.9650 0.7960 -4.6988 40 1 6.1800 2.3328 -3.8728 41 1 4.6712 2.4670 -4.8077 42 1 8.1401 0.9742 -4.8746 43 1 8.6599 -0.1029 -7.1885 44 1 6.8418 -0.6541 -9.5369 45 1 4.5328 -0.4388 -10.3080 46 1 2.8214 0.5618 -8.8538 47 1 3.4043 1.3599 -6.6079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:14 Heat of formation + Delta-G solvation = -2.482309 kcal Electronic energy + Delta-G solvation = -29627.987536 eV Core-core repulsion = 25777.308123 eV Total energy + Delta-G solvation = -3850.679413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14359 -39.32528 -37.31405 -36.79495 -34.82689 -34.29145 -32.24360 -31.13998 -29.82698 -29.15175 -28.48798 -26.00545 -25.74012 -24.54925 -23.53101 -22.41220 -21.49181 -21.20282 -19.79713 -18.92085 -17.70617 -16.66989 -16.20275 -16.04974 -15.91354 -15.22530 -15.17562 -15.10550 -14.63479 -14.52067 -14.13310 -13.84505 -13.64677 -13.40518 -13.24042 -12.87668 -12.62994 -12.60041 -12.36270 -12.11010 -11.79395 -11.49826 -11.47088 -11.41826 -11.36768 -11.31866 -11.09423 -10.93418 -10.62796 -10.58508 -10.49896 -10.25724 -9.89785 -9.34928 -9.23229 -9.04860 -8.66275 -7.88392 -7.57945 -7.35618 -6.48974 -4.24276 1.39848 1.90903 2.97495 2.98716 3.10838 3.14404 3.17635 3.60229 4.02203 4.18645 4.27142 4.40614 4.83645 4.93538 5.03658 5.11000 5.24424 5.35687 5.37505 5.50417 5.54624 5.63979 5.66614 5.71736 5.79512 5.79782 5.89179 5.91790 5.93600 5.97059 6.06486 6.11345 6.14830 6.19772 6.27323 6.32145 6.51006 6.57677 6.66110 6.71880 6.84334 7.04304 7.07429 7.10330 7.53063 7.60922 7.62473 7.67060 7.76232 8.57123 8.91932 9.22382 9.63546 10.59290 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004455 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.016111 B = 6283.755986 C = 7093.426188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.460 5.460 6 C -0.341 4.341 7 H 0.108 0.892 8 C 0.078 3.922 9 N -0.849 5.849 10 Si 0.844 3.156 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.504 3.496 15 O -0.600 6.600 16 C -0.115 4.115 17 H 0.100 0.900 18 C -0.127 4.127 19 C 0.123 3.877 20 N -0.473 5.473 21 C 0.057 3.943 22 C -0.213 4.213 23 C -0.111 4.111 24 C -0.075 4.075 25 C -0.152 4.152 26 C -0.108 4.108 27 C -0.120 4.120 28 C 0.106 3.894 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.275 0.725 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.161 0.839 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 5.200 -6.213 8.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.024 4.024 4 C -0.014 4.014 5 N -0.180 5.180 6 C -0.468 4.468 7 H 0.126 0.874 8 C -0.130 4.130 9 N -0.483 5.483 10 Si 0.669 3.331 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.185 1.185 14 C 0.293 3.707 15 O -0.485 6.485 16 C -0.136 4.136 17 H 0.118 0.882 18 C -0.185 4.185 19 C 0.002 3.998 20 N -0.155 5.155 21 C -0.069 4.069 22 C -0.238 4.238 23 C -0.116 4.116 24 C -0.094 4.094 25 C -0.171 4.171 26 C -0.127 4.127 27 C -0.140 4.140 28 C 0.000 4.000 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.178 0.822 43 H 0.161 0.839 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.321 5.584 -5.925 8.248 hybrid contribution 0.814 0.416 0.421 1.007 sum -0.507 6.000 -5.504 8.158 Atomic orbital electron populations 1.22655 0.82746 1.02102 0.98951 1.88096 1.18029 1.27403 1.95105 1.22925 0.95426 0.84769 0.99234 1.21566 0.91597 0.98804 0.89426 1.43527 1.60118 1.07084 1.07286 1.19018 0.98394 0.79233 1.50199 0.87422 1.25604 0.97721 0.95154 0.94538 1.69724 1.27381 1.14470 1.36749 0.87350 0.84892 0.81986 0.78828 1.20301 1.20029 1.18550 1.20312 0.79426 0.86248 0.84676 1.90527 1.58583 1.15513 1.83912 1.21545 1.00520 0.97717 0.93849 0.88202 1.21661 0.96534 1.00233 1.00043 1.21744 0.98067 0.94710 0.85329 1.44118 1.07461 1.51398 1.12478 1.21824 0.84975 1.01060 0.99066 1.21553 0.97386 1.10205 0.94632 1.19201 0.93497 1.03996 0.94923 1.20176 0.96191 0.99117 0.93904 1.20528 0.93243 1.03372 0.99996 1.20729 0.99109 0.99553 0.93346 1.20189 0.93056 1.04034 0.96746 1.18230 0.94178 1.01051 0.86556 0.90107 0.95050 0.94769 0.93943 0.93460 0.90139 0.90482 0.91440 0.92404 0.89518 0.93920 0.89481 0.88913 0.82178 0.83924 0.86576 0.86568 0.86170 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.04 9.76 -35.23 -0.34 -7.39 16 3 C 0.05 0.98 6.28 37.16 0.23 1.21 16 4 C 0.11 2.20 5.78 -4.04 -0.02 2.17 16 5 N -0.46 -10.64 1.83 -114.81 -0.21 -10.85 16 6 C -0.34 -8.61 7.55 -14.93 -0.11 -8.72 16 7 H 0.11 3.00 7.52 -52.48 -0.39 2.61 16 8 C 0.08 1.98 4.07 -17.47 -0.07 1.91 16 9 N -0.85 -22.77 13.96 55.50 0.77 -21.99 16 10 Si 0.84 19.60 25.00 -169.99 -4.25 15.34 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 H -0.26 -6.07 5.88 56.52 0.33 -5.74 16 14 C 0.50 11.60 4.91 -10.99 -0.05 11.55 16 15 O -0.60 -14.31 15.75 5.55 0.09 -14.22 16 16 C -0.11 -2.45 1.51 -91.77 -0.14 -2.58 16 17 H 0.10 2.32 2.86 -51.93 -0.15 2.17 16 18 C -0.13 -2.60 7.71 37.16 0.29 -2.31 16 19 C 0.12 2.31 4.79 -4.04 -0.02 2.29 16 20 N -0.47 -8.49 2.70 -114.42 -0.31 -8.80 16 21 C 0.06 0.95 11.27 -16.73 -0.19 0.76 16 22 C -0.21 -3.36 11.08 -37.67 -0.42 -3.77 16 23 C -0.11 -1.86 6.37 -105.14 -0.67 -2.53 16 24 C -0.08 -1.08 10.05 -39.65 -0.40 -1.48 16 25 C -0.15 -2.01 9.97 -39.95 -0.40 -2.41 16 26 C -0.11 -1.49 10.01 -39.54 -0.40 -1.88 16 27 C -0.12 -1.90 8.37 -39.43 -0.33 -2.23 16 28 C 0.11 1.86 5.55 -83.99 -0.47 1.40 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 35 H 0.08 1.48 7.48 -51.93 -0.39 1.10 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.06 1.18 6.02 -51.93 -0.31 0.86 16 38 H 0.09 1.98 6.83 -51.93 -0.35 1.62 16 39 H 0.04 0.78 7.07 -51.93 -0.37 0.42 16 40 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16 41 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 42 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.12 1.82 6.64 -52.49 -0.35 1.47 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -29.39 373.35 -7.68 -37.07 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.01 Total: 10.26 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -2.05 Total: -5.06 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.26 Total: -41.64 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.26 Total: -21.61 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.25 Total: 15.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.39 -7.68 -37.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.592 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds