Wall clock time and date at job start Tue Mar 31 2020 15:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00176 * 2 1 4 4 C 1.53001 * 109.46873 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47086 * 65.00149 * 4 3 2 6 6 C 1.37098 * 119.99966 * 269.99702 * 5 4 3 7 7 H 1.08006 * 119.99757 * 56.05252 * 6 5 4 8 8 C 1.38950 * 120.00111 * 236.05999 * 6 5 4 9 9 N 1.31410 * 119.99969 * 200.80862 * 8 6 5 10 10 Si 1.86794 * 119.99927 * 20.80267 * 8 6 5 11 11 H 1.48497 * 109.47330 * 95.12288 * 10 8 6 12 12 H 1.48504 * 109.47371 * 215.12166 * 10 8 6 13 13 H 1.48505 * 109.47320 * 335.11937 * 10 8 6 14 14 C 1.34773 * 120.00390 * 89.99263 * 5 4 3 15 15 O 1.21292 * 119.99923 * 356.02583 * 14 5 4 16 16 C 1.50702 * 120.00201 * 176.01849 * 14 5 4 17 17 H 1.09000 * 109.46854 * 317.42880 * 16 14 5 18 18 C 1.52996 * 109.46767 * 77.43137 * 16 14 5 19 19 C 1.53002 * 109.47282 * 197.42884 * 16 14 5 20 20 N 1.46498 * 109.47117 * 173.68737 * 19 16 14 21 21 C 1.36831 * 125.06118 * 265.02258 * 20 19 16 22 22 C 1.34233 * 109.92543 * 180.02562 * 21 20 19 23 23 C 1.46482 * 107.00446 * 359.97438 * 22 21 20 24 24 C 1.39626 * 134.03915 * 180.02562 * 23 22 21 25 25 C 1.36627 * 119.76834 * 179.97438 * 24 23 22 26 26 C 1.38824 * 120.52597 * 359.97438 * 25 24 23 27 27 C 1.37747 * 120.66995 * 0.04383 * 26 25 24 28 28 C 1.37680 * 125.06316 * 85.02692 * 20 19 16 29 29 H 1.08999 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00588 * 1 2 3 31 31 H 1.08998 * 109.46967 * 60.00177 * 1 2 3 32 32 H 1.09001 * 109.46854 * 59.99710 * 3 2 1 33 33 H 1.09004 * 109.46635 * 299.99611 * 3 2 1 34 34 H 1.08999 * 109.47146 * 304.99783 * 4 3 2 35 35 H 1.08995 * 109.46603 * 184.99486 * 4 3 2 36 36 H 0.97003 * 120.00252 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47206 * 186.12910 * 18 16 14 38 38 H 1.08996 * 109.47380 * 306.12471 * 18 16 14 39 39 H 1.08993 * 109.47520 * 66.12838 * 18 16 14 40 40 H 1.09009 * 109.46940 * 53.68457 * 19 16 14 41 41 H 1.08999 * 109.47206 * 293.68993 * 19 16 14 42 42 H 1.07999 * 125.03857 * 0.26839 * 21 20 19 43 43 H 1.08005 * 126.49748 * 180.02562 * 22 21 20 44 44 H 1.08009 * 120.11359 * 359.96054 * 24 23 22 45 45 H 1.08001 * 119.73232 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.66894 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.11183 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7992 -1.3346 7 1 3.2529 -1.4316 -1.1053 8 6 5.3080 -1.3671 -1.7141 9 7 5.3388 -2.5923 -2.1881 10 14 6.8908 -0.3888 -1.5507 11 1 7.5476 -0.7216 -0.2611 12 1 7.8018 -0.7301 -2.6727 13 1 6.5815 1.0632 -1.5884 14 6 4.2633 1.3327 -2.3201 15 8 4.0873 2.5317 -2.2695 16 6 4.8026 0.7027 -3.5784 17 1 5.5518 -0.0450 -3.3181 18 6 3.6593 0.0342 -4.3444 19 6 5.4418 1.7813 -4.4553 20 7 6.0975 1.1515 -5.6040 21 6 7.4228 0.8169 -5.6665 22 6 7.6983 0.2594 -6.8561 23 6 6.4471 0.2343 -7.6174 24 6 6.0955 -0.2135 -8.8924 25 6 4.8042 -0.0919 -9.3219 26 6 3.8381 0.4729 -8.5004 27 6 4.1631 0.9215 -7.2392 28 6 5.4721 0.8083 -6.7815 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5684 0.8427 35 1 3.9785 2.1764 0.0901 36 1 6.1834 -2.9887 -2.4534 37 1 4.0636 -0.5132 -5.1958 38 1 3.1348 -0.6566 -3.6843 39 1 2.9650 0.7960 -4.6988 40 1 6.1800 2.3328 -3.8728 41 1 4.6712 2.4670 -4.8077 42 1 8.1401 0.9742 -4.8746 43 1 8.6599 -0.1029 -7.1885 44 1 6.8418 -0.6541 -9.5369 45 1 4.5328 -0.4388 -10.3080 46 1 2.8214 0.5618 -8.8538 47 1 3.4043 1.3599 -6.6079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:13 Heat of formation + Delta-G solvation = -17.902888 kcal Electronic energy + Delta-G solvation = -29628.656222 eV Core-core repulsion = 25777.308123 eV Total energy + Delta-G solvation = -3851.348099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39430 -41.06215 -38.72538 -37.97683 -36.65927 -35.81565 -34.09355 -32.50356 -31.15716 -30.61616 -29.66877 -27.32530 -27.21262 -26.42451 -25.07929 -23.62849 -22.96452 -22.38161 -21.26680 -20.55371 -19.46113 -18.07659 -17.70497 -17.45551 -17.32215 -16.78877 -16.64233 -16.35572 -16.20093 -16.05553 -15.62390 -15.39221 -15.03475 -14.86885 -14.72665 -14.38349 -14.23846 -13.95449 -13.62694 -13.44679 -13.27252 -13.15965 -13.02944 -12.98516 -12.79275 -12.73580 -12.63099 -12.45548 -12.15920 -12.03929 -11.98058 -11.76756 -11.56127 -10.98746 -10.65501 -10.53406 -10.44246 -9.44175 -9.07386 -8.55929 -8.48340 -6.25448 0.25437 0.76528 1.12481 1.24356 1.28195 1.70725 1.79674 1.87090 2.10995 2.64604 2.85891 3.02494 3.05743 3.60076 3.73579 3.77814 3.88981 3.99310 4.15067 4.20156 4.24739 4.31544 4.35047 4.39393 4.43248 4.51798 4.54525 4.57132 4.60166 4.67543 4.67763 4.77922 4.83645 4.87381 4.93501 4.95651 5.03035 5.05679 5.20838 5.32880 5.61616 5.72382 5.74541 5.88244 5.89556 5.95695 6.33647 6.34407 6.37168 6.52480 6.95911 7.32554 7.74297 8.62641 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004455 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.016111 B = 6283.755986 C = 7093.426188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.061 3.939 4 C 0.101 3.899 5 N -0.467 5.467 6 C -0.331 4.331 7 H 0.075 0.925 8 C 0.050 3.950 9 N -0.883 5.883 10 Si 0.892 3.108 11 H -0.278 1.278 12 H -0.265 1.265 13 H -0.263 1.263 14 C 0.500 3.500 15 O -0.609 6.609 16 C -0.114 4.114 17 H 0.082 0.918 18 C -0.110 4.110 19 C 0.134 3.866 20 N -0.484 5.484 21 C 0.031 3.969 22 C -0.209 4.209 23 C -0.137 4.137 24 C -0.081 4.081 25 C -0.150 4.150 26 C -0.103 4.103 27 C -0.142 4.142 28 C 0.082 3.918 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.277 0.723 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.173 0.827 43 H 0.168 0.832 44 H 0.141 0.859 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 5.917 -7.449 9.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.016 4.016 4 C -0.022 4.022 5 N -0.188 5.188 6 C -0.459 4.459 7 H 0.092 0.908 8 C -0.155 4.155 9 N -0.519 5.519 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.190 1.190 13 H -0.187 1.187 14 C 0.289 3.711 15 O -0.495 6.495 16 C -0.136 4.136 17 H 0.100 0.900 18 C -0.167 4.167 19 C 0.011 3.989 20 N -0.166 5.166 21 C -0.094 4.094 22 C -0.233 4.233 23 C -0.141 4.141 24 C -0.099 4.099 25 C -0.169 4.169 26 C -0.122 4.122 27 C -0.163 4.163 28 C -0.024 4.024 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.190 0.810 43 H 0.185 0.815 44 H 0.159 0.841 45 H 0.168 0.832 46 H 0.166 0.834 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.299 6.304 -7.161 9.629 hybrid contribution 0.669 0.164 0.732 1.006 sum -0.630 6.468 -6.429 9.141 Atomic orbital electron populations 1.22852 0.80437 1.03201 1.00363 1.88044 1.20685 1.28136 1.95382 1.22829 0.93820 0.84686 1.00293 1.21768 0.93418 0.98933 0.88066 1.43610 1.60265 1.06371 1.08513 1.18620 0.97432 0.79935 1.49892 0.90755 1.25953 0.99740 0.95665 0.94127 1.69801 1.28026 1.15926 1.38108 0.86609 0.82240 0.80700 0.78847 1.20400 1.18963 1.18722 1.20598 0.79179 0.86199 0.85103 1.90508 1.59067 1.15753 1.84154 1.21530 1.00227 0.98071 0.93772 0.89973 1.21470 0.96342 0.99856 0.99074 1.21525 0.98106 0.93761 0.85458 1.44092 1.07944 1.52245 1.12339 1.22185 0.84920 1.02145 1.00142 1.21927 0.98225 1.09052 0.94119 1.19600 0.93717 1.04808 0.96023 1.20561 0.97432 0.98576 0.93334 1.20961 0.92616 1.02135 1.01209 1.21149 1.00702 0.97941 0.92445 1.20376 0.92642 1.05335 0.97930 1.18603 0.95150 1.01916 0.86719 0.89302 0.92407 0.94451 0.90291 0.94769 0.89901 0.89612 0.91286 0.92531 0.92524 0.92290 0.89421 0.88553 0.81005 0.81467 0.84127 0.83242 0.83430 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -15.36 9.76 -148.98 -1.45 -16.81 16 3 C 0.06 2.14 6.28 71.98 0.45 2.60 16 4 C 0.10 4.00 5.78 86.38 0.50 4.50 16 5 N -0.47 -21.81 1.83 -635.54 -1.16 -22.97 16 6 C -0.33 -17.13 7.55 84.04 0.63 -16.49 16 7 H 0.07 4.33 7.52 -2.91 -0.02 4.31 16 8 C 0.05 2.62 4.07 84.93 0.35 2.96 16 9 N -0.88 -48.38 13.96 21.66 0.30 -48.07 16 10 Si 0.89 40.70 25.00 68.60 1.72 42.42 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.26 -11.97 5.88 99.48 0.59 -11.38 16 14 C 0.50 23.04 4.91 87.66 0.43 23.47 16 15 O -0.61 -28.77 15.75 -3.07 -0.05 -28.82 16 16 C -0.11 -4.90 1.51 -11.54 -0.02 -4.92 16 17 H 0.08 3.85 2.86 -2.39 -0.01 3.84 16 18 C -0.11 -4.57 7.71 71.98 0.56 -4.02 16 19 C 0.13 5.00 4.79 86.38 0.41 5.42 16 20 N -0.48 -17.23 2.70 -515.93 -1.39 -18.63 16 21 C 0.03 1.01 11.27 83.00 0.94 1.95 16 22 C -0.21 -6.32 11.08 23.50 0.26 -6.06 16 23 C -0.14 -4.38 6.37 -20.20 -0.13 -4.51 16 24 C -0.08 -2.11 10.05 22.23 0.22 -1.89 16 25 C -0.15 -3.51 9.97 22.03 0.22 -3.29 16 26 C -0.10 -2.60 10.01 22.29 0.22 -2.38 16 27 C -0.14 -4.37 8.37 22.37 0.19 -4.19 16 28 C 0.08 2.82 5.55 39.03 0.22 3.03 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 3.21 8.04 -2.39 -0.02 3.19 16 35 H 0.09 3.23 7.48 -2.39 -0.02 3.21 16 36 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.06 2.34 6.02 -2.39 -0.01 2.33 16 38 H 0.06 2.67 6.83 -2.39 -0.02 2.65 16 39 H 0.06 2.19 7.07 -2.39 -0.02 2.18 16 40 H 0.09 3.21 8.11 -2.38 -0.02 3.19 16 41 H 0.10 3.46 8.10 -2.39 -0.02 3.44 16 42 H 0.17 4.96 8.06 -2.91 -0.02 4.94 16 43 H 0.17 4.01 8.06 -2.91 -0.02 3.98 16 44 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 47 H 0.12 3.55 6.64 -2.91 -0.02 3.53 16 Total: -1.00 -63.92 373.35 5.50 -58.41 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.84 Total: 36.26 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 6.70 Total: -1.79 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -2.25 Total: -89.67 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.50 Total: -45.63 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.72 Total: 42.42 kcal Total: -63.92 5.50 -58.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.511 kcal (2) G-P(sol) polarization free energy of solvation -63.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds