Wall clock time and date at job start Tue Mar 31 2020 15:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99895 * 2 1 4 4 C 1.53000 * 109.47610 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46996 * 64.99512 * 4 3 2 6 6 C 1.37095 * 120.00303 * 264.65085 * 5 4 3 7 7 H 1.08002 * 119.99957 * 137.56748 * 6 5 4 8 8 C 1.38948 * 119.99977 * 317.56580 * 6 5 4 9 9 N 1.31414 * 119.99917 * 348.63220 * 8 6 5 10 10 Si 1.86804 * 119.99927 * 168.62808 * 8 6 5 11 11 H 1.48498 * 109.46747 * 90.00257 * 10 8 6 12 12 H 1.48502 * 109.47194 * 209.99981 * 10 8 6 13 13 H 1.48497 * 109.47194 * 330.00090 * 10 8 6 14 14 C 1.34777 * 119.99244 * 84.65132 * 5 4 3 15 15 O 1.21287 * 120.00278 * 6.12271 * 14 5 4 16 16 C 1.50707 * 119.99329 * 185.84757 * 14 5 4 17 17 H 1.08994 * 109.47012 * 33.46291 * 16 14 5 18 18 C 1.53001 * 109.46923 * 273.46290 * 16 14 5 19 19 C 1.52997 * 109.46708 * 153.46173 * 16 14 5 20 20 N 1.46504 * 109.47052 * 184.99553 * 19 16 14 21 21 C 1.36831 * 125.06656 * 265.03043 * 20 19 16 22 22 C 1.34234 * 109.92918 * 180.02562 * 21 20 19 23 23 C 1.46488 * 107.00087 * 359.97438 * 22 21 20 24 24 C 1.39627 * 134.03572 * 180.02562 * 23 22 21 25 25 C 1.36631 * 119.76125 * 179.27221 * 24 23 22 26 26 C 1.38826 * 120.53176 * 0.60269 * 25 24 23 27 27 C 1.37750 * 120.66158 * 359.62940 * 26 25 24 28 28 C 1.37689 * 125.05923 * 84.72355 * 20 19 16 29 29 H 1.09000 * 109.47761 * 300.00010 * 1 2 3 30 30 H 1.09004 * 109.47025 * 60.00319 * 1 2 3 31 31 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47492 * 59.99425 * 3 2 1 33 33 H 1.08996 * 109.47179 * 300.00174 * 3 2 1 34 34 H 1.09008 * 109.46944 * 305.00259 * 4 3 2 35 35 H 1.09000 * 109.47594 * 185.00092 * 4 3 2 36 36 H 0.97003 * 119.99320 * 179.97438 * 9 8 6 37 37 H 1.09005 * 109.46499 * 184.72192 * 18 16 14 38 38 H 1.09000 * 109.46834 * 304.71707 * 18 16 14 39 39 H 1.08997 * 109.47307 * 64.72099 * 18 16 14 40 40 H 1.09000 * 109.47509 * 304.99957 * 19 16 14 41 41 H 1.09009 * 109.47244 * 65.00237 * 19 16 14 42 42 H 1.08000 * 125.03412 * 359.96220 * 21 20 19 43 43 H 1.08002 * 126.50089 * 180.02562 * 22 21 20 44 44 H 1.07995 * 120.11793 * 359.97315 * 24 23 22 45 45 H 1.08005 * 119.73488 * 180.23383 * 25 24 23 46 46 H 1.08000 * 119.67126 * 179.61051 * 26 25 24 47 47 H 1.08003 * 120.10939 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2037 -0.7870 -1.3032 7 1 3.8655 -1.3588 -2.1547 8 6 4.8689 -1.4206 -0.2607 9 7 5.4745 -0.7074 0.6621 10 14 4.9022 -3.2861 -0.1709 11 1 6.0870 -3.7960 -0.9068 12 1 4.9809 -3.7120 1.2496 13 1 3.6654 -3.8334 -0.7840 14 6 4.1594 1.3213 -2.3507 15 8 4.0669 2.5284 -2.2781 16 6 4.4847 0.6683 -3.6694 17 1 3.9828 -0.2973 -3.7303 18 6 5.9972 0.4646 -3.7783 19 6 4.0070 1.5645 -4.8137 20 7 4.2147 0.8778 -6.0911 21 6 5.3084 1.0333 -6.8985 22 6 5.1844 0.2624 -7.9904 23 6 3.9071 -0.4451 -7.8724 24 6 3.2317 -1.3688 -8.6725 25 6 2.0269 -1.8669 -8.2639 26 6 1.4624 -1.4527 -7.0651 27 6 2.1093 -0.5388 -6.2628 28 6 3.3411 -0.0247 -6.6551 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8465 0.8899 33 1 1.6885 1.8463 -0.8899 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1767 0.0902 36 1 5.9385 -1.1498 1.3900 37 1 6.2405 0.0700 -4.7648 38 1 6.5036 1.4190 -3.6336 39 1 6.3249 -0.2401 -3.0141 40 1 2.9466 1.7822 -4.6864 41 1 4.5727 2.4962 -4.8060 42 1 6.1467 1.6812 -6.6889 43 1 5.8925 0.1789 -8.8017 44 1 3.6655 -1.6969 -9.6055 45 1 1.5066 -2.5842 -8.8814 46 1 0.5063 -1.8508 -6.7587 47 1 1.6617 -0.2224 -5.3322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:18 Heat of formation + Delta-G solvation = -15.062048 kcal Electronic energy + Delta-G solvation = -29130.789123 eV Core-core repulsion = 25279.564212 eV Total energy + Delta-G solvation = -3851.224911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16426 -38.97696 -37.20458 -36.82145 -34.84385 -33.97938 -31.61045 -31.51238 -29.70418 -28.86401 -28.66778 -25.89656 -25.86952 -24.79464 -23.36934 -22.39812 -21.48664 -20.84861 -19.87560 -19.01501 -17.10264 -16.80109 -16.20162 -16.11512 -15.53716 -15.35159 -15.21892 -14.89375 -14.46434 -14.36880 -14.22715 -13.85868 -13.66094 -13.47228 -13.11260 -12.90133 -12.62478 -12.48061 -12.13898 -12.00612 -11.65492 -11.52433 -11.45363 -11.36465 -11.22578 -11.09293 -11.02481 -10.79882 -10.68067 -10.60428 -10.41889 -10.34764 -10.00623 -9.45543 -9.15913 -9.02065 -8.49387 -7.96861 -7.49340 -7.42957 -6.33155 -4.10261 1.32676 1.83512 2.91158 3.07283 3.14745 3.23953 3.28921 3.77732 4.11020 4.14678 4.45276 4.66014 4.87623 4.98192 5.03460 5.07789 5.18903 5.30813 5.39465 5.59266 5.61183 5.63160 5.67188 5.71332 5.83664 5.88423 5.93549 5.98508 6.01175 6.03544 6.08482 6.11337 6.21074 6.25458 6.29878 6.42397 6.60168 6.65059 6.70822 6.77766 6.84554 6.96548 7.02818 7.26474 7.46340 7.47590 7.54621 7.78524 7.99238 8.34131 9.08018 9.43260 9.85672 10.69839 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011099 B = 0.004026 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.189681 B = 6952.748966 C = 7019.323382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.115 3.885 5 N -0.424 5.424 6 C -0.320 4.320 7 H 0.084 0.916 8 C 0.049 3.951 9 N -0.870 5.870 10 Si 0.915 3.085 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.481 3.519 15 O -0.611 6.611 16 C -0.106 4.106 17 H 0.092 0.908 18 C -0.132 4.132 19 C 0.127 3.873 20 N -0.473 5.473 21 C 0.063 3.937 22 C -0.218 4.218 23 C -0.111 4.111 24 C -0.077 4.077 25 C -0.152 4.152 26 C -0.106 4.106 27 C -0.121 4.121 28 C 0.100 3.900 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.268 0.732 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.165 0.835 43 H 0.142 0.858 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.121 0.879 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 0.024 -10.644 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.026 4.026 4 C -0.009 4.009 5 N -0.140 5.140 6 C -0.449 4.449 7 H 0.102 0.898 8 C -0.156 4.156 9 N -0.508 5.508 10 Si 0.741 3.259 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.193 1.193 14 C 0.269 3.731 15 O -0.498 6.498 16 C -0.128 4.128 17 H 0.110 0.890 18 C -0.189 4.189 19 C 0.005 3.995 20 N -0.154 5.154 21 C -0.064 4.064 22 C -0.243 4.243 23 C -0.116 4.116 24 C -0.095 4.095 25 C -0.171 4.171 26 C -0.125 4.125 27 C -0.141 4.141 28 C -0.006 4.006 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.182 0.818 43 H 0.160 0.840 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.438 0.588 -10.065 11.015 hybrid contribution -0.230 -0.784 0.363 0.894 sum -4.667 -0.196 -9.702 10.768 Atomic orbital electron populations 1.22648 0.83407 1.01778 0.98815 1.88142 1.17376 1.27705 1.95027 1.23059 0.96683 0.84301 0.98522 1.21476 0.88818 0.99173 0.91443 1.43232 1.56036 1.07346 1.07398 1.19226 1.35800 0.82171 1.07663 0.89808 1.25324 0.94192 0.99752 0.96320 1.69805 1.31567 1.35881 1.13506 0.86125 0.78780 0.83285 0.77663 1.20423 1.20811 1.19298 1.20137 0.80129 0.86436 0.86385 1.90521 1.58009 1.14518 1.86774 1.21305 0.98998 0.99986 0.92488 0.88963 1.21593 0.93223 1.02210 1.01914 1.21696 1.02752 0.95266 0.79771 1.44185 1.16490 1.36268 1.18443 1.21815 0.91431 1.01679 0.91428 1.21567 0.98202 1.03846 1.00730 1.19210 0.96197 1.00815 0.95336 1.20187 0.94698 0.95992 0.98665 1.20549 0.96714 1.02279 0.97531 1.20743 0.99666 0.97472 0.94660 1.20114 0.93376 0.99847 1.00808 1.18280 0.93346 0.94698 0.94292 0.95126 0.95062 0.90379 0.94228 0.94415 0.86616 0.91226 0.92125 0.92935 0.93077 0.90502 0.89955 0.88533 0.81775 0.84006 0.86571 0.86546 0.86139 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.59 10.43 -35.23 -0.37 -7.96 16 3 C 0.05 1.06 6.24 37.16 0.23 1.29 16 4 C 0.11 2.68 5.30 -4.04 -0.02 2.66 16 5 N -0.42 -10.27 2.46 -114.81 -0.28 -10.55 16 6 C -0.32 -7.95 7.85 -14.93 -0.12 -8.07 16 7 H 0.08 2.06 6.53 -52.49 -0.34 1.72 16 8 C 0.05 1.23 5.11 -17.47 -0.09 1.14 16 9 N -0.87 -22.68 11.29 55.50 0.63 -22.06 16 10 Si 0.91 19.94 29.57 -169.99 -5.03 14.91 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 C 0.48 11.06 6.68 -10.98 -0.07 10.99 16 15 O -0.61 -15.05 15.86 5.55 0.09 -14.96 16 16 C -0.11 -2.04 2.24 -91.77 -0.21 -2.24 16 17 H 0.09 1.88 6.53 -51.93 -0.34 1.54 16 18 C -0.13 -2.40 8.96 37.16 0.33 -2.07 16 19 C 0.13 2.11 4.88 -4.04 -0.02 2.09 16 20 N -0.47 -7.34 2.51 -114.42 -0.29 -7.63 16 21 C 0.06 0.85 9.75 -16.73 -0.16 0.69 16 22 C -0.22 -2.93 11.08 -37.67 -0.42 -3.35 16 23 C -0.11 -1.67 6.37 -105.14 -0.67 -2.34 16 24 C -0.08 -1.02 10.05 -39.64 -0.40 -1.41 16 25 C -0.15 -1.90 9.97 -39.94 -0.40 -2.29 16 26 C -0.11 -1.41 10.01 -39.54 -0.40 -1.81 16 27 C -0.12 -1.85 10.00 -39.43 -0.39 -2.24 16 28 C 0.10 1.62 6.81 -83.99 -0.57 1.04 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.12 2.92 5.59 -51.92 -0.29 2.63 16 35 H 0.07 1.64 7.51 -51.93 -0.39 1.25 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.05 0.85 6.44 -51.93 -0.33 0.52 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.57 7.66 -51.93 -0.40 1.17 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.10 1.56 8.00 -51.92 -0.42 1.15 16 42 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -29.35 387.67 -8.81 -38.16 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.14 Total: 8.57 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.26 Total: -4.33 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.06 Total: -40.24 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.28 Total: -22.91 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.35 -8.81 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.099 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds