Wall clock time and date at job start Tue Mar 31 2020 15:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99895 * 2 1 4 4 C 1.53000 * 109.47610 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46996 * 64.99512 * 4 3 2 6 6 C 1.37095 * 120.00303 * 264.65085 * 5 4 3 7 7 H 1.08002 * 119.99957 * 137.56748 * 6 5 4 8 8 C 1.38948 * 119.99977 * 317.56580 * 6 5 4 9 9 N 1.31414 * 119.99917 * 348.63220 * 8 6 5 10 10 Si 1.86804 * 119.99927 * 168.62808 * 8 6 5 11 11 H 1.48498 * 109.46747 * 90.00257 * 10 8 6 12 12 H 1.48502 * 109.47194 * 209.99981 * 10 8 6 13 13 H 1.48497 * 109.47194 * 330.00090 * 10 8 6 14 14 C 1.34777 * 119.99244 * 84.65132 * 5 4 3 15 15 O 1.21287 * 120.00278 * 6.12271 * 14 5 4 16 16 C 1.50707 * 119.99329 * 185.84757 * 14 5 4 17 17 H 1.08994 * 109.47012 * 33.46291 * 16 14 5 18 18 C 1.53001 * 109.46923 * 273.46290 * 16 14 5 19 19 C 1.52997 * 109.46708 * 153.46173 * 16 14 5 20 20 N 1.46504 * 109.47052 * 184.99553 * 19 16 14 21 21 C 1.36831 * 125.06656 * 265.03043 * 20 19 16 22 22 C 1.34234 * 109.92918 * 180.02562 * 21 20 19 23 23 C 1.46488 * 107.00087 * 359.97438 * 22 21 20 24 24 C 1.39627 * 134.03572 * 180.02562 * 23 22 21 25 25 C 1.36631 * 119.76125 * 179.27221 * 24 23 22 26 26 C 1.38826 * 120.53176 * 0.60269 * 25 24 23 27 27 C 1.37750 * 120.66158 * 359.62940 * 26 25 24 28 28 C 1.37689 * 125.05923 * 84.72355 * 20 19 16 29 29 H 1.09000 * 109.47761 * 300.00010 * 1 2 3 30 30 H 1.09004 * 109.47025 * 60.00319 * 1 2 3 31 31 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47492 * 59.99425 * 3 2 1 33 33 H 1.08996 * 109.47179 * 300.00174 * 3 2 1 34 34 H 1.09008 * 109.46944 * 305.00259 * 4 3 2 35 35 H 1.09000 * 109.47594 * 185.00092 * 4 3 2 36 36 H 0.97003 * 119.99320 * 179.97438 * 9 8 6 37 37 H 1.09005 * 109.46499 * 184.72192 * 18 16 14 38 38 H 1.09000 * 109.46834 * 304.71707 * 18 16 14 39 39 H 1.08997 * 109.47307 * 64.72099 * 18 16 14 40 40 H 1.09000 * 109.47509 * 304.99957 * 19 16 14 41 41 H 1.09009 * 109.47244 * 65.00237 * 19 16 14 42 42 H 1.08000 * 125.03412 * 359.96220 * 21 20 19 43 43 H 1.08002 * 126.50089 * 180.02562 * 22 21 20 44 44 H 1.07995 * 120.11793 * 359.97315 * 24 23 22 45 45 H 1.08005 * 119.73488 * 180.23383 * 25 24 23 46 46 H 1.08000 * 119.67126 * 179.61051 * 26 25 24 47 47 H 1.08003 * 120.10939 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2037 -0.7870 -1.3032 7 1 3.8655 -1.3588 -2.1547 8 6 4.8689 -1.4206 -0.2607 9 7 5.4745 -0.7074 0.6621 10 14 4.9022 -3.2861 -0.1709 11 1 6.0870 -3.7960 -0.9068 12 1 4.9809 -3.7120 1.2496 13 1 3.6654 -3.8334 -0.7840 14 6 4.1594 1.3213 -2.3507 15 8 4.0669 2.5284 -2.2781 16 6 4.4847 0.6683 -3.6694 17 1 3.9828 -0.2973 -3.7303 18 6 5.9972 0.4646 -3.7783 19 6 4.0070 1.5645 -4.8137 20 7 4.2147 0.8778 -6.0911 21 6 5.3084 1.0333 -6.8985 22 6 5.1844 0.2624 -7.9904 23 6 3.9071 -0.4451 -7.8724 24 6 3.2317 -1.3688 -8.6725 25 6 2.0269 -1.8669 -8.2639 26 6 1.4624 -1.4527 -7.0651 27 6 2.1093 -0.5388 -6.2628 28 6 3.3411 -0.0247 -6.6551 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8465 0.8899 33 1 1.6885 1.8463 -0.8899 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1767 0.0902 36 1 5.9385 -1.1498 1.3900 37 1 6.2405 0.0700 -4.7648 38 1 6.5036 1.4190 -3.6336 39 1 6.3249 -0.2401 -3.0141 40 1 2.9466 1.7822 -4.6864 41 1 4.5727 2.4962 -4.8060 42 1 6.1467 1.6812 -6.6889 43 1 5.8925 0.1789 -8.8017 44 1 3.6655 -1.6969 -9.6055 45 1 1.5066 -2.5842 -8.8814 46 1 0.5063 -1.8508 -6.7587 47 1 1.6617 -0.2224 -5.3322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:17 Heat of formation + Delta-G solvation = -29.146183 kcal Electronic energy + Delta-G solvation = -29131.399857 eV Core-core repulsion = 25279.564212 eV Total energy + Delta-G solvation = -3851.835645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27654 -40.74483 -38.69983 -37.98931 -36.66403 -35.43628 -33.52303 -32.71916 -31.08808 -30.29237 -29.72405 -27.31351 -27.23141 -26.63344 -24.89683 -23.57063 -22.79055 -22.15494 -21.05880 -20.81112 -18.73159 -18.34321 -17.59696 -17.28573 -17.18160 -16.89809 -16.40742 -16.26401 -16.13422 -15.99057 -15.70599 -15.28161 -14.96183 -14.73415 -14.47585 -14.35090 -13.82773 -13.71851 -13.61646 -13.38648 -13.29769 -13.07816 -12.94029 -12.83698 -12.63728 -12.58345 -12.54204 -12.44737 -12.11059 -12.06027 -11.92475 -11.72426 -11.66049 -11.02010 -10.58444 -10.55403 -10.30760 -9.40878 -9.04614 -8.50919 -8.24822 -6.06739 0.27836 0.77172 1.40073 1.45641 1.55602 1.80507 1.93123 1.97465 2.33893 2.90292 3.00201 3.06609 3.15835 3.67280 3.81429 3.89511 4.00298 4.10891 4.18918 4.22358 4.31618 4.33466 4.40859 4.47562 4.50684 4.57277 4.60456 4.62259 4.63448 4.69536 4.76102 4.82354 4.85884 4.92870 4.98334 5.06634 5.13783 5.22925 5.28417 5.36221 5.51892 5.62725 5.75092 5.93274 6.00092 6.04735 6.38387 6.39036 6.40671 6.44124 7.15071 7.55820 7.97197 8.78287 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011099 B = 0.004026 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.189681 B = 6952.748966 C = 7019.323382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.112 3.888 5 N -0.435 5.435 6 C -0.324 4.324 7 H 0.081 0.919 8 C 0.011 3.989 9 N -0.898 5.898 10 Si 0.972 3.028 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.473 3.527 15 O -0.631 6.631 16 C -0.094 4.094 17 H 0.078 0.922 18 C -0.120 4.120 19 C 0.142 3.858 20 N -0.481 5.481 21 C 0.050 3.950 22 C -0.215 4.215 23 C -0.131 4.131 24 C -0.080 4.080 25 C -0.152 4.152 26 C -0.106 4.106 27 C -0.148 4.148 28 C 0.073 3.927 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.190 0.810 43 H 0.169 0.831 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.141 0.859 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 -1.164 -12.507 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.011 4.011 5 N -0.152 5.152 6 C -0.452 4.452 7 H 0.099 0.901 8 C -0.191 4.191 9 N -0.536 5.536 10 Si 0.796 3.204 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.262 3.738 15 O -0.520 6.520 16 C -0.116 4.116 17 H 0.096 0.904 18 C -0.177 4.177 19 C 0.020 3.980 20 N -0.163 5.163 21 C -0.074 4.074 22 C -0.240 4.240 23 C -0.136 4.136 24 C -0.099 4.099 25 C -0.171 4.171 26 C -0.125 4.125 27 C -0.169 4.169 28 C -0.033 4.033 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.207 0.793 43 H 0.187 0.813 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.884 -0.605 -11.948 12.922 hybrid contribution -0.172 -0.418 0.895 1.002 sum -5.056 -1.023 -11.053 12.197 Atomic orbital electron populations 1.22886 0.80631 1.03341 1.00249 1.88071 1.20461 1.27791 1.95302 1.22834 0.94521 0.84600 0.99405 1.21406 0.91160 0.97853 0.90710 1.43430 1.56365 1.07447 1.07956 1.19311 1.35669 0.82501 1.07695 0.90109 1.25999 0.93844 1.03322 0.95957 1.69909 1.32371 1.37285 1.14053 0.85258 0.78777 0.78805 0.77543 1.19857 1.20661 1.19128 1.20753 0.79360 0.86326 0.87353 1.90491 1.58799 1.15379 1.87303 1.21190 0.99560 0.99403 0.91495 0.90408 1.21484 0.92274 1.01734 1.02255 1.21384 1.02103 0.94804 0.79739 1.44132 1.17367 1.36701 1.18085 1.22316 0.91526 1.02288 0.91302 1.21941 0.97941 1.02883 1.01193 1.19627 0.97091 1.01595 0.95304 1.20580 0.94790 0.95161 0.99338 1.20940 0.96595 1.02274 0.97291 1.21084 1.00271 0.96479 0.94680 1.20254 0.93998 1.01407 1.01253 1.18612 0.93957 0.95471 0.95293 0.92951 0.94263 0.88835 0.91543 0.95101 0.88589 0.92452 0.92104 0.90662 0.92748 0.93071 0.90892 0.88002 0.79347 0.81328 0.83945 0.83470 0.84115 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.48 10.43 -148.98 -1.55 -18.04 16 3 C 0.06 2.61 6.24 71.98 0.45 3.06 16 4 C 0.11 5.42 5.30 86.38 0.46 5.88 16 5 N -0.44 -21.74 2.46 -635.52 -1.57 -23.30 16 6 C -0.32 -16.42 7.85 84.04 0.66 -15.76 16 7 H 0.08 4.08 6.53 -2.91 -0.02 4.06 16 8 C 0.01 0.55 5.11 84.93 0.43 0.99 16 9 N -0.90 -47.80 11.29 21.66 0.24 -47.55 16 10 Si 0.97 41.03 29.57 68.60 2.03 43.06 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 14 C 0.47 22.37 6.68 87.66 0.59 22.96 16 15 O -0.63 -31.85 15.86 -3.05 -0.05 -31.90 16 16 C -0.09 -3.71 2.24 -11.54 -0.03 -3.74 16 17 H 0.08 3.28 6.53 -2.39 -0.02 3.26 16 18 C -0.12 -4.38 8.96 71.98 0.64 -3.73 16 19 C 0.14 4.79 4.88 86.38 0.42 5.21 16 20 N -0.48 -14.72 2.51 -515.92 -1.30 -16.01 16 21 C 0.05 1.28 9.75 83.00 0.81 2.09 16 22 C -0.22 -5.29 11.08 23.51 0.26 -5.03 16 23 C -0.13 -3.74 6.37 -20.20 -0.13 -3.87 16 24 C -0.08 -1.92 10.05 22.23 0.22 -1.69 16 25 C -0.15 -3.41 9.97 22.03 0.22 -3.19 16 26 C -0.11 -2.68 10.01 22.29 0.22 -2.46 16 27 C -0.15 -4.56 10.00 22.37 0.22 -4.33 16 28 C 0.07 2.31 6.81 39.03 0.27 2.58 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 5.02 5.59 -2.38 -0.01 5.01 16 35 H 0.06 2.82 7.51 -2.39 -0.02 2.80 16 36 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 37 H 0.07 2.38 6.44 -2.38 -0.02 2.37 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 2.12 7.66 -2.39 -0.02 2.10 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.10 3.29 8.00 -2.38 -0.02 3.27 16 42 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 44 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 46 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 47 H 0.11 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -64.18 387.67 5.74 -58.45 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.96 Total: 34.34 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.97 Total: 0.97 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.62 Total: -86.87 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -1.60 Total: -49.94 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -64.18 5.74 -58.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.299 kcal (2) G-P(sol) polarization free energy of solvation -64.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds