Wall clock time and date at job start Tue Mar 31 2020 15:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.50708 * 109.46946 * 239.99891 * 2 1 3 5 5 H 1.08003 * 119.99596 * 245.41565 * 4 2 1 6 6 C 1.37876 * 120.00001 * 65.41721 * 4 2 1 7 7 N 1.31517 * 119.99957 * 6.45022 * 6 4 2 8 8 Si 1.86796 * 119.99878 * 186.44866 * 6 4 2 9 9 H 1.48495 * 109.47095 * 94.88108 * 8 6 4 10 10 H 1.48497 * 109.47389 * 214.88189 * 8 6 4 11 11 H 1.48507 * 109.47312 * 334.88442 * 8 6 4 12 12 N 1.46504 * 109.46902 * 120.00128 * 2 1 3 13 13 C 1.46501 * 119.99899 * 59.99715 * 12 2 1 14 14 C 1.34772 * 119.99725 * 239.99716 * 12 2 1 15 15 O 1.21577 * 120.00255 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00041 * 179.72219 * 14 12 2 17 17 C 1.39291 * 120.00382 * 174.88359 * 16 14 12 18 18 C 1.39228 * 119.89708 * 326.27546 * 17 16 14 19 19 C 1.36597 * 120.10427 * 179.75978 * 18 17 16 20 20 C 1.40072 * 119.89545 * 0.53878 * 19 18 17 21 21 C 1.46820 * 120.10380 * 179.73738 * 20 19 18 22 22 O 1.21300 * 120.00334 * 179.97438 * 21 20 19 23 23 C 1.50708 * 119.99700 * 359.97438 * 21 20 19 24 24 C 1.53788 * 113.61387 * 254.13274 * 23 21 20 25 25 C 1.53954 * 87.01978 * 220.05010 * 24 23 21 26 26 C 1.53784 * 113.61267 * 156.52789 * 23 21 20 27 27 C 1.40072 * 119.79646 * 359.72247 * 20 19 18 28 28 C 1.36601 * 119.89626 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47326 * 174.35154 * 1 2 3 30 30 H 1.08998 * 109.47233 * 294.35489 * 1 2 3 31 31 H 1.09004 * 109.47012 * 54.35425 * 1 2 3 32 32 H 0.97000 * 119.99814 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.46964 * 270.00089 * 13 12 2 34 34 H 1.08998 * 109.47017 * 30.00247 * 13 12 2 35 35 H 1.09000 * 109.46804 * 150.00467 * 13 12 2 36 36 H 0.97004 * 119.99826 * 354.88595 * 16 14 12 37 37 H 1.08001 * 119.94701 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.05698 * 180.25298 * 19 18 17 39 39 H 1.08992 * 112.84989 * 25.33288 * 23 21 20 40 40 H 1.08996 * 113.61487 * 334.57149 * 24 23 21 41 41 H 1.09002 * 113.61050 * 105.46959 * 24 23 21 42 42 H 1.08997 * 113.53719 * 270.81096 * 25 24 23 43 43 H 1.08992 * 113.66716 * 139.93329 * 25 24 23 44 44 H 1.08996 * 113.61738 * 254.53151 * 26 23 21 45 45 H 1.09001 * 113.61738 * 25.35090 * 26 23 21 46 46 H 1.07996 * 120.04780 * 179.97438 * 27 20 19 47 47 H 1.07997 * 119.94238 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5792 -1.6368 -1.1338 6 6 1.7938 -0.1779 -2.4797 7 7 1.2411 1.0100 -2.5935 8 14 2.2557 -1.1437 -4.0105 9 1 1.0729 -1.9001 -4.4941 10 1 2.7104 -0.2064 -5.0687 11 1 3.3510 -2.0925 -3.6855 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0873 1.1281 1.8907 16 7 3.2378 -0.6694 3.1866 17 6 4.1242 -0.0280 4.0486 18 6 5.0692 0.8584 3.5388 19 6 5.9373 1.4934 4.3809 20 6 5.8832 1.2431 5.7580 21 6 6.8179 1.9187 6.6665 22 8 6.7691 1.7010 7.8588 23 6 7.8379 2.8829 6.1177 24 6 9.2694 2.3211 6.0998 25 6 9.7371 3.7174 6.5489 26 6 8.3348 3.9081 7.1507 27 6 4.9344 0.3464 6.2657 28 6 4.0662 -0.2793 5.4167 29 1 -0.3634 -1.0226 -0.1011 30 1 -0.3633 0.4238 0.9362 31 1 -0.3633 0.5989 -0.8352 32 1 1.0729 1.3845 -3.4723 33 1 0.7374 -2.1443 1.9993 34 1 1.5294 -2.5969 0.4708 35 1 2.4627 -2.5819 1.9864 36 1 2.9405 -1.5722 3.3804 37 1 5.1130 1.0474 2.4764 38 1 6.6672 2.1839 3.9850 39 1 7.5322 3.3294 5.1717 40 1 9.4423 1.5427 6.8429 41 1 9.6165 2.0424 5.1048 42 1 9.9519 4.3919 5.7201 43 1 10.5324 3.6938 7.2938 44 1 7.9286 4.9087 7.0031 45 1 8.2505 3.5650 8.1819 46 1 4.8894 0.1501 7.3267 47 1 3.3341 -0.9705 5.8074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486994239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:20 Heat of formation + Delta-G solvation = -10.913682 kcal Electronic energy + Delta-G solvation = -27557.023024 eV Core-core repulsion = 23705.978000 eV Total energy + Delta-G solvation = -3851.045024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75217 -40.13446 -38.46039 -37.29268 -35.62746 -34.54840 -32.82721 -31.27681 -30.37935 -29.14387 -27.02145 -26.24737 -25.91053 -25.25564 -23.70858 -22.81214 -21.51707 -20.49075 -19.33958 -19.17627 -18.05101 -17.38438 -16.91927 -16.28460 -16.02817 -15.55821 -15.21622 -15.11206 -14.58900 -14.42333 -14.29391 -14.09031 -13.54435 -13.25814 -13.09306 -12.99587 -12.72658 -12.62133 -12.58617 -12.45911 -12.11272 -11.79861 -11.67596 -11.55533 -11.23193 -11.07837 -10.99135 -10.79755 -10.74932 -10.66061 -10.39240 -10.26046 -10.13309 -9.62402 -9.47687 -9.25630 -9.02057 -8.48692 -8.09405 -7.66949 -6.14789 -4.20822 0.63596 1.46782 2.32516 3.02987 3.22151 3.30209 3.32344 3.56313 3.92386 3.95115 4.26641 4.28549 4.40262 4.41757 4.56781 4.63657 4.80984 4.95527 5.17713 5.18286 5.27964 5.37228 5.40744 5.44059 5.49523 5.51401 5.60166 5.62203 5.67022 5.83272 5.84377 5.98171 6.13497 6.16922 6.26682 6.32014 6.39005 6.56899 6.61350 6.65664 6.88139 7.02021 7.07402 7.33157 7.49333 7.60514 7.67106 7.90724 8.10665 8.49109 8.79383 9.05790 9.45140 10.92715 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002387 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.359619 B =11729.321739 C =12603.540701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.270 3.730 3 H 0.072 0.928 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.601 5.601 13 C 0.081 3.919 14 C 0.695 3.305 15 O -0.573 6.573 16 N -0.693 5.693 17 C 0.223 3.777 18 C -0.139 4.139 19 C -0.045 4.045 20 C -0.209 4.209 21 C 0.414 3.586 22 O -0.465 6.465 23 C -0.166 4.166 24 C -0.119 4.119 25 C -0.140 4.140 26 C -0.126 4.126 27 C -0.036 4.036 28 C -0.175 4.175 29 H 0.033 0.967 30 H 0.015 0.985 31 H 0.078 0.922 32 H 0.264 0.736 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.405 0.595 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.132 0.868 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.263 -1.546 16.336 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.170 3.830 3 H 0.089 0.911 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.335 5.335 13 C -0.064 4.064 14 C 0.397 3.603 15 O -0.449 6.449 16 N -0.341 5.341 17 C 0.125 3.875 18 C -0.160 4.160 19 C -0.064 4.064 20 C -0.211 4.211 21 C 0.293 3.707 22 O -0.342 6.342 23 C -0.185 4.185 24 C -0.157 4.157 25 C -0.178 4.178 26 C -0.163 4.163 27 C -0.055 4.055 28 C -0.196 4.196 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.242 0.758 37 H 0.164 0.836 38 H 0.149 0.851 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.150 0.850 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.289 -0.705 16.516 19.472 hybrid contribution -0.206 -1.114 -1.041 1.539 sum 10.083 -1.819 15.475 18.559 Atomic orbital electron populations 1.22039 0.98402 1.00005 0.99522 1.18951 0.90394 0.94818 0.78857 0.91064 1.21276 1.36594 1.08701 0.90324 0.92181 1.24894 0.95044 0.94687 0.98974 1.69951 1.42971 1.15145 1.24124 0.86505 0.78628 0.79795 0.82608 1.20601 1.21095 1.19914 1.47647 1.50937 1.11461 1.23428 1.21599 0.98431 0.83452 1.02876 1.16005 0.79865 0.84951 0.79517 1.90902 1.62356 1.15077 1.76612 1.43023 1.47768 1.18792 1.24540 1.17896 0.87977 0.92867 0.88803 1.21067 0.94156 0.98755 1.02018 1.21070 0.96911 0.96690 0.91741 1.20325 1.01948 1.04191 0.94668 1.22120 0.81388 0.79246 0.87923 1.90475 1.67375 1.58321 1.18034 1.23139 0.95414 0.98135 1.01779 1.22806 0.92772 0.97569 1.02516 1.22852 0.97089 0.96930 1.00895 1.22856 0.95933 0.98469 0.99078 1.20841 0.92080 0.92725 0.99825 1.20582 1.02713 1.05249 0.91087 0.94740 0.96604 0.90350 0.92604 0.93688 0.89475 0.93369 0.75756 0.83614 0.85076 0.86712 0.89714 0.90480 0.89791 0.91107 0.90996 0.88948 0.85017 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.88 37.16 0.33 -2.88 16 2 C 0.27 6.62 2.50 -69.08 -0.17 6.45 16 3 H 0.07 2.05 6.87 -51.93 -0.36 1.70 16 4 C -0.53 -13.78 8.01 -34.44 -0.28 -14.05 16 5 H 0.06 1.53 7.15 -52.48 -0.38 1.15 16 6 C 0.07 1.79 5.27 -17.82 -0.09 1.69 16 7 N -0.88 -24.66 12.05 55.43 0.67 -23.99 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.60 -12.14 2.75 -181.00 -0.50 -12.64 16 13 C 0.08 1.23 9.25 59.85 0.55 1.78 16 14 C 0.69 13.91 8.00 -86.92 -0.70 13.21 16 15 O -0.57 -13.63 13.36 5.30 0.07 -13.56 16 16 N -0.69 -10.48 5.14 -14.22 -0.07 -10.55 16 17 C 0.22 3.27 6.27 -83.74 -0.53 2.74 16 18 C -0.14 -2.13 8.58 -39.81 -0.34 -2.47 16 19 C -0.05 -0.57 9.36 -39.49 -0.37 -0.94 16 20 C -0.21 -2.62 5.87 -105.05 -0.62 -3.24 16 21 C 0.41 4.96 6.53 -30.84 -0.20 4.76 16 22 O -0.47 -6.62 16.02 5.54 0.09 -6.53 16 23 C -0.17 -1.54 3.58 -90.95 -0.33 -1.86 16 24 C -0.12 -0.95 7.64 -25.82 -0.20 -1.15 16 25 C -0.14 -0.99 8.09 -25.82 -0.21 -1.20 16 26 C -0.13 -1.08 7.54 -25.91 -0.20 -1.28 16 27 C -0.04 -0.44 9.55 -39.49 -0.38 -0.82 16 28 C -0.18 -2.13 9.90 -39.81 -0.39 -2.52 16 29 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 1.95 6.91 -51.93 -0.36 1.59 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.42 6.92 -51.93 -0.36 1.06 16 35 H 0.05 0.58 6.46 -51.93 -0.34 0.24 16 36 H 0.41 4.77 6.63 -40.82 -0.27 4.50 16 37 H 0.15 2.57 6.42 -52.49 -0.34 2.24 16 38 H 0.13 1.32 6.29 -52.49 -0.33 0.99 16 39 H 0.11 0.93 6.46 -51.93 -0.34 0.60 16 40 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.90 7.37 -51.93 -0.38 0.51 16 46 H 0.13 1.47 7.64 -52.49 -0.40 1.07 16 47 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -31.59 381.28 -9.89 -41.48 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.77 Total: 6.41 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.11 Total: -1.78 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.10 Total: -47.19 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.16 Total: -20.10 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.59 -9.89 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486994239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.565 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds