Wall clock time and date at job start Tue Mar 31 2020 15:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.50708 * 109.46946 * 239.99891 * 2 1 3 5 5 H 1.08003 * 119.99596 * 245.41565 * 4 2 1 6 6 C 1.37876 * 120.00001 * 65.41721 * 4 2 1 7 7 N 1.31517 * 119.99957 * 6.45022 * 6 4 2 8 8 Si 1.86796 * 119.99878 * 186.44866 * 6 4 2 9 9 H 1.48495 * 109.47095 * 94.88108 * 8 6 4 10 10 H 1.48497 * 109.47389 * 214.88189 * 8 6 4 11 11 H 1.48507 * 109.47312 * 334.88442 * 8 6 4 12 12 N 1.46504 * 109.46902 * 120.00128 * 2 1 3 13 13 C 1.46501 * 119.99899 * 59.99715 * 12 2 1 14 14 C 1.34772 * 119.99725 * 239.99716 * 12 2 1 15 15 O 1.21577 * 120.00255 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00041 * 179.72219 * 14 12 2 17 17 C 1.39291 * 120.00382 * 174.88359 * 16 14 12 18 18 C 1.39228 * 119.89708 * 326.27546 * 17 16 14 19 19 C 1.36597 * 120.10427 * 179.75978 * 18 17 16 20 20 C 1.40072 * 119.89545 * 0.53878 * 19 18 17 21 21 C 1.46820 * 120.10380 * 179.73738 * 20 19 18 22 22 O 1.21300 * 120.00334 * 179.97438 * 21 20 19 23 23 C 1.50708 * 119.99700 * 359.97438 * 21 20 19 24 24 C 1.53788 * 113.61387 * 254.13274 * 23 21 20 25 25 C 1.53954 * 87.01978 * 220.05010 * 24 23 21 26 26 C 1.53784 * 113.61267 * 156.52789 * 23 21 20 27 27 C 1.40072 * 119.79646 * 359.72247 * 20 19 18 28 28 C 1.36601 * 119.89626 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47326 * 174.35154 * 1 2 3 30 30 H 1.08998 * 109.47233 * 294.35489 * 1 2 3 31 31 H 1.09004 * 109.47012 * 54.35425 * 1 2 3 32 32 H 0.97000 * 119.99814 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.46964 * 270.00089 * 13 12 2 34 34 H 1.08998 * 109.47017 * 30.00247 * 13 12 2 35 35 H 1.09000 * 109.46804 * 150.00467 * 13 12 2 36 36 H 0.97004 * 119.99826 * 354.88595 * 16 14 12 37 37 H 1.08001 * 119.94701 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.05698 * 180.25298 * 19 18 17 39 39 H 1.08992 * 112.84989 * 25.33288 * 23 21 20 40 40 H 1.08996 * 113.61487 * 334.57149 * 24 23 21 41 41 H 1.09002 * 113.61050 * 105.46959 * 24 23 21 42 42 H 1.08997 * 113.53719 * 270.81096 * 25 24 23 43 43 H 1.08992 * 113.66716 * 139.93329 * 25 24 23 44 44 H 1.08996 * 113.61738 * 254.53151 * 26 23 21 45 45 H 1.09001 * 113.61738 * 25.35090 * 26 23 21 46 46 H 1.07996 * 120.04780 * 179.97438 * 27 20 19 47 47 H 1.07997 * 119.94238 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5792 -1.6368 -1.1338 6 6 1.7938 -0.1779 -2.4797 7 7 1.2411 1.0100 -2.5935 8 14 2.2557 -1.1437 -4.0105 9 1 1.0729 -1.9001 -4.4941 10 1 2.7104 -0.2064 -5.0687 11 1 3.3510 -2.0925 -3.6855 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0873 1.1281 1.8907 16 7 3.2378 -0.6694 3.1866 17 6 4.1242 -0.0280 4.0486 18 6 5.0692 0.8584 3.5388 19 6 5.9373 1.4934 4.3809 20 6 5.8832 1.2431 5.7580 21 6 6.8179 1.9187 6.6665 22 8 6.7691 1.7010 7.8588 23 6 7.8379 2.8829 6.1177 24 6 9.2694 2.3211 6.0998 25 6 9.7371 3.7174 6.5489 26 6 8.3348 3.9081 7.1507 27 6 4.9344 0.3464 6.2657 28 6 4.0662 -0.2793 5.4167 29 1 -0.3634 -1.0226 -0.1011 30 1 -0.3633 0.4238 0.9362 31 1 -0.3633 0.5989 -0.8352 32 1 1.0729 1.3845 -3.4723 33 1 0.7374 -2.1443 1.9993 34 1 1.5294 -2.5969 0.4708 35 1 2.4627 -2.5819 1.9864 36 1 2.9405 -1.5722 3.3804 37 1 5.1130 1.0474 2.4764 38 1 6.6672 2.1839 3.9850 39 1 7.5322 3.3294 5.1717 40 1 9.4423 1.5427 6.8429 41 1 9.6165 2.0424 5.1048 42 1 9.9519 4.3919 5.7201 43 1 10.5324 3.6938 7.2938 44 1 7.9286 4.9087 7.0031 45 1 8.2505 3.5650 8.1819 46 1 4.8894 0.1501 7.3267 47 1 3.3341 -0.9705 5.8074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486994239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:19 Heat of formation + Delta-G solvation = -27.988399 kcal Electronic energy + Delta-G solvation = -27557.763439 eV Core-core repulsion = 23705.978000 eV Total energy + Delta-G solvation = -3851.785440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92333 -41.24724 -39.59534 -38.17420 -37.25147 -35.94970 -34.66258 -32.32482 -31.82361 -30.60073 -27.95441 -27.53989 -27.25604 -26.55766 -24.85466 -23.88935 -22.98844 -21.47415 -20.77239 -20.03400 -19.34762 -18.66341 -18.31070 -17.86054 -17.18493 -16.83881 -16.43731 -16.26992 -16.01706 -15.58904 -15.42892 -15.21014 -14.91628 -14.59339 -14.37913 -14.16543 -13.91109 -13.67601 -13.64607 -13.57107 -13.39000 -13.09080 -12.89709 -12.85983 -12.76495 -12.62020 -12.29086 -12.27050 -12.23234 -12.08609 -11.46798 -11.37843 -11.29394 -11.23098 -11.04042 -10.52397 -10.48096 -10.07817 -9.51496 -9.05211 -8.15879 -6.29676 -0.41027 0.43647 1.29457 1.42722 1.43596 1.53418 1.68324 2.13793 2.42482 2.84061 3.00648 3.06655 3.14822 3.59024 3.72475 3.78221 3.91276 3.92492 4.03757 4.26027 4.28293 4.32818 4.48816 4.52040 4.67624 4.71808 4.75274 4.79517 4.85141 4.85322 4.95125 5.01325 5.01998 5.03711 5.08318 5.12702 5.19875 5.25785 5.35800 5.43775 5.46893 5.49578 5.52570 5.66218 5.90572 5.94173 6.09397 6.21425 6.54407 6.78919 7.01117 7.36290 7.56634 8.91011 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002387 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.359619 B =11729.321739 C =12603.540701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.275 3.725 3 H 0.016 0.984 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.609 5.609 13 C 0.075 3.925 14 C 0.691 3.309 15 O -0.621 6.621 16 N -0.673 5.673 17 C 0.200 3.800 18 C -0.161 4.161 19 C -0.039 4.039 20 C -0.212 4.212 21 C 0.415 3.585 22 O -0.490 6.490 23 C -0.170 4.170 24 C -0.118 4.118 25 C -0.131 4.131 26 C -0.130 4.130 27 C -0.040 4.040 28 C -0.159 4.159 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.423 0.577 37 H 0.114 0.886 38 H 0.153 0.847 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.146 0.854 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -3.238 17.455 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.173 3.827 3 H 0.034 0.966 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.192 1.192 12 N -0.342 5.342 13 C -0.067 4.067 14 C 0.393 3.607 15 O -0.501 6.501 16 N -0.323 5.323 17 C 0.102 3.898 18 C -0.181 4.181 19 C -0.057 4.057 20 C -0.214 4.214 21 C 0.297 3.703 22 O -0.368 6.368 23 C -0.189 4.189 24 C -0.156 4.156 25 C -0.168 4.168 26 C -0.167 4.167 27 C -0.059 4.059 28 C -0.179 4.179 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.264 0.736 37 H 0.132 0.868 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.163 0.837 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.078 -2.462 17.683 21.011 hybrid contribution -0.394 -0.557 -1.267 1.439 sum 10.684 -3.019 16.416 19.818 Atomic orbital electron populations 1.21821 0.97117 1.00613 0.98904 1.18513 0.91274 0.92433 0.80474 0.96555 1.21565 1.36264 1.08675 0.91066 0.91786 1.25731 0.95108 0.95458 1.02085 1.70095 1.44314 1.16731 1.24691 0.85470 0.78700 0.78345 0.78653 1.19452 1.21483 1.19194 1.47490 1.51084 1.13299 1.22371 1.21871 1.01028 0.80481 1.03324 1.16149 0.79610 0.84516 0.80432 1.90870 1.63918 1.17422 1.77882 1.42619 1.47360 1.19299 1.23034 1.18107 0.88211 0.93706 0.89739 1.20963 0.95919 1.00352 1.00903 1.21202 0.96597 0.96381 0.91556 1.20559 1.02079 1.04065 0.94651 1.22442 0.81371 0.79131 0.87390 1.90468 1.68114 1.59284 1.18967 1.23270 0.95266 0.97940 1.02425 1.22831 0.91692 0.97985 1.03067 1.22846 0.96294 0.96341 1.01310 1.22869 0.97187 0.98514 0.98155 1.21113 0.91804 0.92400 1.00588 1.20795 1.02695 1.04861 0.89570 0.92866 0.95540 0.93046 0.92690 0.91150 0.90480 0.89814 0.73649 0.86764 0.82932 0.85431 0.90514 0.89239 0.88392 0.90359 0.90252 0.90369 0.83667 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.88 71.98 0.64 -5.14 16 2 C 0.28 13.87 2.50 44.25 0.11 13.98 16 3 H 0.02 1.01 6.87 -2.39 -0.02 0.99 16 4 C -0.54 -28.23 8.01 25.60 0.21 -28.03 16 5 H 0.06 3.24 7.15 -2.91 -0.02 3.22 16 6 C 0.02 0.86 5.27 84.65 0.45 1.31 16 7 N -0.92 -52.84 12.05 21.45 0.26 -52.58 16 8 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 N -0.61 -24.55 2.75 -844.83 -2.33 -26.88 16 13 C 0.08 2.12 9.25 127.77 1.18 3.30 16 14 C 0.69 28.00 8.00 179.06 1.43 29.43 16 15 O -0.62 -31.02 13.36 -3.96 -0.05 -31.07 16 16 N -0.67 -19.63 5.14 -317.15 -1.63 -21.26 16 17 C 0.20 5.68 6.27 38.43 0.24 5.92 16 18 C -0.16 -4.98 8.58 22.12 0.19 -4.79 16 19 C -0.04 -0.96 9.36 22.33 0.21 -0.75 16 20 C -0.21 -5.05 5.87 -20.14 -0.12 -5.16 16 21 C 0.42 9.50 6.53 27.94 0.18 9.68 16 22 O -0.49 -13.53 16.02 -3.09 -0.05 -13.58 16 23 C -0.17 -2.90 3.58 -11.01 -0.04 -2.94 16 24 C -0.12 -1.68 7.64 31.18 0.24 -1.44 16 25 C -0.13 -1.57 8.09 31.18 0.25 -1.32 16 26 C -0.13 -2.05 7.54 31.12 0.23 -1.82 16 27 C -0.04 -0.91 9.55 22.33 0.21 -0.70 16 28 C -0.16 -3.50 9.90 22.12 0.22 -3.28 16 29 H 0.05 2.19 7.86 -2.39 -0.02 2.17 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 2.63 6.91 -2.38 -0.02 2.61 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.08 2.36 6.92 -2.39 -0.02 2.34 16 35 H 0.08 1.74 6.46 -2.39 -0.02 1.72 16 36 H 0.42 8.84 6.63 -92.71 -0.61 8.22 16 37 H 0.11 4.30 6.42 -2.91 -0.02 4.28 16 38 H 0.15 2.94 6.29 -2.91 -0.02 2.92 16 39 H 0.13 1.83 6.46 -2.39 -0.02 1.82 16 40 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 1.47 7.37 -2.39 -0.02 1.45 16 46 H 0.15 2.92 7.64 -2.91 -0.02 2.90 16 47 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -72.04 381.28 4.44 -67.60 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.38 Total: 25.41 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.84 Total: 8.26 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.70 Total: -100.72 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.10 Total: -44.66 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -72.04 4.44 -67.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486994239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.609 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds