Wall clock time and date at job start Tue Mar 31 2020 16:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47340 * 2 1 4 4 N 1.46495 * 109.47075 * 239.99686 * 2 1 3 5 5 C 1.34781 * 120.00088 * 85.00083 * 4 2 1 6 6 O 1.21695 * 119.99810 * 0.02562 * 5 4 2 7 7 C 1.46425 * 120.00190 * 179.97438 * 5 4 2 8 8 C 1.34808 * 120.00246 * 173.21875 * 7 5 4 9 9 C 1.47209 * 119.99731 * 349.04301 * 8 7 5 10 10 C 1.39836 * 120.17011 * 316.11051 * 9 8 7 11 11 C 1.37900 * 119.82421 * 179.74761 * 10 9 8 12 12 C 1.38398 * 120.16962 * 0.54562 * 11 10 9 13 13 C 1.38403 * 120.34472 * 359.70581 * 12 11 10 14 14 C 1.37890 * 120.17522 * 0.02562 * 13 12 11 15 15 C 1.50704 * 109.46875 * 119.99948 * 2 1 3 16 16 O 1.21279 * 119.99755 * 119.99708 * 15 2 1 17 17 N 1.34775 * 119.99835 * 299.99996 * 15 2 1 18 18 C 1.46498 * 119.99683 * 180.02562 * 17 15 2 19 19 C 1.53002 * 109.46993 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.46917 * 179.97438 * 19 18 17 21 21 C 1.50704 * 109.46910 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00268 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99890 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00033 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99807 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47484 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47238 * 120.00186 * 25 23 21 28 28 H 1.48505 * 109.47186 * 239.99816 * 25 23 21 29 29 H 1.09005 * 109.46787 * 59.99826 * 1 2 3 30 30 H 1.09002 * 109.47082 * 300.00506 * 1 2 3 31 31 H 1.09001 * 109.47340 * 179.97438 * 1 2 3 32 32 H 0.97005 * 120.00624 * 265.00512 * 4 2 1 33 33 H 1.08004 * 120.00180 * 353.22552 * 7 5 4 34 34 H 1.07992 * 120.00229 * 169.04459 * 8 7 5 35 35 H 1.07998 * 120.08777 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.91157 * 180.27014 * 11 10 9 37 37 H 1.08001 * 119.82569 * 179.71704 * 12 11 10 38 38 H 1.08004 * 119.91191 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.09099 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00436 * 359.97438 * 17 15 2 41 41 H 1.09001 * 109.46870 * 299.99598 * 18 17 15 42 42 H 1.08999 * 109.47452 * 59.99266 * 18 17 15 43 43 H 1.08992 * 109.47154 * 299.99920 * 19 18 17 44 44 H 1.09004 * 109.46991 * 59.99794 * 19 18 17 45 45 H 1.08997 * 109.48059 * 300.00089 * 20 19 18 46 46 H 1.09004 * 109.47004 * 60.00358 * 20 19 18 47 47 H 0.97001 * 119.99481 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8581 1.1625 -2.4117 7 6 2.6357 -0.7085 -3.5525 8 6 2.6357 -0.0764 -4.7432 9 6 1.9297 1.2064 -4.8954 10 6 0.6536 1.3755 -4.3492 11 6 0.0010 2.5819 -4.4915 12 6 0.6011 3.6200 -5.1826 13 6 1.8617 3.4587 -5.7306 14 6 2.5295 2.2602 -5.5921 15 6 2.0323 -0.7104 1.2305 16 8 2.7295 -1.6965 1.1192 17 7 1.7067 -0.2499 2.4546 18 6 2.1954 -0.9402 3.6507 19 6 1.6858 -0.2186 4.9000 20 6 2.1957 -0.9400 6.1492 21 6 1.6943 -0.2288 7.3797 22 1 1.0736 0.6494 7.2806 23 6 2.0279 -0.6995 8.6320 24 7 2.7833 -1.7693 8.7527 25 14 1.4058 0.1815 10.1571 26 1 0.5810 1.3484 9.7530 27 1 0.5811 -0.7517 10.9661 28 1 2.5611 0.6485 10.9649 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6319 -1.1526 33 1 2.9960 -1.7241 -3.4804 34 1 3.1535 -0.5110 -5.5854 35 1 0.1823 0.5649 -3.8133 36 1 -0.9828 2.7155 -4.0664 37 1 0.0830 4.5610 -5.2947 38 1 2.3236 4.2736 -6.2682 39 1 3.5133 2.1359 -6.0199 40 1 1.1493 0.5389 2.5436 41 1 1.8324 -1.9680 3.6509 42 1 3.2854 -0.9399 3.6506 43 1 2.0491 0.8090 4.8996 44 1 0.5957 -0.2186 4.9003 45 1 1.8321 -1.9675 6.1495 46 1 3.2858 -0.9403 6.1490 47 1 3.0176 -2.1006 9.6337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491492571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:49 Heat of formation + Delta-G solvation = -38.065134 kcal Electronic energy + Delta-G solvation = -26591.545151 eV Core-core repulsion = 22739.322751 eV Total energy + Delta-G solvation = -3852.222400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.66555 -39.69276 -38.65164 -35.73273 -35.14818 -34.06273 -33.43969 -31.78739 -31.08513 -30.75038 -29.49335 -26.87444 -25.26725 -23.98336 -22.86658 -22.60522 -21.64880 -20.77973 -20.18459 -19.64829 -18.07234 -17.08737 -16.81557 -16.33577 -16.16651 -15.70638 -15.36141 -15.24808 -14.91101 -14.74385 -14.47322 -14.32631 -14.07700 -13.77287 -13.56963 -13.51366 -13.05692 -12.86643 -12.59674 -12.50788 -12.33118 -11.93639 -11.87084 -11.70768 -11.41615 -11.32727 -10.95021 -10.78985 -10.60727 -10.35676 -10.05208 -10.01383 -9.92532 -9.52599 -9.33984 -9.13875 -8.93565 -8.90215 -8.40717 -8.37480 -6.05152 -4.08286 0.43165 1.31153 1.62680 2.55758 2.73402 3.06684 3.27902 3.35460 3.38081 3.40881 3.69238 4.38092 4.41381 4.46288 4.60891 4.73924 4.78578 4.82289 4.91271 4.92418 5.02105 5.24836 5.30849 5.31353 5.37590 5.49165 5.63391 5.67381 5.70191 5.72254 5.84751 5.86934 5.91240 6.08744 6.13462 6.29655 6.34775 6.35256 6.40001 6.53149 6.74213 6.82639 6.94109 7.29892 7.52461 7.59637 7.71283 7.93312 8.01052 8.17289 8.34463 8.98525 9.56204 11.06110 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025418 B = 0.001713 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.295771 B =16343.250985 C =17003.296881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.114 0.886 4 N -0.707 5.707 5 C 0.541 3.459 6 O -0.528 6.528 7 C -0.211 4.211 8 C -0.021 4.021 9 C -0.074 4.074 10 C -0.036 4.036 11 C -0.132 4.132 12 C -0.109 4.109 13 C -0.135 4.135 14 C -0.100 4.100 15 C 0.505 3.495 16 O -0.542 6.542 17 N -0.718 5.718 18 C 0.116 3.884 19 C -0.121 4.121 20 C 0.023 3.977 21 C -0.522 4.522 22 H 0.056 0.944 23 C 0.056 3.944 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 5.517 -31.420 32.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.132 0.868 4 N -0.360 5.360 5 C 0.330 3.670 6 O -0.406 6.406 7 C -0.232 4.232 8 C -0.041 4.041 9 C -0.074 4.074 10 C -0.054 4.054 11 C -0.150 4.150 12 C -0.127 4.127 13 C -0.153 4.153 14 C -0.118 4.118 15 C 0.290 3.710 16 O -0.419 6.419 17 N -0.369 5.369 18 C -0.006 4.006 19 C -0.159 4.159 20 C -0.014 4.014 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.532 5.532 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.247 0.753 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.826 5.515 -31.347 32.058 hybrid contribution -0.290 0.262 1.231 1.292 sum -4.116 5.778 -30.116 30.940 Atomic orbital electron populations 1.22123 0.92785 1.03167 1.03580 1.20760 0.95660 0.98172 0.83792 0.86844 1.45749 1.66922 1.14755 1.08539 1.18469 0.77767 0.87043 0.83687 1.90904 1.49725 1.15351 1.84625 1.22955 1.06556 1.00991 0.92663 1.22419 0.92515 0.92460 0.96702 1.18871 0.94895 0.93923 0.99748 1.21025 0.93401 0.97246 0.93734 1.20951 1.00250 0.93564 1.00275 1.21186 0.95387 0.98572 0.97524 1.20947 0.95503 0.97419 1.01473 1.21160 0.99269 0.93077 0.98265 1.20530 0.80616 0.84897 0.84981 1.90696 1.38132 1.26461 1.86652 1.46155 1.52929 1.31943 1.05839 1.21703 0.99377 0.96574 0.82988 1.21900 1.00271 0.99575 0.94187 1.19038 0.96703 0.95693 0.90003 1.21238 1.31638 1.12316 0.90889 0.92558 1.25037 0.95156 0.95068 0.99246 1.69976 1.36806 1.22951 1.23497 0.86520 0.78641 0.79660 0.83066 1.19749 1.20987 1.20992 0.90924 0.90769 0.91715 0.75314 0.84680 0.84540 0.87005 0.86390 0.86479 0.86335 0.86272 0.76503 0.91563 0.91617 0.92623 0.92621 0.96246 0.96259 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.38 37.16 0.35 -1.03 16 2 C 0.12 1.33 2.98 -69.08 -0.21 1.13 16 3 H 0.11 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.71 -7.23 4.95 -56.33 -0.28 -7.51 16 5 C 0.54 5.70 6.76 -12.96 -0.09 5.61 16 6 O -0.53 -6.83 11.82 5.19 0.06 -6.77 16 7 C -0.21 -1.65 9.91 -37.50 -0.37 -2.02 16 8 C -0.02 -0.16 9.81 -37.16 -0.36 -0.52 16 9 C -0.07 -0.70 4.53 -105.06 -0.48 -1.18 16 10 C -0.04 -0.36 6.60 -39.11 -0.26 -0.62 16 11 C -0.13 -1.25 10.03 -39.65 -0.40 -1.65 16 12 C -0.11 -0.95 10.04 -39.46 -0.40 -1.35 16 13 C -0.14 -1.16 10.03 -39.65 -0.40 -1.56 16 14 C -0.10 -0.88 9.80 -39.11 -0.38 -1.26 16 15 C 0.51 6.85 7.22 -10.98 -0.08 6.77 16 16 O -0.54 -9.17 15.84 5.56 0.09 -9.08 16 17 N -0.72 -9.54 5.45 -60.29 -0.33 -9.87 16 18 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 19 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 20 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 21 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 22 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 23 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 24 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 25 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.41 3.97 7.77 -40.82 -0.32 3.66 16 33 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.11 1.09 7.03 -52.49 -0.37 0.72 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.40 4.26 7.89 -40.82 -0.32 3.93 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -33.87 397.14 -9.80 -43.67 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.26 Total: 4.08 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.78 Total: -10.99 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.13 Total: -43.20 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.15 Total: -15.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.87 -9.80 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.605 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds