Wall clock time and date at job start Tue Mar 31 2020 16:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 5 5 C 1.34770 * 120.00092 * 274.99977 * 4 2 1 6 6 O 1.21702 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.46431 * 120.00085 * 179.97438 * 5 4 2 8 8 C 1.34804 * 120.00088 * 180.02562 * 7 5 4 9 9 C 1.47212 * 119.99987 * 179.97438 * 8 7 5 10 10 C 1.39834 * 120.16829 * 359.72262 * 9 8 7 11 11 C 1.37896 * 119.82281 * 179.72023 * 10 9 8 12 12 C 1.38400 * 120.16926 * 0.58418 * 11 10 9 13 13 C 1.38399 * 120.34826 * 359.69125 * 12 11 10 14 14 C 1.37897 * 120.16777 * 0.02562 * 13 12 11 15 15 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 16 16 O 1.21283 * 120.00472 * 240.00297 * 15 2 1 17 17 N 1.34777 * 119.99538 * 59.99635 * 15 2 1 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 2 19 19 C 1.53004 * 109.47198 * 180.27868 * 18 17 15 20 20 C 1.52997 * 109.47000 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.46940 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00043 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00213 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00116 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00201 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47136 * 90.00100 * 25 23 21 27 27 H 1.48499 * 109.47548 * 209.99879 * 25 23 21 28 28 H 1.48499 * 109.47078 * 330.00388 * 25 23 21 29 29 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 30 30 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 31 31 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99554 * 95.00338 * 4 2 1 33 33 H 1.07995 * 119.99578 * 359.97438 * 7 5 4 34 34 H 1.08001 * 120.00115 * 0.02562 * 8 7 5 35 35 H 1.08002 * 120.08484 * 0.02562 * 10 9 8 36 36 H 1.07995 * 119.91226 * 180.29588 * 11 10 9 37 37 H 1.07999 * 119.82379 * 179.71837 * 12 11 10 38 38 H 1.07999 * 119.91540 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.08350 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00485 * 0.02562 * 17 15 2 41 41 H 1.09009 * 109.47454 * 300.27637 * 18 17 15 42 42 H 1.08998 * 109.47492 * 60.27932 * 18 17 15 43 43 H 1.08995 * 109.46638 * 300.00121 * 19 18 17 44 44 H 1.09006 * 109.47139 * 60.00254 * 19 18 17 45 45 H 1.08995 * 109.47672 * 299.99669 * 20 19 18 46 46 H 1.09007 * 109.47288 * 60.00489 * 20 19 18 47 47 H 0.97000 * 120.00572 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8572 1.1626 2.4118 7 6 2.6346 -0.7085 3.5530 8 6 2.7629 -0.0360 4.7142 9 6 3.2525 -0.7302 5.9165 10 6 3.5801 -2.0884 5.8594 11 6 4.0436 -2.7302 6.9885 12 6 4.1734 -2.0364 8.1790 13 6 3.8458 -0.6934 8.2450 14 6 3.3865 -0.0362 7.1231 15 6 2.0324 -0.7105 -1.2304 16 8 2.7296 -1.6966 -1.1191 17 7 1.7067 -0.2501 -2.4545 18 6 2.2000 -0.9372 -3.6506 19 6 1.6946 -0.2128 -4.8999 20 6 2.2104 -0.9301 -6.1490 21 6 1.7121 -0.2169 -7.3795 22 1 1.0901 0.6604 -7.2805 23 6 2.0502 -0.6844 -8.6318 24 7 2.8071 -1.7531 -8.7524 25 14 1.4330 0.2000 -10.1570 26 1 2.4123 1.2431 -10.5546 27 1 1.2727 -0.7762 -11.2645 28 1 0.1235 0.8362 -9.8645 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 2.8907 -1.7565 3.5047 34 1 2.5057 1.0118 4.7628 35 1 3.4750 -2.6321 4.9321 36 1 4.3015 -3.7780 6.9447 37 1 4.5326 -2.5457 9.0610 38 1 3.9502 -0.1587 9.1775 39 1 3.1316 1.0120 7.1760 40 1 1.1493 0.5388 -2.5436 41 1 3.2901 -0.9367 -3.6464 42 1 1.8372 -1.9650 -3.6549 43 1 0.6047 -0.2133 -4.9041 44 1 2.0576 0.8151 -4.8957 45 1 3.3003 -0.9292 -6.1446 46 1 1.8478 -1.9581 -6.1535 47 1 3.0447 -2.0823 -9.6334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491492573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:59 Heat of formation + Delta-G solvation = -52.451092 kcal Electronic energy + Delta-G solvation = -25646.362649 eV Core-core repulsion = 21793.516427 eV Total energy + Delta-G solvation = -3852.846222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52281 -39.69755 -39.10350 -35.72594 -35.13275 -34.41655 -33.43434 -31.79200 -31.47689 -30.76467 -29.64721 -26.86820 -25.35034 -24.17187 -23.15848 -22.76187 -21.40959 -20.77015 -20.20039 -19.64395 -18.14146 -17.47818 -16.82240 -16.31676 -16.25926 -15.73835 -15.50821 -15.45699 -14.99221 -14.85633 -14.48220 -14.24699 -14.17488 -13.85751 -13.78845 -13.55457 -13.43567 -12.82163 -12.59837 -12.52016 -12.31937 -11.93456 -11.87182 -11.73664 -11.70794 -11.41057 -10.92828 -10.78733 -10.78034 -10.62717 -10.25850 -10.01767 -9.91634 -9.52699 -9.45195 -9.33485 -9.14440 -8.91374 -8.70162 -8.39799 -6.04404 -4.07700 0.10864 0.92225 1.59291 2.55589 2.70167 2.99440 3.29362 3.35621 3.37022 3.39714 3.45688 4.19784 4.29677 4.42074 4.46953 4.53896 4.59736 4.76298 4.80074 4.85996 4.92694 4.93497 5.03294 5.31571 5.33203 5.43528 5.49417 5.51188 5.63849 5.65962 5.70748 5.79467 5.87334 6.00491 6.01538 6.09250 6.10852 6.19846 6.35423 6.46284 6.53681 6.74634 6.94622 7.26593 7.52426 7.59953 7.71879 7.93837 7.95636 8.17259 8.35025 8.98876 9.56817 11.06836 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.001421 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.736150 B =19705.997432 C =20212.886664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.115 0.885 4 N -0.706 5.706 5 C 0.551 3.449 6 O -0.547 6.547 7 C -0.206 4.206 8 C -0.021 4.021 9 C -0.075 4.075 10 C -0.102 4.102 11 C -0.122 4.122 12 C -0.111 4.111 13 C -0.124 4.124 14 C -0.096 4.096 15 C 0.506 3.494 16 O -0.542 6.542 17 N -0.718 5.718 18 C 0.116 3.884 19 C -0.122 4.122 20 C 0.024 3.976 21 C -0.523 4.523 22 H 0.056 0.944 23 C 0.058 3.942 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 1.010 34.112 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.132 0.868 4 N -0.359 5.359 5 C 0.340 3.660 6 O -0.427 6.427 7 C -0.227 4.227 8 C -0.041 4.041 9 C -0.075 4.075 10 C -0.119 4.119 11 C -0.140 4.140 12 C -0.129 4.129 13 C -0.142 4.142 14 C -0.114 4.114 15 C 0.290 3.710 16 O -0.419 6.419 17 N -0.368 5.368 18 C -0.006 4.006 19 C -0.160 4.160 20 C -0.014 4.014 21 C -0.562 4.562 22 H 0.074 0.926 23 C -0.144 4.144 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.628 0.996 34.036 34.057 hybrid contribution -0.371 0.263 -1.082 1.174 sum -0.999 1.259 32.954 32.993 Atomic orbital electron populations 1.22131 0.92677 1.03269 1.03681 1.20794 0.95786 0.98184 0.83723 0.86753 1.45633 1.66936 1.14880 1.08415 1.18288 0.77638 0.86583 0.83463 1.90815 1.50845 1.15653 1.85342 1.22890 1.05741 1.01065 0.92991 1.22372 0.91393 0.99816 0.90530 1.19059 1.01159 0.93802 0.93495 1.21489 0.97748 0.93775 0.98926 1.21146 0.99726 1.00282 0.92843 1.21343 0.98909 0.94618 0.98001 1.21136 0.99585 0.94883 0.98552 1.21412 0.98051 1.00004 0.91934 1.20505 0.80613 0.84902 0.84961 1.90697 1.38136 1.26435 1.86647 1.46153 1.52816 1.32054 1.05818 1.21708 0.99334 0.96634 0.82973 1.21904 1.00306 0.99560 0.94184 1.19031 0.96659 0.95719 0.89985 1.21200 1.31672 1.12395 0.90913 0.92617 1.25022 0.95138 0.95030 0.99205 1.69961 1.36673 1.23013 1.23608 0.86581 0.79216 0.79419 0.82700 1.20643 1.21192 1.19876 0.90824 0.90682 0.91654 0.75159 0.85119 0.84508 0.85324 0.85605 0.85852 0.85655 0.85382 0.76474 0.91597 0.91550 0.92602 0.92618 0.96264 0.96252 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.38 37.16 0.35 -1.09 16 2 C 0.12 1.35 2.98 -69.08 -0.21 1.15 16 3 H 0.11 1.27 7.58 -51.93 -0.39 0.87 16 4 N -0.71 -7.50 4.95 -56.32 -0.28 -7.77 16 5 C 0.55 6.14 7.71 -12.97 -0.10 6.04 16 6 O -0.55 -7.67 15.89 5.19 0.08 -7.58 16 7 C -0.21 -1.75 9.41 -37.50 -0.35 -2.11 16 8 C -0.02 -0.17 9.46 -37.16 -0.35 -0.53 16 9 C -0.08 -0.56 5.87 -105.06 -0.62 -1.18 16 10 C -0.10 -0.68 9.41 -39.11 -0.37 -1.05 16 11 C -0.12 -0.72 10.03 -39.65 -0.40 -1.12 16 12 C -0.11 -0.61 10.04 -39.46 -0.40 -1.01 16 13 C -0.12 -0.70 10.03 -39.65 -0.40 -1.10 16 14 C -0.10 -0.62 9.80 -39.11 -0.38 -1.01 16 15 C 0.51 6.88 7.22 -10.99 -0.08 6.81 16 16 O -0.54 -9.16 15.84 5.55 0.09 -9.08 16 17 N -0.72 -9.53 5.45 -60.29 -0.33 -9.86 16 18 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 19 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 20 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 21 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 22 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 25 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.41 4.06 7.77 -40.82 -0.32 3.74 16 33 H 0.13 0.82 6.07 -52.49 -0.32 0.51 16 34 H 0.14 1.15 7.52 -52.49 -0.39 0.75 16 35 H 0.13 0.69 6.17 -52.49 -0.32 0.36 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.40 4.25 7.89 -40.82 -0.32 3.92 16 41 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -34.04 402.08 -9.75 -43.80 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.08 Total: 3.46 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -4.01 Total: -9.48 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.13 Total: -43.46 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.17 Total: -16.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.04 -9.75 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.655 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds