Wall clock time and date at job start Tue Mar 31 2020 16:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 5 5 C 1.34770 * 120.00092 * 274.99977 * 4 2 1 6 6 O 1.21702 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.46431 * 120.00085 * 179.97438 * 5 4 2 8 8 C 1.34804 * 120.00088 * 180.02562 * 7 5 4 9 9 C 1.47212 * 119.99987 * 179.97438 * 8 7 5 10 10 C 1.39834 * 120.16829 * 359.72262 * 9 8 7 11 11 C 1.37896 * 119.82281 * 179.72023 * 10 9 8 12 12 C 1.38400 * 120.16926 * 0.58418 * 11 10 9 13 13 C 1.38399 * 120.34826 * 359.69125 * 12 11 10 14 14 C 1.37897 * 120.16777 * 0.02562 * 13 12 11 15 15 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 16 16 O 1.21283 * 120.00472 * 240.00297 * 15 2 1 17 17 N 1.34777 * 119.99538 * 59.99635 * 15 2 1 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 2 19 19 C 1.53004 * 109.47198 * 180.27868 * 18 17 15 20 20 C 1.52997 * 109.47000 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.46940 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00043 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00213 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00116 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00201 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47136 * 90.00100 * 25 23 21 27 27 H 1.48499 * 109.47548 * 209.99879 * 25 23 21 28 28 H 1.48499 * 109.47078 * 330.00388 * 25 23 21 29 29 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 30 30 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 31 31 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99554 * 95.00338 * 4 2 1 33 33 H 1.07995 * 119.99578 * 359.97438 * 7 5 4 34 34 H 1.08001 * 120.00115 * 0.02562 * 8 7 5 35 35 H 1.08002 * 120.08484 * 0.02562 * 10 9 8 36 36 H 1.07995 * 119.91226 * 180.29588 * 11 10 9 37 37 H 1.07999 * 119.82379 * 179.71837 * 12 11 10 38 38 H 1.07999 * 119.91540 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.08350 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00485 * 0.02562 * 17 15 2 41 41 H 1.09009 * 109.47454 * 300.27637 * 18 17 15 42 42 H 1.08998 * 109.47492 * 60.27932 * 18 17 15 43 43 H 1.08995 * 109.46638 * 300.00121 * 19 18 17 44 44 H 1.09006 * 109.47139 * 60.00254 * 19 18 17 45 45 H 1.08995 * 109.47672 * 299.99669 * 20 19 18 46 46 H 1.09007 * 109.47288 * 60.00489 * 20 19 18 47 47 H 0.97000 * 120.00572 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8572 1.1626 2.4118 7 6 2.6346 -0.7085 3.5530 8 6 2.7629 -0.0360 4.7142 9 6 3.2525 -0.7302 5.9165 10 6 3.5801 -2.0884 5.8594 11 6 4.0436 -2.7302 6.9885 12 6 4.1734 -2.0364 8.1790 13 6 3.8458 -0.6934 8.2450 14 6 3.3865 -0.0362 7.1231 15 6 2.0324 -0.7105 -1.2304 16 8 2.7296 -1.6966 -1.1191 17 7 1.7067 -0.2501 -2.4545 18 6 2.2000 -0.9372 -3.6506 19 6 1.6946 -0.2128 -4.8999 20 6 2.2104 -0.9301 -6.1490 21 6 1.7121 -0.2169 -7.3795 22 1 1.0901 0.6604 -7.2805 23 6 2.0502 -0.6844 -8.6318 24 7 2.8071 -1.7531 -8.7524 25 14 1.4330 0.2000 -10.1570 26 1 2.4123 1.2431 -10.5546 27 1 1.2727 -0.7762 -11.2645 28 1 0.1235 0.8362 -9.8645 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 2.8907 -1.7565 3.5047 34 1 2.5057 1.0118 4.7628 35 1 3.4750 -2.6321 4.9321 36 1 4.3015 -3.7780 6.9447 37 1 4.5326 -2.5457 9.0610 38 1 3.9502 -0.1587 9.1775 39 1 3.1316 1.0120 7.1760 40 1 1.1493 0.5388 -2.5436 41 1 3.2901 -0.9367 -3.6464 42 1 1.8372 -1.9650 -3.6549 43 1 0.6047 -0.2133 -4.9041 44 1 2.0576 0.8151 -4.8957 45 1 3.3003 -0.9292 -6.1446 46 1 1.8478 -1.9581 -6.1535 47 1 3.0447 -2.0823 -9.6334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491492573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:58 Heat of formation + Delta-G solvation = -73.813007 kcal Electronic energy + Delta-G solvation = -25647.288971 eV Core-core repulsion = 21793.516427 eV Total energy + Delta-G solvation = -3853.772544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50840 -40.42399 -39.88302 -37.10340 -36.12862 -35.25253 -35.04980 -33.27163 -31.98889 -31.81139 -30.28402 -28.57587 -26.21555 -25.32793 -24.21042 -23.49252 -22.33383 -22.16103 -21.23986 -20.53994 -18.92438 -18.58983 -18.08526 -17.56336 -17.19026 -16.85904 -16.55254 -16.33618 -16.08492 -16.02858 -15.55961 -15.44352 -15.07868 -14.66022 -14.41584 -14.27113 -14.23311 -13.96270 -13.83637 -13.74612 -13.39367 -13.36246 -13.12007 -12.76255 -12.68375 -12.54689 -12.38089 -12.17315 -11.84615 -11.67334 -11.59402 -11.36540 -11.24456 -11.16411 -10.93061 -10.54859 -10.30848 -10.15145 -9.89131 -9.24044 -8.19237 -6.30476 -0.46800 0.48407 0.99704 1.42410 1.43220 1.44486 1.54188 1.75017 2.23362 2.36850 2.43887 2.96398 3.14893 3.48214 3.62613 3.82151 3.96758 4.03975 4.06987 4.14224 4.16604 4.22266 4.22861 4.35034 4.52919 4.55308 4.55695 4.63085 4.75505 4.94660 4.95552 4.97824 5.03531 5.15404 5.16305 5.17442 5.20260 5.29609 5.37207 5.52732 5.54594 5.58833 5.66655 5.71533 5.84852 6.04147 6.22590 6.42342 6.44824 6.87136 7.07819 7.11407 7.39304 8.92718 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.001421 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.736150 B =19705.997432 C =20212.886664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 H 0.116 0.884 4 N -0.704 5.704 5 C 0.550 3.450 6 O -0.581 6.581 7 C -0.218 4.218 8 C -0.010 4.010 9 C -0.095 4.095 10 C -0.111 4.111 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.131 4.131 14 C -0.105 4.105 15 C 0.509 3.491 16 O -0.576 6.576 17 N -0.706 5.706 18 C 0.130 3.870 19 C -0.103 4.103 20 C 0.023 3.977 21 C -0.542 4.542 22 H 0.066 0.934 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.260 1.260 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.415 0.585 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.417 0.583 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.067 0.933 45 H -0.008 1.008 46 H -0.006 1.006 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 1.860 35.352 35.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.134 0.866 4 N -0.357 5.357 5 C 0.341 3.659 6 O -0.463 6.463 7 C -0.239 4.239 8 C -0.030 4.030 9 C -0.095 4.095 10 C -0.129 4.129 11 C -0.150 4.150 12 C -0.131 4.131 13 C -0.149 4.149 14 C -0.123 4.123 15 C 0.295 3.705 16 O -0.456 6.456 17 N -0.358 5.358 18 C 0.006 3.994 19 C -0.141 4.141 20 C -0.015 4.015 21 C -0.580 4.580 22 H 0.084 0.916 23 C -0.199 4.199 24 N -0.575 5.575 25 Si 0.790 3.210 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.184 1.184 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.253 0.747 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.255 0.745 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.010 0.990 46 H 0.012 0.988 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.558 1.864 35.289 35.373 hybrid contribution -0.037 -0.035 -1.358 1.359 sum -1.595 1.829 33.931 34.017 Atomic orbital electron populations 1.22111 0.90875 1.03622 1.04523 1.20775 0.97015 0.97621 0.82399 0.86584 1.45663 1.66718 1.15037 1.08251 1.18653 0.76969 0.86210 0.84041 1.90791 1.52578 1.17065 1.85874 1.22880 1.06957 1.01990 0.92030 1.22429 0.90218 0.99526 0.90859 1.19128 1.02522 0.94381 0.93512 1.21707 0.97702 0.93664 0.99809 1.21441 0.99502 1.01283 0.92754 1.21700 0.97964 0.94721 0.98667 1.21443 0.99102 0.95239 0.99084 1.21661 0.97960 1.00720 0.92000 1.20935 0.79736 0.84351 0.85502 1.90686 1.39650 1.28086 1.87135 1.45898 1.52834 1.32339 1.04754 1.21281 0.98348 0.96150 0.83595 1.21613 1.00950 0.99375 0.92194 1.18949 0.94968 0.94999 0.92571 1.21694 1.31548 1.12744 0.91975 0.91555 1.25988 0.95282 0.95775 1.02882 1.70103 1.38143 1.24771 1.24454 0.85445 0.79157 0.78152 0.78276 1.19943 1.21058 1.18421 0.90933 0.88884 0.91530 0.74707 0.83093 0.85191 0.84410 0.83886 0.83721 0.83655 0.84373 0.74535 0.93108 0.92636 0.91103 0.91426 0.98987 0.98780 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.38 71.98 0.68 -1.84 16 2 C 0.13 2.72 2.98 44.24 0.13 2.85 16 3 H 0.12 2.45 7.58 -2.39 -0.02 2.43 16 4 N -0.70 -14.61 4.95 -450.32 -2.23 -16.84 16 5 C 0.55 12.16 7.71 86.38 0.67 12.83 16 6 O -0.58 -16.31 15.89 -4.36 -0.07 -16.38 16 7 C -0.22 -3.64 9.41 23.62 0.22 -3.42 16 8 C -0.01 -0.17 9.46 23.84 0.23 0.06 16 9 C -0.10 -1.36 5.87 -20.15 -0.12 -1.48 16 10 C -0.11 -1.39 9.41 22.58 0.21 -1.17 16 11 C -0.13 -1.36 10.03 22.23 0.22 -1.13 16 12 C -0.11 -1.03 10.04 22.35 0.22 -0.80 16 13 C -0.13 -1.27 10.03 22.23 0.22 -1.04 16 14 C -0.11 -1.28 9.80 22.57 0.22 -1.06 16 15 C 0.51 13.43 7.22 87.66 0.63 14.07 16 16 O -0.58 -19.43 15.84 -3.04 -0.05 -19.48 16 17 N -0.71 -17.84 5.45 -463.05 -2.52 -20.36 16 18 C 0.13 4.32 5.67 86.38 0.49 4.81 16 19 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 20 C 0.02 1.16 4.97 29.85 0.15 1.31 16 21 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 22 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 23 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 24 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 25 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.19 7.56 -2.39 -0.02 1.17 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.42 8.03 7.77 -92.71 -0.72 7.31 16 33 H 0.15 1.79 6.07 -2.91 -0.02 1.77 16 34 H 0.13 2.23 7.52 -2.91 -0.02 2.21 16 35 H 0.14 1.33 6.17 -2.91 -0.02 1.31 16 36 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 39 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.42 7.86 7.89 -92.71 -0.73 7.13 16 41 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 47 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -73.98 402.08 2.01 -71.97 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.47 Total: 20.81 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.03 Total: -8.89 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -4.47 Total: -93.46 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.12 Total: -35.85 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.98 2.01 -71.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.845 kcal (2) G-P(sol) polarization free energy of solvation -73.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds