Wall clock time and date at job start Tue Mar 31 2020 16:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47006 * 2 1 4 4 N 1.46496 * 109.47229 * 240.00554 * 2 1 3 5 5 C 1.34777 * 120.00258 * 84.99168 * 4 2 1 6 6 O 1.21686 * 120.00192 * 0.28328 * 5 4 2 7 7 C 1.46436 * 119.99835 * 179.97438 * 5 4 2 8 8 C 1.34807 * 119.99548 * 180.02562 * 7 5 4 9 9 C 1.47216 * 119.99573 * 180.02562 * 8 7 5 10 10 C 1.39828 * 120.16819 * 359.72831 * 9 8 7 11 11 C 1.37894 * 119.82196 * 179.69976 * 10 9 8 12 12 C 1.38406 * 120.17103 * 0.59906 * 11 10 9 13 13 C 1.38399 * 120.34263 * 359.67623 * 12 11 10 14 14 C 1.37889 * 120.17412 * 0.02562 * 13 12 11 15 15 C 1.50694 * 109.47710 * 119.99998 * 2 1 3 16 16 O 1.21275 * 120.00253 * 120.00041 * 15 2 1 17 17 N 1.34783 * 119.99860 * 300.00322 * 15 2 1 18 18 C 1.46505 * 119.99612 * 179.97438 * 17 15 2 19 19 C 1.52997 * 109.46505 * 180.02562 * 18 17 15 20 20 C 1.53010 * 109.47005 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47079 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00413 * 359.97438 * 21 20 19 23 23 C 1.37884 * 119.99816 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99860 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99879 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47078 * 89.99779 * 25 23 21 27 27 H 1.48497 * 109.46912 * 210.00121 * 25 23 21 28 28 H 1.48504 * 109.47093 * 329.99778 * 25 23 21 29 29 H 1.08993 * 109.47532 * 60.00089 * 1 2 3 30 30 H 1.09002 * 109.46580 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47075 * 299.99277 * 1 2 3 32 32 H 0.97004 * 120.00210 * 264.99782 * 4 2 1 33 33 H 1.07999 * 120.00123 * 0.02562 * 7 5 4 34 34 H 1.07999 * 120.00329 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.09236 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.91744 * 180.31730 * 11 10 9 37 37 H 1.08002 * 119.82541 * 179.69924 * 12 11 10 38 38 H 1.08007 * 119.91183 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.09054 * 180.02562 * 14 13 12 40 40 H 0.97003 * 119.99974 * 359.97438 * 17 15 2 41 41 H 1.09000 * 109.46880 * 299.99671 * 18 17 15 42 42 H 1.08997 * 109.47180 * 59.99939 * 18 17 15 43 43 H 1.09000 * 109.47100 * 299.99312 * 19 18 17 44 44 H 1.08997 * 109.47634 * 59.99993 * 19 18 17 45 45 H 1.08994 * 109.46980 * 299.99939 * 20 19 18 46 46 H 1.08997 * 109.46905 * 59.99578 * 20 19 18 47 47 H 0.97000 * 119.99677 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8623 1.1638 -2.4106 7 6 2.6356 -0.7082 -3.5527 8 6 2.7647 -0.0355 -4.7137 9 6 3.2554 -0.7295 -5.9158 10 6 3.5940 -2.0848 -5.8557 11 6 4.0471 -2.7293 -6.9874 12 6 4.1788 -2.0351 -8.1775 13 6 3.8511 -0.6921 -8.2435 14 6 3.3909 -0.0351 -7.1220 15 6 2.0324 -0.7104 1.2304 16 8 2.7297 -1.6963 1.1191 17 7 1.7068 -0.2499 2.4546 18 6 2.1949 -0.9409 3.6507 19 6 1.6845 -0.2199 4.8999 20 6 2.1936 -0.9419 6.1492 21 6 1.6913 -0.2314 7.3796 22 1 1.0714 0.6473 7.2806 23 6 2.0242 -0.7028 8.6319 24 7 1.5863 -0.0825 9.7057 25 14 3.0982 -2.2215 8.8032 26 1 4.5259 -1.8155 8.8490 27 1 2.7467 -2.9376 10.0557 28 1 2.8758 -3.1188 7.6410 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2491 -1.6317 -1.1527 33 1 2.8926 -1.7561 -3.5042 34 1 2.5081 1.0124 -4.7621 35 1 3.4960 -2.6268 -4.9267 36 1 4.3042 -3.7773 -6.9440 37 1 4.5388 -2.5442 -9.0594 38 1 3.9562 -0.1572 -9.1759 39 1 3.1352 1.0129 -7.1751 40 1 1.1494 0.5389 2.5436 41 1 1.8312 -1.9684 3.6505 42 1 3.2849 -0.9412 3.6508 43 1 2.0478 0.8077 4.9003 44 1 0.5945 -0.2200 4.8996 45 1 1.8299 -1.9694 6.1486 46 1 3.2836 -0.9423 6.1497 47 1 1.8201 -0.4143 10.5867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491492574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:03 Heat of formation + Delta-G solvation = -48.804621 kcal Electronic energy + Delta-G solvation = -25703.832742 eV Core-core repulsion = 21851.144644 eV Total energy + Delta-G solvation = -3852.688099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57267 -39.73117 -39.15344 -35.83397 -35.19285 -34.44309 -33.45235 -31.87919 -31.50676 -30.94502 -29.70012 -27.29060 -25.39870 -24.19086 -23.14807 -22.65552 -21.43770 -20.75817 -20.20359 -19.65757 -18.18054 -17.54975 -16.94242 -16.60300 -16.30651 -15.81775 -15.55848 -15.52719 -15.07574 -14.91763 -14.41314 -14.27662 -14.09212 -13.87769 -13.82158 -13.57968 -13.46075 -12.89002 -12.73833 -12.63309 -12.54918 -12.08291 -12.00019 -11.84268 -11.75873 -11.43262 -11.13648 -10.93351 -10.80978 -10.29852 -10.27855 -10.03732 -9.84451 -9.70509 -9.47335 -9.40233 -9.26132 -9.00780 -8.72584 -8.58296 -6.08957 -4.07957 0.08460 0.90146 1.56863 2.48519 2.65207 2.96665 3.28831 3.31559 3.36719 3.40143 3.43246 4.17079 4.27372 4.41691 4.44807 4.48442 4.56803 4.73133 4.77190 4.82601 4.89161 4.91275 5.00894 5.25031 5.29595 5.41279 5.45234 5.47593 5.51005 5.58167 5.63364 5.76921 5.84304 5.94015 5.98160 5.99469 6.07044 6.17405 6.22838 6.38119 6.44149 6.59563 6.72891 7.18178 7.22886 7.31656 7.43991 7.72913 7.92308 8.09665 8.47264 8.94819 9.53128 11.04257 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.001496 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.131689 B =18716.029398 C =19400.505773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.115 0.885 4 N -0.707 5.707 5 C 0.551 3.449 6 O -0.546 6.546 7 C -0.207 4.207 8 C -0.021 4.021 9 C -0.075 4.075 10 C -0.101 4.101 11 C -0.122 4.122 12 C -0.110 4.110 13 C -0.123 4.123 14 C -0.096 4.096 15 C 0.507 3.493 16 O -0.542 6.542 17 N -0.718 5.718 18 C 0.114 3.886 19 C -0.114 4.114 20 C -0.011 4.011 21 C -0.524 4.524 22 H 0.072 0.928 23 C 0.067 3.933 24 N -0.902 5.902 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.402 0.598 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 -2.668 -36.536 36.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.133 0.867 4 N -0.359 5.359 5 C 0.340 3.660 6 O -0.426 6.426 7 C -0.228 4.228 8 C -0.040 4.040 9 C -0.075 4.075 10 C -0.119 4.119 11 C -0.140 4.140 12 C -0.129 4.129 13 C -0.141 4.141 14 C -0.114 4.114 15 C 0.291 3.709 16 O -0.420 6.420 17 N -0.369 5.369 18 C -0.009 4.009 19 C -0.152 4.152 20 C -0.049 4.049 21 C -0.561 4.561 22 H 0.090 0.910 23 C -0.134 4.134 24 N -0.541 5.541 25 Si 0.707 3.293 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.189 1.189 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.237 0.763 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.992 -2.562 -36.395 36.539 hybrid contribution 0.449 -0.897 0.442 1.097 sum 2.441 -3.459 -35.952 36.201 Atomic orbital electron populations 1.22136 0.92615 1.03279 1.03764 1.20788 0.95824 0.98209 0.83656 0.86688 1.45631 1.67022 1.14877 1.08396 1.18287 0.77613 0.86598 0.83459 1.90814 1.50885 1.15537 1.85326 1.22886 1.05798 1.01066 0.93003 1.22379 0.91337 0.99816 0.90516 1.19059 1.01130 0.93843 0.93510 1.21482 0.97768 0.93792 0.98891 1.21147 0.99806 1.00244 0.92817 1.21347 0.98864 0.94616 0.98025 1.21138 0.99566 0.94888 0.98555 1.21414 0.98016 0.99991 0.91953 1.20515 0.80535 0.84846 0.84958 1.90691 1.38151 1.26474 1.86668 1.46111 1.53012 1.32013 1.05716 1.21711 0.99365 0.96592 0.83219 1.21721 1.00775 0.99673 0.93042 1.19501 0.96191 0.96232 0.92953 1.21092 1.32489 1.13504 0.89058 0.90976 1.25025 0.95671 0.96858 0.95848 1.69912 1.45749 1.40495 0.97941 0.86780 0.81068 0.83741 0.77721 1.20247 1.21335 1.18940 0.90769 0.91662 0.90633 0.75182 0.85132 0.84492 0.85344 0.85613 0.85840 0.85640 0.85365 0.76292 0.91571 0.91605 0.91995 0.91966 0.96303 0.96747 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.38 37.16 0.35 -1.04 16 2 C 0.12 1.30 2.99 -69.09 -0.21 1.09 16 3 H 0.12 1.23 7.57 -51.92 -0.39 0.84 16 4 N -0.71 -7.22 4.95 -56.33 -0.28 -7.50 16 5 C 0.55 5.98 7.71 -12.96 -0.10 5.88 16 6 O -0.55 -7.52 15.89 5.20 0.08 -7.43 16 7 C -0.21 -1.70 9.41 -37.50 -0.35 -2.06 16 8 C -0.02 -0.16 9.46 -37.15 -0.35 -0.52 16 9 C -0.08 -0.55 5.87 -105.06 -0.62 -1.16 16 10 C -0.10 -0.66 9.41 -39.11 -0.37 -1.03 16 11 C -0.12 -0.70 10.03 -39.65 -0.40 -1.10 16 12 C -0.11 -0.59 10.04 -39.46 -0.40 -0.99 16 13 C -0.12 -0.68 10.03 -39.65 -0.40 -1.08 16 14 C -0.10 -0.60 9.80 -39.11 -0.38 -0.99 16 15 C 0.51 6.58 7.22 -10.99 -0.08 6.50 16 16 O -0.54 -8.76 15.84 5.56 0.09 -8.68 16 17 N -0.72 -9.02 5.45 -60.30 -0.33 -9.35 16 18 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 19 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 20 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 21 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 22 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 23 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 24 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 25 Si 0.88 21.49 27.47 -169.99 -4.67 16.83 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 32 H 0.41 3.88 7.77 -40.82 -0.32 3.56 16 33 H 0.13 0.78 6.07 -52.49 -0.32 0.47 16 34 H 0.14 1.12 7.52 -52.49 -0.39 0.72 16 35 H 0.13 0.65 6.17 -52.49 -0.32 0.33 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.12 0.41 8.06 -52.49 -0.42 -0.01 16 38 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.40 4.04 7.89 -40.82 -0.32 3.72 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -34.52 398.47 -9.38 -43.90 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.04 Total: 3.28 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -4.01 Total: -10.32 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.17 Total: -43.58 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.17 Total: -16.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.52 -9.38 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.903 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds