Wall clock time and date at job start Tue Mar 31 2020 16:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47006 * 2 1 4 4 N 1.46496 * 109.47229 * 240.00554 * 2 1 3 5 5 C 1.34777 * 120.00258 * 84.99168 * 4 2 1 6 6 O 1.21686 * 120.00192 * 0.28328 * 5 4 2 7 7 C 1.46436 * 119.99835 * 179.97438 * 5 4 2 8 8 C 1.34807 * 119.99548 * 180.02562 * 7 5 4 9 9 C 1.47216 * 119.99573 * 180.02562 * 8 7 5 10 10 C 1.39828 * 120.16819 * 359.72831 * 9 8 7 11 11 C 1.37894 * 119.82196 * 179.69976 * 10 9 8 12 12 C 1.38406 * 120.17103 * 0.59906 * 11 10 9 13 13 C 1.38399 * 120.34263 * 359.67623 * 12 11 10 14 14 C 1.37889 * 120.17412 * 0.02562 * 13 12 11 15 15 C 1.50694 * 109.47710 * 119.99998 * 2 1 3 16 16 O 1.21275 * 120.00253 * 120.00041 * 15 2 1 17 17 N 1.34783 * 119.99860 * 300.00322 * 15 2 1 18 18 C 1.46505 * 119.99612 * 179.97438 * 17 15 2 19 19 C 1.52997 * 109.46505 * 180.02562 * 18 17 15 20 20 C 1.53010 * 109.47005 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47079 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00413 * 359.97438 * 21 20 19 23 23 C 1.37884 * 119.99816 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99860 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99879 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47078 * 89.99779 * 25 23 21 27 27 H 1.48497 * 109.46912 * 210.00121 * 25 23 21 28 28 H 1.48504 * 109.47093 * 329.99778 * 25 23 21 29 29 H 1.08993 * 109.47532 * 60.00089 * 1 2 3 30 30 H 1.09002 * 109.46580 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47075 * 299.99277 * 1 2 3 32 32 H 0.97004 * 120.00210 * 264.99782 * 4 2 1 33 33 H 1.07999 * 120.00123 * 0.02562 * 7 5 4 34 34 H 1.07999 * 120.00329 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.09236 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.91744 * 180.31730 * 11 10 9 37 37 H 1.08002 * 119.82541 * 179.69924 * 12 11 10 38 38 H 1.08007 * 119.91183 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.09054 * 180.02562 * 14 13 12 40 40 H 0.97003 * 119.99974 * 359.97438 * 17 15 2 41 41 H 1.09000 * 109.46880 * 299.99671 * 18 17 15 42 42 H 1.08997 * 109.47180 * 59.99939 * 18 17 15 43 43 H 1.09000 * 109.47100 * 299.99312 * 19 18 17 44 44 H 1.08997 * 109.47634 * 59.99993 * 19 18 17 45 45 H 1.08994 * 109.46980 * 299.99939 * 20 19 18 46 46 H 1.08997 * 109.46905 * 59.99578 * 20 19 18 47 47 H 0.97000 * 119.99677 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8623 1.1638 -2.4106 7 6 2.6356 -0.7082 -3.5527 8 6 2.7647 -0.0355 -4.7137 9 6 3.2554 -0.7295 -5.9158 10 6 3.5940 -2.0848 -5.8557 11 6 4.0471 -2.7293 -6.9874 12 6 4.1788 -2.0351 -8.1775 13 6 3.8511 -0.6921 -8.2435 14 6 3.3909 -0.0351 -7.1220 15 6 2.0324 -0.7104 1.2304 16 8 2.7297 -1.6963 1.1191 17 7 1.7068 -0.2499 2.4546 18 6 2.1949 -0.9409 3.6507 19 6 1.6845 -0.2199 4.8999 20 6 2.1936 -0.9419 6.1492 21 6 1.6913 -0.2314 7.3796 22 1 1.0714 0.6473 7.2806 23 6 2.0242 -0.7028 8.6319 24 7 1.5863 -0.0825 9.7057 25 14 3.0982 -2.2215 8.8032 26 1 4.5259 -1.8155 8.8490 27 1 2.7467 -2.9376 10.0557 28 1 2.8758 -3.1188 7.6410 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2491 -1.6317 -1.1527 33 1 2.8926 -1.7561 -3.5042 34 1 2.5081 1.0124 -4.7621 35 1 3.4960 -2.6268 -4.9267 36 1 4.3042 -3.7773 -6.9440 37 1 4.5388 -2.5442 -9.0594 38 1 3.9562 -0.1572 -9.1759 39 1 3.1352 1.0129 -7.1751 40 1 1.1494 0.5389 2.5436 41 1 1.8312 -1.9684 3.6505 42 1 3.2849 -0.9412 3.6508 43 1 2.0478 0.8077 4.9003 44 1 0.5945 -0.2200 4.8996 45 1 1.8299 -1.9694 6.1486 46 1 3.2836 -0.9423 6.1497 47 1 1.8201 -0.4143 10.5867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491492574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:02 Heat of formation + Delta-G solvation = -71.171320 kcal Electronic energy + Delta-G solvation = -25704.802635 eV Core-core repulsion = 21851.144644 eV Total energy + Delta-G solvation = -3853.657992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50902 -40.42598 -39.88523 -37.13292 -36.12955 -35.20807 -35.05160 -33.46559 -32.04453 -31.85293 -30.30637 -28.90216 -26.20544 -25.19933 -24.06568 -23.47830 -22.27944 -22.11532 -21.22143 -20.53910 -19.05967 -18.83606 -18.11957 -17.58864 -17.18486 -16.87352 -16.54685 -16.21373 -16.08769 -15.99963 -15.55330 -15.45927 -15.04978 -14.77508 -14.63301 -14.39513 -14.26083 -13.99987 -13.88413 -13.76407 -13.47995 -13.37245 -13.12259 -12.75656 -12.70632 -12.66487 -12.17456 -11.92716 -11.84707 -11.78241 -11.59359 -11.36687 -11.32917 -11.16761 -10.97170 -10.75771 -10.30862 -10.14297 -9.89266 -9.24096 -8.28911 -6.32892 -0.46891 0.48327 0.99578 1.37402 1.38930 1.44493 1.50444 1.75060 2.23458 2.36684 2.38434 2.96293 3.07148 3.48311 3.62491 3.82027 3.96712 4.03469 4.06820 4.09338 4.15199 4.21384 4.22652 4.34904 4.50523 4.52806 4.55581 4.62279 4.75019 4.88997 4.89375 4.97671 5.03323 5.04169 5.14885 5.16162 5.20206 5.29322 5.33303 5.49428 5.54488 5.56586 5.58752 5.65654 5.66493 6.04024 6.27917 6.41847 6.44626 6.75640 7.06737 7.11616 7.32124 8.87536 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.001496 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.131689 B =18716.029398 C =19400.505773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.129 3.871 3 H 0.115 0.885 4 N -0.704 5.704 5 C 0.550 3.450 6 O -0.582 6.582 7 C -0.217 4.217 8 C -0.011 4.011 9 C -0.095 4.095 10 C -0.110 4.110 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.131 4.131 14 C -0.106 4.106 15 C 0.511 3.489 16 O -0.573 6.573 17 N -0.709 5.709 18 C 0.127 3.873 19 C -0.102 4.102 20 C -0.012 4.012 21 C -0.532 4.532 22 H 0.037 0.963 23 C 0.005 3.995 24 N -0.951 5.951 25 Si 0.947 3.053 26 H -0.269 1.269 27 H -0.285 1.285 28 H -0.246 1.246 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.416 0.584 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.416 0.584 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.022 0.978 46 H 0.019 0.981 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -4.202 -38.751 39.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.133 0.867 4 N -0.356 5.356 5 C 0.341 3.659 6 O -0.464 6.464 7 C -0.238 4.238 8 C -0.031 4.031 9 C -0.095 4.095 10 C -0.128 4.128 11 C -0.150 4.150 12 C -0.131 4.131 13 C -0.149 4.149 14 C -0.124 4.124 15 C 0.297 3.703 16 O -0.453 6.453 17 N -0.361 5.361 18 C 0.003 3.997 19 C -0.140 4.140 20 C -0.050 4.050 21 C -0.570 4.570 22 H 0.056 0.944 23 C -0.192 4.192 24 N -0.592 5.592 25 Si 0.771 3.229 26 H -0.194 1.194 27 H -0.211 1.211 28 H -0.169 1.169 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.254 0.746 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.253 0.747 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.037 0.963 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.725 -4.091 -38.628 38.940 hybrid contribution 0.192 -0.345 1.051 1.123 sum 2.917 -4.436 -37.577 37.950 Atomic orbital electron populations 1.22111 0.91007 1.03637 1.04431 1.20771 0.96932 0.97666 0.82578 0.86729 1.45647 1.66727 1.15051 1.08187 1.18661 0.76950 0.86217 0.84084 1.90791 1.52668 1.17029 1.85878 1.22884 1.06886 1.02015 0.91999 1.22430 0.90279 0.99505 0.90892 1.19127 1.02458 0.94446 0.93495 1.21704 0.97673 0.93643 0.99802 1.21445 0.99555 1.01256 0.92706 1.21703 0.97951 0.94702 0.98717 1.21439 0.99122 0.95267 0.99066 1.21658 0.97984 1.00684 0.92061 1.20849 0.79741 0.84325 0.85403 1.90679 1.39555 1.27958 1.87108 1.45920 1.53004 1.32274 1.04882 1.21352 0.98864 0.96259 0.83188 1.21498 1.00980 0.99407 0.92129 1.19468 0.96368 0.96273 0.92923 1.21486 1.31572 1.12667 0.91256 0.94449 1.25983 0.97310 1.00378 0.95497 1.70062 1.47767 1.42686 0.98643 0.85702 0.79143 0.79793 0.78284 1.19377 1.21108 1.16941 0.91063 0.91425 0.89022 0.74641 0.82993 0.85276 0.84329 0.83846 0.83732 0.83704 0.84434 0.74659 0.91845 0.92230 0.91784 0.91472 0.95923 0.96254 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.38 71.98 0.68 -1.76 16 2 C 0.13 2.56 2.99 44.24 0.13 2.69 16 3 H 0.12 2.34 7.57 -2.38 -0.02 2.32 16 4 N -0.70 -13.82 4.95 -450.35 -2.23 -16.05 16 5 C 0.55 11.74 7.71 86.38 0.67 12.40 16 6 O -0.58 -16.07 15.89 -4.30 -0.07 -16.14 16 7 C -0.22 -3.46 9.41 23.62 0.22 -3.24 16 8 C -0.01 -0.18 9.46 23.84 0.23 0.05 16 9 C -0.10 -1.31 5.87 -20.15 -0.12 -1.43 16 10 C -0.11 -1.30 9.41 22.57 0.21 -1.09 16 11 C -0.13 -1.27 10.03 22.23 0.22 -1.05 16 12 C -0.11 -0.98 10.04 22.35 0.22 -0.75 16 13 C -0.13 -1.22 10.03 22.23 0.22 -1.00 16 14 C -0.11 -1.25 9.80 22.57 0.22 -1.02 16 15 C 0.51 12.50 7.22 87.65 0.63 13.14 16 16 O -0.57 -17.81 15.84 -3.01 -0.05 -17.86 16 17 N -0.71 -16.51 5.45 -463.06 -2.52 -19.04 16 18 C 0.13 3.72 5.67 86.38 0.49 4.21 16 19 C -0.10 -3.51 5.27 30.60 0.16 -3.35 16 20 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 21 C -0.53 -29.79 9.66 25.60 0.25 -29.54 16 22 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 23 C 0.01 0.30 5.47 84.66 0.46 0.76 16 24 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 25 Si 0.95 43.80 27.47 68.60 1.88 45.69 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.25 -10.54 6.54 99.48 0.65 -9.88 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.15 7.56 -2.39 -0.02 1.13 16 32 H 0.42 7.44 7.77 -92.71 -0.72 6.72 16 33 H 0.15 1.65 6.07 -2.91 -0.02 1.63 16 34 H 0.13 2.17 7.52 -2.91 -0.02 2.15 16 35 H 0.14 1.21 6.17 -2.91 -0.02 1.20 16 36 H 0.14 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.14 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 39 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.42 7.46 7.89 -92.71 -0.73 6.73 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 46 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.78 398.47 1.82 -72.96 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.52 Total: 20.62 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.02 Total: -11.41 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -4.45 Total: -93.86 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.12 Total: -34.00 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Total: -74.78 1.82 -72.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.787 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds