Wall clock time and date at job start Tue Mar 31 2020 15:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47041 * 2 1 4 4 N 1.46900 * 109.47228 * 239.99898 * 2 1 3 5 5 C 1.52997 * 109.47293 * 119.99672 * 2 1 3 6 6 H 1.09002 * 110.88571 * 56.12051 * 5 2 1 7 7 C 1.55151 * 111.00429 * 180.02562 * 5 2 1 8 8 C 1.54326 * 102.94287 * 153.61499 * 7 5 2 9 9 N 1.47021 * 107.27189 * 337.80928 * 8 7 5 10 10 C 1.34772 * 125.65093 * 178.90794 * 9 8 7 11 11 O 1.21728 * 120.00348 * 180.02562 * 10 9 8 12 12 C 1.46253 * 120.00132 * 0.02562 * 10 9 8 13 13 C 1.35022 * 120.00433 * 180.02562 * 12 10 9 14 14 C 1.46960 * 120.00146 * 180.02562 * 13 12 10 15 15 C 1.40020 * 120.10121 * 359.72572 * 14 13 12 16 16 C 1.37601 * 119.89955 * 180.31639 * 15 14 13 17 17 C 1.39180 * 120.09706 * 359.93547 * 16 15 14 18 18 O 1.35570 * 119.89340 * 180.02562 * 17 16 15 19 19 C 1.34785 * 116.99584 * 174.46597 * 18 17 16 20 20 H 1.07996 * 120.00204 * 5.06195 * 19 18 17 21 21 C 1.38728 * 119.99799 * 185.05501 * 19 18 17 22 22 N 1.31508 * 119.99705 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46845 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46986 * 120.00110 * 23 21 19 26 26 H 1.48497 * 109.47119 * 240.00086 * 23 21 19 27 27 C 1.39172 * 120.20474 * 0.04300 * 17 16 15 28 28 C 1.37593 * 120.10294 * 359.97438 * 27 17 16 29 29 C 1.47428 * 108.70462 * 359.16295 * 9 8 7 30 30 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47217 * 299.99996 * 1 2 3 32 32 H 1.08997 * 109.47245 * 60.00010 * 1 2 3 33 33 H 1.00897 * 110.99577 * 296.04327 * 4 2 1 34 34 H 1.00899 * 110.99678 * 59.99490 * 4 2 1 35 35 H 1.08997 * 110.72530 * 35.25208 * 7 5 2 36 36 H 1.09001 * 110.87411 * 272.04900 * 7 5 2 37 37 H 1.09000 * 109.88356 * 218.38753 * 8 7 5 38 38 H 1.09008 * 109.88185 * 97.22220 * 8 7 5 39 39 H 1.08003 * 120.00076 * 0.02562 * 12 10 9 40 40 H 1.08003 * 119.99484 * 0.02562 * 13 12 10 41 41 H 1.08004 * 120.05275 * 0.25428 * 15 14 13 42 42 H 1.07991 * 119.95000 * 179.97438 * 16 15 14 43 43 H 0.96998 * 119.99281 * 179.97438 * 22 21 19 44 44 H 1.08001 * 119.94632 * 179.97438 * 27 17 16 45 45 H 1.08000 * 120.05446 * 179.97438 * 28 27 17 46 46 H 1.08997 * 110.36689 * 142.73638 * 29 9 8 47 47 H 1.08996 * 110.36892 * 265.07267 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 1 1.6343 -1.7312 1.3077 7 6 3.5910 -0.7413 1.2855 8 6 3.9002 -0.8406 2.7942 9 7 2.7203 -0.3414 3.5154 10 6 2.5850 -0.2833 4.8550 11 8 1.5585 0.1504 5.3449 12 6 3.6714 -0.7413 5.7204 13 6 3.5357 -0.6836 7.0625 14 6 4.6276 -1.1434 7.9320 15 6 5.8075 -1.6470 7.3708 16 6 6.8247 -2.0824 8.1888 17 6 6.6826 -2.0215 9.5720 18 8 7.6876 -2.4511 10.3741 19 6 7.5364 -2.2604 11.6998 20 1 6.6110 -1.8592 12.0856 21 6 8.5697 -2.5796 12.5687 22 7 9.6968 -3.0678 12.0988 23 14 8.3600 -2.3160 14.4061 24 1 7.0094 -1.7606 14.6754 25 1 8.5112 -3.6134 15.1127 26 1 9.3925 -1.3651 14.8907 27 6 5.5118 -1.5213 10.1342 28 6 4.4893 -1.0840 9.3241 29 6 1.7072 0.0795 2.5305 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7503 -1.6648 -1.1908 34 1 1.6961 -0.2350 -2.0385 35 1 3.9986 0.1794 0.8681 36 1 3.9806 -1.6096 0.7540 37 1 4.7689 -0.2280 3.0356 38 1 4.0891 -1.8791 3.0664 39 1 4.5824 -1.1258 5.2858 40 1 2.6245 -0.2996 7.4970 41 1 5.9186 -1.6946 6.2976 42 1 7.7348 -2.4713 7.7569 43 1 10.4193 -3.2907 12.7063 44 1 5.4058 -1.4763 11.2081 45 1 3.5809 -0.6963 9.7612 46 1 0.7071 -0.1697 2.8849 47 1 1.7869 1.1493 2.3378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493225684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:48 Heat of formation + Delta-G solvation = -27.829725 kcal Electronic energy + Delta-G solvation = -26450.451548 eV Core-core repulsion = 22598.672989 eV Total energy + Delta-G solvation = -3851.778559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.19964 -39.18477 -38.20957 -36.85924 -35.74671 -33.20728 -32.30892 -31.27897 -30.42207 -30.01601 -28.52890 -27.81563 -25.72572 -24.66543 -22.64464 -22.34548 -22.00071 -20.59931 -20.21792 -18.74801 -18.05456 -17.29069 -17.07247 -16.46777 -16.32870 -15.42950 -14.86640 -14.81905 -14.60788 -14.41310 -14.25278 -14.03123 -13.82286 -13.59803 -13.50363 -13.31704 -13.08222 -12.84400 -12.83061 -12.54781 -12.48320 -11.91783 -11.76152 -11.73337 -11.64521 -11.35770 -11.14339 -11.12040 -11.05468 -10.95060 -10.64788 -10.52655 -9.77584 -9.59126 -9.48857 -9.18890 -8.88484 -8.67740 -8.37562 -7.10475 -6.64922 -4.19669 1.07971 2.14188 2.56041 2.97717 3.03827 3.05065 3.10807 3.57995 3.82538 3.87735 4.21662 4.33163 4.51111 4.52041 4.74186 4.82510 4.89434 4.92758 4.98317 5.04286 5.05357 5.18218 5.29489 5.31884 5.40679 5.46699 5.53592 5.56307 5.60857 5.64401 5.68031 5.70284 5.78892 5.96251 6.01509 6.12387 6.17252 6.47353 6.54327 6.63229 6.65720 6.80027 6.93014 6.94964 7.13993 7.24407 7.28922 7.53701 7.64602 7.80697 8.31299 8.80087 9.47202 10.51828 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.036310 B = 0.001718 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.942445 B =16297.141636 C =16989.853752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.098 3.902 3 H 0.084 0.916 4 N -0.842 5.842 5 C -0.096 4.096 6 H 0.082 0.918 7 C -0.111 4.111 8 C 0.097 3.903 9 N -0.621 5.621 10 C 0.572 3.428 11 O -0.559 6.559 12 C -0.278 4.278 13 C 0.037 3.963 14 C -0.198 4.198 15 C -0.043 4.043 16 C -0.199 4.199 17 C 0.167 3.833 18 O -0.163 6.163 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.035 4.035 29 C 0.115 3.885 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.340 0.660 34 H 0.342 0.658 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.273 0.727 44 H 0.131 0.869 45 H 0.114 0.886 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.227 4.191 -21.827 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.014 4.014 3 H 0.102 0.898 4 N -0.371 5.371 5 C -0.116 4.116 6 H 0.100 0.900 7 C -0.149 4.149 8 C -0.026 4.026 9 N -0.356 5.356 10 C 0.366 3.634 11 O -0.440 6.440 12 C -0.299 4.299 13 C 0.018 3.982 14 C -0.199 4.199 15 C -0.061 4.061 16 C -0.218 4.218 17 C 0.111 3.889 18 O -0.064 6.064 19 C -0.469 4.469 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.485 5.485 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.261 4.261 28 C -0.053 4.053 29 C -0.009 4.009 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.149 0.851 45 H 0.132 0.868 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.543 4.403 -21.144 24.975 hybrid contribution -1.079 -0.087 0.658 1.267 sum -13.622 4.316 -20.486 24.978 Atomic orbital electron populations 1.22682 0.97507 1.02235 1.02604 1.21355 0.92088 0.98308 0.89617 0.89788 1.58870 1.67343 1.06854 1.04025 1.22341 0.96552 0.99604 0.93100 0.89988 1.22521 0.94773 1.03648 0.93946 1.22120 0.88706 0.99706 0.92055 1.48284 1.17599 1.64730 1.04965 1.18105 0.87543 0.77532 0.80194 1.90775 1.30936 1.48222 1.74086 1.22426 0.99954 1.13463 0.94064 1.22292 0.95721 0.87493 0.92735 1.18456 0.95886 1.12693 0.92858 1.20876 0.91858 0.95008 0.98354 1.20148 1.00927 1.10092 0.90679 1.19612 0.88133 0.90326 0.90873 1.83905 1.37460 1.66402 1.18614 1.21529 1.02382 1.44605 0.78338 0.88484 1.25398 0.94293 0.95990 1.00796 1.70024 1.03998 1.38253 1.36187 0.85581 0.79023 0.78556 0.79941 1.18864 1.19929 1.19909 1.21100 0.94955 1.09348 1.00725 1.20987 0.97214 0.94915 0.92213 1.22081 0.93080 0.98349 0.87365 0.92544 0.91631 0.92569 0.84775 0.84544 0.90389 0.89743 0.91183 0.91281 0.85885 0.85958 0.86465 0.86115 0.91660 0.85109 0.86811 0.90612 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.96 9.34 37.16 0.35 -0.61 16 2 C 0.10 0.54 2.90 -67.71 -0.20 0.34 16 3 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 4 N -0.84 -3.95 8.91 -4.67 -0.04 -3.99 16 5 C -0.10 -0.66 2.67 -88.59 -0.24 -0.90 16 6 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 7 C -0.11 -0.77 6.10 -24.90 -0.15 -0.92 16 8 C 0.10 0.86 6.05 -3.06 -0.02 0.84 16 9 N -0.62 -7.36 3.33 -172.34 -0.57 -7.93 16 10 C 0.57 8.71 7.77 -13.04 -0.10 8.61 16 11 O -0.56 -10.34 16.49 5.16 0.09 -10.25 16 12 C -0.28 -4.05 8.93 -37.51 -0.33 -4.38 16 13 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 14 C -0.20 -3.44 5.87 -105.03 -0.62 -4.05 16 15 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 16 C -0.20 -4.01 9.97 -39.46 -0.39 -4.40 16 17 C 0.17 3.86 6.66 -38.89 -0.26 3.60 16 18 O -0.16 -4.43 9.74 0.73 0.01 -4.43 16 19 C -0.39 -10.47 9.48 30.91 0.29 -10.18 16 20 H 0.10 2.38 5.18 -52.49 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.85 -23.87 13.67 55.48 0.76 -23.11 16 23 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.24 -5.05 9.14 -39.47 -0.36 -5.41 16 28 C -0.03 -0.63 9.78 -39.15 -0.38 -1.01 16 29 C 0.11 1.11 5.62 -2.64 -0.01 1.09 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.37 7.52 -51.93 -0.39 -0.02 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.34 1.36 8.98 -39.29 -0.35 1.01 16 34 H 0.34 1.20 9.04 -39.29 -0.36 0.84 16 35 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.12 1.57 5.37 -52.48 -0.28 1.29 16 40 H 0.12 1.92 7.52 -52.48 -0.39 1.52 16 41 H 0.12 1.67 6.16 -52.48 -0.32 1.35 16 42 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.13 2.70 5.62 -52.49 -0.29 2.41 16 45 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.08 0.81 7.98 -51.93 -0.41 0.39 16 47 H 0.06 0.61 7.98 -51.93 -0.41 0.19 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -31.27 388.40 -9.03 -40.30 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.85 Total: 6.26 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -3.24 Total: -17.27 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.14 Total: -35.03 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.68 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.27 -9.03 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493225684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.470 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds