Wall clock time and date at job start Tue Mar 31 2020 15:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47041 * 2 1 4 4 N 1.46900 * 109.47228 * 239.99898 * 2 1 3 5 5 C 1.52997 * 109.47293 * 119.99672 * 2 1 3 6 6 H 1.09002 * 110.88571 * 56.12051 * 5 2 1 7 7 C 1.55151 * 111.00429 * 180.02562 * 5 2 1 8 8 C 1.54326 * 102.94287 * 153.61499 * 7 5 2 9 9 N 1.47021 * 107.27189 * 337.80928 * 8 7 5 10 10 C 1.34772 * 125.65093 * 178.90794 * 9 8 7 11 11 O 1.21728 * 120.00348 * 180.02562 * 10 9 8 12 12 C 1.46253 * 120.00132 * 0.02562 * 10 9 8 13 13 C 1.35022 * 120.00433 * 180.02562 * 12 10 9 14 14 C 1.46960 * 120.00146 * 180.02562 * 13 12 10 15 15 C 1.40020 * 120.10121 * 359.72572 * 14 13 12 16 16 C 1.37601 * 119.89955 * 180.31639 * 15 14 13 17 17 C 1.39180 * 120.09706 * 359.93547 * 16 15 14 18 18 O 1.35570 * 119.89340 * 180.02562 * 17 16 15 19 19 C 1.34785 * 116.99584 * 174.46597 * 18 17 16 20 20 H 1.07996 * 120.00204 * 5.06195 * 19 18 17 21 21 C 1.38728 * 119.99799 * 185.05501 * 19 18 17 22 22 N 1.31508 * 119.99705 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46845 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46986 * 120.00110 * 23 21 19 26 26 H 1.48497 * 109.47119 * 240.00086 * 23 21 19 27 27 C 1.39172 * 120.20474 * 0.04300 * 17 16 15 28 28 C 1.37593 * 120.10294 * 359.97438 * 27 17 16 29 29 C 1.47428 * 108.70462 * 359.16295 * 9 8 7 30 30 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47217 * 299.99996 * 1 2 3 32 32 H 1.08997 * 109.47245 * 60.00010 * 1 2 3 33 33 H 1.00897 * 110.99577 * 296.04327 * 4 2 1 34 34 H 1.00899 * 110.99678 * 59.99490 * 4 2 1 35 35 H 1.08997 * 110.72530 * 35.25208 * 7 5 2 36 36 H 1.09001 * 110.87411 * 272.04900 * 7 5 2 37 37 H 1.09000 * 109.88356 * 218.38753 * 8 7 5 38 38 H 1.09008 * 109.88185 * 97.22220 * 8 7 5 39 39 H 1.08003 * 120.00076 * 0.02562 * 12 10 9 40 40 H 1.08003 * 119.99484 * 0.02562 * 13 12 10 41 41 H 1.08004 * 120.05275 * 0.25428 * 15 14 13 42 42 H 1.07991 * 119.95000 * 179.97438 * 16 15 14 43 43 H 0.96998 * 119.99281 * 179.97438 * 22 21 19 44 44 H 1.08001 * 119.94632 * 179.97438 * 27 17 16 45 45 H 1.08000 * 120.05446 * 179.97438 * 28 27 17 46 46 H 1.08997 * 110.36689 * 142.73638 * 29 9 8 47 47 H 1.08996 * 110.36892 * 265.07267 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2492 6 1 1.6343 -1.7312 1.3077 7 6 3.5910 -0.7413 1.2855 8 6 3.9002 -0.8406 2.7942 9 7 2.7203 -0.3414 3.5154 10 6 2.5850 -0.2833 4.8550 11 8 1.5585 0.1504 5.3449 12 6 3.6714 -0.7413 5.7204 13 6 3.5357 -0.6836 7.0625 14 6 4.6276 -1.1434 7.9320 15 6 5.8075 -1.6470 7.3708 16 6 6.8247 -2.0824 8.1888 17 6 6.6826 -2.0215 9.5720 18 8 7.6876 -2.4511 10.3741 19 6 7.5364 -2.2604 11.6998 20 1 6.6110 -1.8592 12.0856 21 6 8.5697 -2.5796 12.5687 22 7 9.6968 -3.0678 12.0988 23 14 8.3600 -2.3160 14.4061 24 1 7.0094 -1.7606 14.6754 25 1 8.5112 -3.6134 15.1127 26 1 9.3925 -1.3651 14.8907 27 6 5.5118 -1.5213 10.1342 28 6 4.4893 -1.0840 9.3241 29 6 1.7072 0.0795 2.5305 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7503 -1.6648 -1.1908 34 1 1.6961 -0.2350 -2.0385 35 1 3.9986 0.1794 0.8681 36 1 3.9806 -1.6096 0.7540 37 1 4.7689 -0.2280 3.0356 38 1 4.0891 -1.8791 3.0664 39 1 4.5824 -1.1258 5.2858 40 1 2.6245 -0.2996 7.4970 41 1 5.9186 -1.6946 6.2976 42 1 7.7348 -2.4713 7.7569 43 1 10.4193 -3.2907 12.7063 44 1 5.4058 -1.4763 11.2081 45 1 3.5809 -0.6963 9.7612 46 1 0.7071 -0.1697 2.8849 47 1 1.7869 1.1493 2.3378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493225684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:47 Heat of formation + Delta-G solvation = -47.895620 kcal Electronic energy + Delta-G solvation = -26451.321671 eV Core-core repulsion = 22598.672989 eV Total energy + Delta-G solvation = -3852.648681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.18588 -40.80171 -39.17022 -38.43913 -36.42899 -34.75712 -34.01633 -32.12806 -31.95847 -30.63246 -29.71569 -28.60574 -27.51394 -25.71633 -24.00862 -23.47863 -22.93652 -21.64418 -21.07943 -20.18787 -19.43402 -18.79761 -18.43248 -17.27099 -16.92610 -16.67554 -16.45637 -16.02922 -15.96031 -15.61845 -15.57537 -15.08643 -14.81240 -14.70292 -14.65913 -14.19941 -14.04017 -13.92829 -13.83512 -13.59092 -13.51279 -13.31742 -13.17255 -13.04588 -12.73299 -12.57799 -12.22315 -12.17866 -12.10555 -11.97338 -11.68438 -11.49635 -11.21742 -11.13426 -11.01304 -10.58874 -9.90173 -9.67549 -9.55647 -8.69029 -8.52601 -6.18590 -0.27865 0.57775 1.10627 1.36069 1.44944 1.53931 2.01551 2.15049 2.31897 2.85644 3.16905 3.31411 3.41576 3.64153 3.67217 3.77839 3.92546 4.07093 4.09770 4.25288 4.29054 4.30129 4.32584 4.33575 4.41405 4.46780 4.56924 4.65062 4.71317 4.86381 4.88591 4.93211 4.96876 5.01755 5.07595 5.10428 5.18537 5.23245 5.25912 5.31373 5.39924 5.47033 5.59968 5.63328 5.79307 5.97122 6.09175 6.29499 6.49232 6.66049 6.91921 7.14520 7.68714 8.69634 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.036310 B = 0.001718 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.942445 B =16297.141636 C =16989.853752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.105 3.895 3 H 0.081 0.919 4 N -0.844 5.844 5 C -0.085 4.085 6 H 0.083 0.917 7 C -0.102 4.102 8 C 0.088 3.912 9 N -0.617 5.617 10 C 0.561 3.439 11 O -0.598 6.598 12 C -0.245 4.245 13 C 0.019 3.981 14 C -0.171 4.171 15 C -0.037 4.037 16 C -0.206 4.206 17 C 0.131 3.869 18 O -0.219 6.219 19 C -0.417 4.417 20 H 0.106 0.894 21 C -0.018 4.018 22 N -0.913 5.913 23 Si 1.019 2.981 24 H -0.251 1.251 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.249 4.249 28 C -0.039 4.039 29 C 0.109 3.891 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.345 0.655 34 H 0.350 0.650 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.125 0.875 41 H 0.158 0.842 42 H 0.124 0.876 43 H 0.275 0.725 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.062 0.938 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.119 4.956 -24.627 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.007 4.007 3 H 0.099 0.901 4 N -0.374 5.374 5 C -0.105 4.105 6 H 0.101 0.899 7 C -0.140 4.140 8 C -0.034 4.034 9 N -0.349 5.349 10 C 0.355 3.645 11 O -0.482 6.482 12 C -0.265 4.265 13 C -0.001 4.001 14 C -0.172 4.172 15 C -0.054 4.054 16 C -0.225 4.225 17 C 0.079 3.921 18 O -0.124 6.124 19 C -0.493 4.493 20 H 0.123 0.877 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.838 3.162 24 H -0.174 1.174 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.268 4.268 28 C -0.057 4.057 29 C -0.014 4.014 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.165 0.835 40 H 0.143 0.857 41 H 0.175 0.825 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.162 0.838 46 H 0.080 0.920 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.479 5.180 -24.040 28.537 hybrid contribution -0.861 -0.181 0.960 1.302 sum -15.339 4.999 -23.080 28.160 Atomic orbital electron populations 1.22656 0.97281 1.02272 1.02550 1.21233 0.92159 0.97986 0.89338 0.90064 1.58848 1.67337 1.07245 1.04002 1.22264 0.96722 0.99236 0.92278 0.89894 1.22494 0.94465 1.04426 0.92613 1.22408 0.87715 1.00282 0.92996 1.48390 1.19026 1.63118 1.04392 1.18250 0.87159 0.77657 0.81447 1.90766 1.32307 1.49976 1.75107 1.22709 1.00138 1.10043 0.93628 1.22184 0.95498 0.89387 0.93050 1.18755 0.95931 1.09659 0.92879 1.21257 0.90678 0.93473 1.00040 1.20413 1.02075 1.10104 0.89891 1.20182 0.88430 0.91568 0.91947 1.83886 1.39596 1.69873 1.19025 1.21948 1.03089 1.45342 0.78898 0.87692 1.26607 0.93745 0.95554 1.05766 1.70153 1.05334 1.41523 1.37953 0.84523 0.79516 0.78669 0.73494 1.17447 1.19292 1.19305 1.21197 0.95115 1.09490 1.00964 1.21308 0.97500 0.94362 0.92542 1.22238 0.92016 0.99092 0.88049 0.92460 0.92604 0.91735 0.84215 0.83632 0.90085 0.88440 0.90297 0.90291 0.83456 0.85747 0.82492 0.85801 0.91583 0.85703 0.83803 0.91951 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 9.34 71.98 0.67 -0.84 16 2 C 0.11 0.87 2.90 44.91 0.13 1.00 16 3 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 4 N -0.84 -5.43 8.91 -168.68 -1.50 -6.93 16 5 C -0.09 -0.93 2.67 -9.48 -0.03 -0.96 16 6 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 7 C -0.10 -1.04 6.10 31.78 0.19 -0.84 16 8 C 0.09 1.22 6.05 86.73 0.52 1.74 16 9 N -0.62 -12.80 3.33 -817.38 -2.72 -15.52 16 10 C 0.56 15.57 7.77 86.33 0.67 16.24 16 11 O -0.60 -21.12 16.49 -4.44 -0.07 -21.20 16 12 C -0.24 -6.17 8.93 23.61 0.21 -5.96 16 13 C 0.02 0.53 9.45 23.82 0.23 0.75 16 14 C -0.17 -5.47 5.87 -20.13 -0.12 -5.59 16 15 C -0.04 -1.17 9.40 22.55 0.21 -0.96 16 16 C -0.21 -8.23 9.97 22.35 0.22 -8.01 16 17 C 0.13 6.26 6.66 22.72 0.15 6.41 16 18 O -0.22 -12.68 9.74 -20.30 -0.20 -12.88 16 19 C -0.42 -23.49 9.48 67.94 0.64 -22.84 16 20 H 0.11 5.42 5.18 -2.91 -0.02 5.40 16 21 C -0.02 -0.98 5.49 84.86 0.47 -0.52 16 22 N -0.91 -54.27 13.67 21.63 0.30 -53.98 16 23 Si 1.02 41.55 29.55 68.60 2.03 43.58 16 24 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 25 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 26 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 27 C -0.25 -10.49 9.14 22.34 0.20 -10.28 16 28 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 29 C 0.11 1.87 5.62 86.78 0.49 2.36 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.56 7.52 -2.39 -0.02 0.54 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.34 1.74 8.98 -89.70 -0.81 0.94 16 34 H 0.35 1.48 9.04 -89.69 -0.81 0.67 16 35 H 0.08 0.83 8.04 -2.39 -0.02 0.81 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.15 2.97 5.37 -2.91 -0.02 2.95 16 40 H 0.12 3.56 7.52 -2.91 -0.02 3.54 16 41 H 0.16 3.69 6.16 -2.91 -0.02 3.68 16 42 H 0.12 4.79 8.06 -2.92 -0.02 4.76 16 43 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.13 5.33 5.62 -2.91 -0.02 5.31 16 45 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 46 H 0.06 1.26 7.98 -2.39 -0.02 1.24 16 47 H 0.07 1.15 7.98 -2.39 -0.02 1.13 16 Total: -1.00 -72.68 388.40 2.31 -70.37 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.61 Total: 25.98 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 5.09 Total: -29.43 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -3.93 Total: -76.43 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.27 Total: -34.08 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -72.68 2.31 -70.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493225684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.478 kcal (2) G-P(sol) polarization free energy of solvation -72.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds