Wall clock time and date at job start Tue Mar 31 2020 16:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.46889 * 2 1 4 4 C 1.48553 * 111.00177 * 166.59242 * 3 2 1 5 5 C 1.54378 * 104.59729 * 200.96288 * 4 3 2 6 6 C 1.54251 * 105.06336 * 23.84724 * 5 4 3 7 7 H 1.08991 * 110.32995 * 241.00757 * 6 5 4 8 8 N 1.46504 * 110.32509 * 118.89589 * 6 5 4 9 9 C 1.34778 * 119.99479 * 86.45378 * 8 6 5 10 10 O 1.21721 * 120.00057 * 0.02562 * 9 8 6 11 11 C 1.46253 * 119.99621 * 180.02562 * 9 8 6 12 12 C 1.35031 * 120.00139 * 186.66401 * 11 9 8 13 13 C 1.46964 * 119.99353 * 15.00801 * 12 11 9 14 14 C 1.40021 * 120.10417 * 38.47651 * 13 12 11 15 15 C 1.37596 * 119.89620 * 180.02562 * 14 13 12 16 16 C 1.39179 * 120.10507 * 0.25236 * 15 14 13 17 17 O 1.35560 * 119.90180 * 179.72424 * 16 15 14 18 18 C 1.34778 * 117.00133 * 6.47549 * 17 16 15 19 19 H 1.08002 * 120.00045 * 5.78295 * 18 17 16 20 20 C 1.38721 * 120.00428 * 185.78042 * 18 17 16 21 21 N 1.31507 * 120.00181 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99735 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47032 * 90.00214 * 22 20 18 24 24 H 1.48504 * 109.47340 * 209.99777 * 22 20 18 25 25 H 1.48493 * 109.47179 * 330.00229 * 22 20 18 26 26 C 1.39176 * 120.19712 * 359.49165 * 16 15 14 27 27 C 1.37598 * 120.10536 * 0.51128 * 26 16 15 28 28 C 1.48566 * 111.00200 * 51.17215 * 3 2 1 29 29 H 1.08991 * 109.47605 * 304.56366 * 1 2 3 30 30 H 1.09006 * 109.46986 * 64.56929 * 1 2 3 31 31 H 1.08998 * 109.47130 * 184.55812 * 1 2 3 32 32 H 1.08999 * 109.47151 * 239.99812 * 2 1 3 33 33 H 1.08999 * 109.46765 * 119.99446 * 2 1 3 34 34 H 1.09000 * 110.41355 * 82.18082 * 4 3 2 35 35 H 1.09005 * 110.51293 * 319.78905 * 4 3 2 36 36 H 1.09003 * 110.32386 * 264.95447 * 5 4 3 37 37 H 1.09000 * 110.41155 * 142.79580 * 5 4 3 38 38 H 0.96993 * 120.00303 * 266.46138 * 8 6 5 39 39 H 1.07998 * 120.00481 * 6.66767 * 11 9 8 40 40 H 1.07996 * 119.99954 * 195.00449 * 12 11 9 41 41 H 1.07997 * 120.05477 * 0.04699 * 14 13 12 42 42 H 1.08003 * 119.94924 * 179.97438 * 15 14 13 43 43 H 0.97003 * 119.99957 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.94839 * 180.25244 * 26 16 15 45 45 H 1.08005 * 120.05286 * 179.76754 * 27 26 16 46 46 H 1.08997 * 110.40561 * 40.26057 * 28 3 2 47 47 H 1.09004 * 110.41131 * 277.81946 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4373 0.3216 5 6 3.7072 2.8824 0.8098 6 6 2.3312 3.3689 1.3089 7 1 2.0035 4.2339 0.7325 8 7 2.3958 3.7030 2.7339 9 6 2.7848 4.9341 3.1204 10 8 3.0821 5.7685 2.2855 11 6 2.8499 5.2675 4.5429 12 6 3.1082 6.5356 4.9281 13 6 2.9986 7.6347 3.9586 14 6 1.9710 7.6323 3.0074 15 6 1.8727 8.6632 2.1014 16 6 2.7956 9.7046 2.1261 17 8 2.6982 10.7154 1.2280 18 6 1.6126 10.7217 0.4293 19 1 0.8244 9.9996 0.5836 20 6 1.5075 11.6555 -0.5911 21 7 0.4480 11.6620 -1.3701 22 14 2.8704 12.9049 -0.8577 23 1 3.8716 12.3508 -1.8043 24 1 2.2949 14.1529 -1.4204 25 1 3.5283 13.2041 0.4395 26 6 3.8154 9.7140 3.0731 27 6 3.9217 8.6873 3.9831 28 6 1.3772 2.1768 1.0805 29 1 -0.3634 0.5830 0.8462 30 1 -0.3633 0.4413 -0.9281 31 1 -0.3633 -1.0244 0.0817 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0636 1.2340 -0.5690 35 1 3.7112 0.7249 1.1102 36 1 4.0542 3.5076 -0.0130 37 1 4.4313 2.8939 1.6244 38 1 2.1587 3.0381 3.3992 39 1 2.6913 4.4994 5.2854 40 1 3.3953 6.7422 5.9485 41 1 1.2566 6.8227 2.9851 42 1 1.0807 8.6619 1.3671 43 1 0.3748 12.3148 -2.0839 44 1 4.5270 10.5262 3.0912 45 1 4.7157 8.6935 4.7152 46 1 1.2900 1.5802 1.9885 47 1 0.3967 2.5303 0.7612 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493758127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:22 Heat of formation + Delta-G solvation = 2.752504 kcal Electronic energy + Delta-G solvation = -27675.456690 eV Core-core repulsion = 23825.004276 eV Total energy + Delta-G solvation = -3850.452414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.19271 -39.22713 -38.55584 -36.62891 -34.77002 -33.07816 -32.49754 -32.21734 -30.15774 -29.10450 -28.66703 -27.92386 -25.27259 -23.90276 -22.93400 -21.95636 -21.34202 -20.85281 -20.37675 -19.12837 -17.90787 -17.46652 -16.82818 -16.70073 -16.32553 -15.09883 -14.98739 -14.61241 -14.44270 -14.32747 -14.11345 -14.00798 -13.72760 -13.58492 -13.33654 -13.23383 -12.89600 -12.67755 -12.49431 -12.27614 -12.15687 -12.10909 -11.90454 -11.63689 -11.51457 -11.38929 -11.22434 -10.94391 -10.86196 -10.76737 -10.67043 -10.12928 -9.56399 -9.37920 -9.26415 -8.99152 -8.81727 -8.73429 -7.96874 -6.98458 -6.41543 -4.04836 1.14628 2.34132 2.65235 3.18837 3.23767 3.28098 3.42084 3.60593 3.81206 4.24963 4.29603 4.48391 4.64542 4.75459 4.90021 4.90718 4.92928 4.94730 5.07753 5.12077 5.13265 5.18422 5.19991 5.32101 5.46966 5.56175 5.58121 5.64313 5.68151 5.72497 5.76038 5.82814 5.96507 6.01444 6.19721 6.23849 6.34850 6.39306 6.55902 6.64936 6.67934 6.68960 6.93023 7.17454 7.31399 7.43328 7.65366 7.67734 7.85220 8.06874 8.53344 8.93516 9.57387 10.65815 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.002850 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.463712 B = 9820.707709 C =11398.762990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.040 3.960 3 N -0.508 5.508 4 C 0.033 3.967 5 C -0.134 4.134 6 C 0.142 3.858 7 H 0.102 0.898 8 N -0.731 5.731 9 C 0.541 3.459 10 O -0.510 6.510 11 C -0.270 4.270 12 C 0.027 3.973 13 C -0.185 4.185 14 C 0.018 3.982 15 C -0.233 4.233 16 C 0.178 3.822 17 O -0.211 6.211 18 C -0.386 4.386 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.876 5.876 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.211 4.211 27 C -0.045 4.045 28 C 0.029 3.971 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.393 0.607 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.280 0.720 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.048 0.952 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 -22.313 9.649 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.088 4.088 3 N -0.233 5.233 4 C -0.095 4.095 5 C -0.173 4.173 6 C 0.037 3.963 7 H 0.120 0.880 8 N -0.384 5.384 9 C 0.331 3.669 10 O -0.386 6.386 11 C -0.292 4.292 12 C 0.008 3.992 13 C -0.185 4.185 14 C -0.001 4.001 15 C -0.252 4.252 16 C 0.125 3.875 17 O -0.115 6.115 18 C -0.462 4.462 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.230 4.230 27 C -0.064 4.064 28 C -0.099 4.099 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.148 0.852 43 H 0.090 0.910 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.066 0.934 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.326 -21.181 8.222 22.962 hybrid contribution 0.438 -0.512 0.806 1.050 sum 3.764 -21.692 9.028 23.795 Atomic orbital electron populations 1.21893 0.94692 1.01847 1.02912 1.22271 0.96182 0.89343 1.00973 1.65450 1.03815 1.11307 1.42728 1.23157 0.89546 0.96881 0.99946 1.22751 0.97554 0.95328 1.01688 1.21584 0.94496 0.97998 0.82244 0.88022 1.46104 1.70493 1.14656 1.07155 1.18483 0.77199 0.81373 0.89894 1.90994 1.47014 1.46779 1.53846 1.22582 1.14496 0.97812 0.94271 1.22328 0.87453 0.91701 0.97748 1.18370 1.01215 0.96982 1.01983 1.20650 0.94848 0.93884 0.90721 1.21081 1.03788 0.96568 1.03738 1.19311 0.92807 0.86687 0.88711 1.83514 1.43359 1.41690 1.42959 1.20828 0.95331 1.19179 1.10825 0.87520 1.24500 0.97571 0.97796 0.94152 1.69627 1.27736 1.35977 1.17960 0.86179 0.81308 0.79848 0.79588 1.19824 1.20724 1.18273 1.19999 1.01784 1.02007 0.99238 1.20665 0.96718 0.92128 0.96876 1.23347 0.98891 0.94185 0.93494 0.92380 0.91607 0.92208 0.90394 0.94774 0.89930 0.93909 0.90118 0.90810 0.77316 0.86138 0.86001 0.88196 0.85198 0.90981 0.86633 0.86974 0.93382 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.66 37.16 0.36 -0.71 16 2 C 0.04 0.31 5.88 -3.83 -0.02 0.28 16 3 N -0.51 -4.84 5.51 -229.97 -1.27 -6.11 16 4 C 0.03 0.29 6.49 -2.19 -0.01 0.28 16 5 C -0.13 -1.46 6.78 -25.35 -0.17 -1.64 16 6 C 0.14 1.63 3.36 -66.55 -0.22 1.41 16 7 H 0.10 1.49 7.64 -51.93 -0.40 1.09 16 8 N -0.73 -7.93 5.04 -53.91 -0.27 -8.20 16 9 C 0.54 7.78 6.59 -13.04 -0.09 7.69 16 10 O -0.51 -9.79 11.95 5.17 0.06 -9.73 16 11 C -0.27 -3.29 9.85 -37.50 -0.37 -3.66 16 12 C 0.03 0.37 9.82 -37.19 -0.37 0.00 16 13 C -0.18 -3.29 4.65 -105.02 -0.49 -3.78 16 14 C 0.02 0.35 6.61 -39.15 -0.26 0.09 16 15 C -0.23 -5.42 9.10 -39.47 -0.36 -5.78 16 16 C 0.18 4.34 6.66 -38.88 -0.26 4.09 16 17 O -0.21 -5.77 8.57 0.78 0.01 -5.77 16 18 C -0.39 -11.18 9.89 30.91 0.31 -10.88 16 19 H 0.11 3.17 5.53 -52.49 -0.29 2.88 16 20 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16 21 N -0.88 -25.66 13.96 55.48 0.77 -24.89 16 22 Si 0.91 22.07 28.62 -169.99 -4.86 17.20 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16 26 C -0.21 -4.42 9.97 -39.47 -0.39 -4.81 16 27 C -0.05 -0.82 9.78 -39.14 -0.38 -1.20 16 28 C 0.03 0.27 4.70 -2.18 -0.01 0.26 16 29 H 0.06 0.40 6.48 -51.93 -0.34 0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.24 7.80 -51.93 -0.40 -0.17 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.34 7.77 -51.93 -0.40 -0.06 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 38 H 0.39 3.05 8.32 -40.82 -0.34 2.71 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.10 1.89 6.73 -52.49 -0.35 1.53 16 42 H 0.13 3.20 5.71 -52.48 -0.30 2.90 16 43 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 45 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 46 H 0.05 0.37 7.51 -51.93 -0.39 -0.02 16 47 H 0.09 0.86 7.59 -51.93 -0.39 0.46 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -32.57 380.54 -9.62 -42.19 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.96 Total: 6.19 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.84 Total: -16.63 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.76 Total: -39.19 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.07 Total: -15.50 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.57 -9.62 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493758127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.945 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds