Wall clock time and date at job start Tue Mar 31 2020 16:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47226 * 2 1 4 4 C 1.48536 * 110.99835 * 307.39277 * 3 2 1 5 5 C 1.55101 * 103.28752 * 200.33309 * 4 3 2 6 6 C 1.54597 * 102.84317 * 37.30344 * 5 4 3 7 7 H 1.09002 * 110.30674 * 97.11921 * 6 5 4 8 8 N 1.46496 * 110.30974 * 219.18594 * 6 5 4 9 9 C 1.34774 * 120.00329 * 272.48858 * 8 6 5 10 10 O 1.21731 * 120.00064 * 359.72528 * 9 8 6 11 11 C 1.46253 * 120.00239 * 179.72455 * 9 8 6 12 12 C 1.35030 * 119.99982 * 179.97438 * 11 9 8 13 13 C 1.46961 * 120.00092 * 179.97438 * 12 11 9 14 14 C 1.40030 * 120.09727 * 359.73250 * 13 12 11 15 15 C 1.37597 * 119.89395 * 179.69167 * 14 13 12 16 16 C 1.39178 * 120.10091 * 0.59709 * 15 14 13 17 17 O 1.35567 * 119.89978 * 179.69175 * 16 15 14 18 18 C 1.34782 * 117.00250 * 174.42317 * 17 16 15 19 19 H 1.08008 * 119.99799 * 5.06728 * 18 17 16 20 20 C 1.38723 * 120.00376 * 185.06136 * 18 17 16 21 21 N 1.31502 * 119.99401 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99991 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47167 * 60.00322 * 22 20 18 24 24 H 1.48503 * 109.46934 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47227 * 299.99861 * 22 20 18 26 26 C 1.39177 * 120.20474 * 359.67689 * 16 15 14 27 27 C 1.37604 * 120.09826 * 0.02562 * 26 16 15 28 28 C 1.47901 * 111.00406 * 189.99897 * 3 2 1 29 29 H 1.09004 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47663 * 300.00561 * 1 2 3 31 31 H 1.09006 * 109.46769 * 60.00720 * 1 2 3 32 32 H 1.09002 * 109.47495 * 239.99741 * 2 1 3 33 33 H 1.09002 * 109.47229 * 119.99870 * 2 1 3 34 34 H 1.09005 * 110.66669 * 318.71410 * 4 3 2 35 35 H 1.09001 * 110.66946 * 81.84308 * 4 3 2 36 36 H 1.09004 * 110.70742 * 279.00163 * 5 4 3 37 37 H 1.08998 * 110.81312 * 155.66134 * 5 4 3 38 38 H 0.96999 * 119.99828 * 92.20758 * 8 6 5 39 39 H 1.08000 * 120.00433 * 359.97438 * 11 9 8 40 40 H 1.08000 * 119.99585 * 359.97438 * 12 11 9 41 41 H 1.07998 * 120.05301 * 359.97438 * 14 13 12 42 42 H 1.07997 * 119.94988 * 180.31407 * 15 14 13 43 43 H 0.97005 * 119.99821 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.95066 * 180.02562 * 26 16 15 45 45 H 1.08004 * 120.04677 * 180.02562 * 27 26 16 46 46 H 1.09001 * 109.91805 * 26.48702 * 28 3 2 47 47 H 1.09002 * 109.91516 * 265.19345 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4031 2.1675 -1.1017 5 6 2.3789 3.3596 -1.2817 6 6 3.7623 2.7091 -1.0512 7 1 4.2251 2.4563 -2.0051 8 7 4.6287 3.6127 -0.2903 9 6 5.3761 4.5310 -0.9342 10 8 5.3350 4.6062 -2.1485 11 6 6.2364 5.4371 -0.1741 12 6 6.9856 6.3567 -0.8193 13 6 7.8497 7.2676 -0.0555 14 6 7.8935 7.1874 1.3418 15 6 8.7088 8.0380 2.0523 16 6 9.4798 8.9854 1.3851 17 8 10.2769 9.8256 2.0897 18 6 11.0840 10.6407 1.3820 19 1 11.0174 10.6638 0.3042 20 6 12.0001 11.4502 2.0378 21 7 12.0813 11.4218 3.3500 22 14 13.1181 12.5803 1.0569 23 1 12.2931 13.5343 0.2731 24 1 13.9977 13.3345 1.9858 25 1 13.9519 11.7711 0.1322 26 6 9.4352 9.0726 -0.0032 27 6 8.6274 8.2220 -0.7224 28 6 3.4783 1.4315 -0.2397 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3518 1.5730 -2.0139 35 1 0.4125 2.5207 -0.8152 36 1 2.1865 4.1311 -0.5361 37 1 2.3083 3.7692 -2.2893 38 1 4.6613 3.5528 0.6773 39 1 6.2726 5.3707 0.9032 40 1 6.9497 6.4228 -1.8967 41 1 7.2917 6.4559 1.8606 42 1 8.7471 7.9735 3.1297 43 1 12.7221 11.9875 3.8086 44 1 10.0355 9.8090 -0.5167 45 1 8.5937 8.2902 -1.7998 46 1 3.7896 0.5544 -0.8071 47 1 4.0099 1.4698 0.7111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493758132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:30 Heat of formation + Delta-G solvation = -19.100913 kcal Electronic energy + Delta-G solvation = -26112.846519 eV Core-core repulsion = 22261.446470 eV Total energy + Delta-G solvation = -3851.400049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.18375 -39.21715 -38.70470 -36.88712 -34.98518 -33.21341 -32.45682 -32.16698 -30.42830 -29.71848 -28.72536 -27.53319 -25.66081 -23.68682 -23.39367 -22.18786 -21.21559 -21.00498 -20.61922 -19.32423 -18.16816 -17.22014 -17.10439 -16.65435 -16.14984 -15.46594 -15.03715 -14.86272 -14.77279 -14.60746 -14.39641 -14.03833 -13.82359 -13.56190 -13.41042 -13.21746 -13.04855 -13.01774 -12.58990 -12.23615 -11.97565 -11.93028 -11.80322 -11.75082 -11.73667 -11.67746 -11.40319 -11.15664 -11.10207 -11.06644 -10.70253 -10.54428 -9.78188 -9.60024 -9.49867 -9.16066 -8.87173 -8.83294 -8.37992 -7.11250 -6.64903 -4.19889 1.07449 2.13811 2.55982 3.04226 3.05810 3.08213 3.17328 3.53363 3.58795 3.82512 4.15403 4.38076 4.51427 4.64768 4.74359 4.85079 4.88072 4.92576 5.00467 5.02453 5.04764 5.06837 5.21767 5.27637 5.37128 5.40262 5.50256 5.52991 5.55532 5.62724 5.67338 5.68814 5.75745 5.84772 6.01505 6.12262 6.37680 6.41522 6.47741 6.52186 6.57801 6.61997 6.79443 6.91925 7.13168 7.23939 7.28350 7.55954 7.64192 7.80234 8.34644 8.79713 9.46653 10.51602 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.040207 B = 0.001566 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.236273 B =17878.748233 C =18333.937968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.041 3.959 3 N -0.516 5.516 4 C 0.035 3.965 5 C -0.135 4.135 6 C 0.138 3.862 7 H 0.093 0.907 8 N -0.725 5.725 9 C 0.557 3.443 10 O -0.560 6.560 11 C -0.283 4.283 12 C 0.039 3.961 13 C -0.199 4.199 14 C -0.043 4.043 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.162 6.162 18 C -0.394 4.394 19 H 0.097 0.903 20 C 0.042 3.958 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.268 1.268 26 C -0.242 4.242 27 C -0.035 4.035 28 C 0.029 3.971 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.402 0.598 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.275 0.725 44 H 0.131 0.869 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.633 -18.401 -6.172 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.087 4.087 3 N -0.241 5.241 4 C -0.093 4.093 5 C -0.174 4.174 6 C 0.032 3.968 7 H 0.111 0.889 8 N -0.376 5.376 9 C 0.349 3.651 10 O -0.441 6.441 11 C -0.304 4.304 12 C 0.019 3.981 13 C -0.200 4.200 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.063 6.063 18 C -0.469 4.469 19 H 0.114 0.886 20 C -0.164 4.164 21 N -0.484 5.484 22 Si 0.768 3.232 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.261 4.261 27 C -0.053 4.053 28 C -0.099 4.099 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.132 0.868 46 H 0.073 0.927 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.597 -17.976 -6.050 25.873 hybrid contribution 0.763 0.108 -0.728 1.060 sum -16.833 -17.868 -6.778 25.467 Atomic orbital electron populations 1.21847 0.94690 1.01907 1.02619 1.22288 0.96202 0.89251 1.01002 1.64855 1.03899 1.12005 1.43366 1.23273 0.98971 0.94458 0.92598 1.22990 0.93676 0.97851 1.02905 1.21695 0.90725 0.88740 0.95632 0.88895 1.45941 1.45078 1.36291 1.10332 1.18438 0.79175 0.80039 0.87429 1.90770 1.67580 1.71442 1.14259 1.22432 1.05529 1.02517 0.99943 1.22284 0.87924 0.88750 0.99156 1.18465 1.05749 1.02694 0.93117 1.20886 0.95816 0.96588 0.92815 1.20151 1.02759 0.99123 0.99826 1.19617 0.90130 0.88722 0.90519 1.83901 1.44964 1.42535 1.34911 1.21432 1.14980 1.18607 0.91930 0.88593 1.25387 0.97153 0.97762 0.96096 1.70004 1.34102 1.37081 1.07259 0.85717 0.79267 0.79343 0.78829 1.19256 1.20078 1.19245 1.21098 1.06195 1.04935 0.93922 1.20988 0.93089 0.92698 0.98557 1.23152 0.89671 0.96749 1.00370 0.92160 0.91701 0.92531 0.94654 0.90500 0.93530 0.89658 0.90084 0.90387 0.76319 0.85868 0.85974 0.86389 0.86128 0.91549 0.85131 0.86825 0.92667 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.57 37.15 0.36 -0.45 16 2 C 0.04 0.25 5.75 -3.83 -0.02 0.23 16 3 N -0.52 -3.92 5.40 -230.34 -1.24 -5.16 16 4 C 0.03 0.25 5.10 -1.81 -0.01 0.25 16 5 C -0.14 -1.20 6.79 -24.78 -0.17 -1.37 16 6 C 0.14 1.29 3.31 -66.58 -0.22 1.07 16 7 H 0.09 1.01 7.60 -51.93 -0.39 0.62 16 8 N -0.72 -7.43 5.06 -53.93 -0.27 -7.70 16 9 C 0.56 7.67 7.73 -13.04 -0.10 7.57 16 10 O -0.56 -9.60 15.91 5.16 0.08 -9.52 16 11 C -0.28 -3.83 9.41 -37.50 -0.35 -4.19 16 12 C 0.04 0.59 9.45 -37.19 -0.35 0.23 16 13 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 14 C -0.04 -0.73 9.40 -39.14 -0.37 -1.10 16 15 C -0.20 -3.98 9.97 -39.47 -0.39 -4.38 16 16 C 0.17 3.83 6.66 -38.88 -0.26 3.57 16 17 O -0.16 -4.40 9.74 0.75 0.01 -4.40 16 18 C -0.39 -10.46 9.48 30.91 0.29 -10.17 16 19 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 21 N -0.85 -23.80 13.67 55.48 0.76 -23.04 16 22 Si 0.94 19.48 29.55 -169.99 -5.02 14.46 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.24 -5.01 9.14 -39.46 -0.36 -5.37 16 27 C -0.03 -0.62 9.78 -39.15 -0.38 -1.01 16 28 C 0.03 0.22 6.47 -2.76 -0.02 0.20 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.30 6.79 -51.93 -0.35 -0.06 16 32 H 0.04 0.21 7.81 -51.93 -0.41 -0.19 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.32 8.00 -51.93 -0.42 -0.10 16 35 H 0.09 0.58 7.66 -51.93 -0.40 0.18 16 36 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.40 3.24 8.30 -40.82 -0.34 2.90 16 39 H 0.12 1.43 6.06 -52.49 -0.32 1.11 16 40 H 0.12 1.85 7.52 -52.49 -0.39 1.45 16 41 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 42 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 45 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 46 H 0.06 0.38 7.57 -51.93 -0.39 -0.01 16 47 H 0.09 0.62 7.63 -51.93 -0.40 0.22 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -30.57 387.02 -9.72 -40.29 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.79 Total: 7.14 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -3.07 Total: -17.90 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.76 Total: -35.90 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.57 -9.72 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493758132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.190 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds