Wall clock time and date at job start Tue Mar 31 2020 16:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47226 * 2 1 4 4 C 1.48536 * 110.99835 * 307.39277 * 3 2 1 5 5 C 1.55101 * 103.28752 * 200.33309 * 4 3 2 6 6 C 1.54597 * 102.84317 * 37.30344 * 5 4 3 7 7 H 1.09002 * 110.30674 * 97.11921 * 6 5 4 8 8 N 1.46496 * 110.30974 * 219.18594 * 6 5 4 9 9 C 1.34774 * 120.00329 * 272.48858 * 8 6 5 10 10 O 1.21731 * 120.00064 * 359.72528 * 9 8 6 11 11 C 1.46253 * 120.00239 * 179.72455 * 9 8 6 12 12 C 1.35030 * 119.99982 * 179.97438 * 11 9 8 13 13 C 1.46961 * 120.00092 * 179.97438 * 12 11 9 14 14 C 1.40030 * 120.09727 * 359.73250 * 13 12 11 15 15 C 1.37597 * 119.89395 * 179.69167 * 14 13 12 16 16 C 1.39178 * 120.10091 * 0.59709 * 15 14 13 17 17 O 1.35567 * 119.89978 * 179.69175 * 16 15 14 18 18 C 1.34782 * 117.00250 * 174.42317 * 17 16 15 19 19 H 1.08008 * 119.99799 * 5.06728 * 18 17 16 20 20 C 1.38723 * 120.00376 * 185.06136 * 18 17 16 21 21 N 1.31502 * 119.99401 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99991 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47167 * 60.00322 * 22 20 18 24 24 H 1.48503 * 109.46934 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47227 * 299.99861 * 22 20 18 26 26 C 1.39177 * 120.20474 * 359.67689 * 16 15 14 27 27 C 1.37604 * 120.09826 * 0.02562 * 26 16 15 28 28 C 1.47901 * 111.00406 * 189.99897 * 3 2 1 29 29 H 1.09004 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47663 * 300.00561 * 1 2 3 31 31 H 1.09006 * 109.46769 * 60.00720 * 1 2 3 32 32 H 1.09002 * 109.47495 * 239.99741 * 2 1 3 33 33 H 1.09002 * 109.47229 * 119.99870 * 2 1 3 34 34 H 1.09005 * 110.66669 * 318.71410 * 4 3 2 35 35 H 1.09001 * 110.66946 * 81.84308 * 4 3 2 36 36 H 1.09004 * 110.70742 * 279.00163 * 5 4 3 37 37 H 1.08998 * 110.81312 * 155.66134 * 5 4 3 38 38 H 0.96999 * 119.99828 * 92.20758 * 8 6 5 39 39 H 1.08000 * 120.00433 * 359.97438 * 11 9 8 40 40 H 1.08000 * 119.99585 * 359.97438 * 12 11 9 41 41 H 1.07998 * 120.05301 * 359.97438 * 14 13 12 42 42 H 1.07997 * 119.94988 * 180.31407 * 15 14 13 43 43 H 0.97005 * 119.99821 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.95066 * 180.02562 * 26 16 15 45 45 H 1.08004 * 120.04677 * 180.02562 * 27 26 16 46 46 H 1.09001 * 109.91805 * 26.48702 * 28 3 2 47 47 H 1.09002 * 109.91516 * 265.19345 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4031 2.1675 -1.1017 5 6 2.3789 3.3596 -1.2817 6 6 3.7623 2.7091 -1.0512 7 1 4.2251 2.4563 -2.0051 8 7 4.6287 3.6127 -0.2903 9 6 5.3761 4.5310 -0.9342 10 8 5.3350 4.6062 -2.1485 11 6 6.2364 5.4371 -0.1741 12 6 6.9856 6.3567 -0.8193 13 6 7.8497 7.2676 -0.0555 14 6 7.8935 7.1874 1.3418 15 6 8.7088 8.0380 2.0523 16 6 9.4798 8.9854 1.3851 17 8 10.2769 9.8256 2.0897 18 6 11.0840 10.6407 1.3820 19 1 11.0174 10.6638 0.3042 20 6 12.0001 11.4502 2.0378 21 7 12.0813 11.4218 3.3500 22 14 13.1181 12.5803 1.0569 23 1 12.2931 13.5343 0.2731 24 1 13.9977 13.3345 1.9858 25 1 13.9519 11.7711 0.1322 26 6 9.4352 9.0726 -0.0032 27 6 8.6274 8.2220 -0.7224 28 6 3.4783 1.4315 -0.2397 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3518 1.5730 -2.0139 35 1 0.4125 2.5207 -0.8152 36 1 2.1865 4.1311 -0.5361 37 1 2.3083 3.7692 -2.2893 38 1 4.6613 3.5528 0.6773 39 1 6.2726 5.3707 0.9032 40 1 6.9497 6.4228 -1.8967 41 1 7.2917 6.4559 1.8606 42 1 8.7471 7.9735 3.1297 43 1 12.7221 11.9875 3.8086 44 1 10.0355 9.8090 -0.5167 45 1 8.5937 8.2902 -1.7998 46 1 3.7896 0.5544 -0.8071 47 1 4.0099 1.4698 0.7111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493758132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:29 Heat of formation + Delta-G solvation = -39.207533 kcal Electronic energy + Delta-G solvation = -26113.718407 eV Core-core repulsion = 22261.446470 eV Total energy + Delta-G solvation = -3852.271938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.11422 -40.78891 -39.62050 -38.46921 -35.82767 -34.72765 -34.00951 -33.04654 -31.95985 -30.30918 -29.94191 -28.49972 -27.45192 -24.76348 -24.15181 -23.70762 -22.40250 -21.64183 -21.49048 -20.67084 -19.73667 -18.83322 -18.34017 -17.47913 -16.88718 -16.51553 -16.30757 -16.17863 -15.95568 -15.67906 -15.58694 -15.46517 -15.29772 -14.80017 -14.58922 -14.13134 -14.04980 -13.88651 -13.66281 -13.58513 -13.31543 -13.15119 -12.89985 -12.67384 -12.59795 -12.49876 -12.36917 -12.29285 -12.21764 -12.13473 -11.91182 -11.81217 -11.21123 -11.10005 -10.95370 -10.57072 -10.07205 -9.88573 -9.42222 -8.67329 -8.51511 -6.17825 -0.23719 0.59182 1.14473 1.36179 1.47689 1.51893 2.15971 2.24611 2.37449 2.87060 2.98836 3.18490 3.43123 3.49217 3.72706 3.83595 3.95645 4.08769 4.09383 4.22688 4.23775 4.29073 4.32787 4.37880 4.39203 4.48878 4.60053 4.65828 4.67226 4.76992 4.86150 4.95358 4.96256 4.97902 5.03565 5.06622 5.17329 5.20373 5.28905 5.31108 5.34686 5.54801 5.60536 5.64562 5.82283 5.85123 5.97684 6.04411 6.11251 6.61663 6.92680 7.29733 7.69716 8.70236 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.040207 B = 0.001566 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.236273 B =17878.748233 C =18333.937968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 N -0.525 5.525 4 C 0.041 3.959 5 C -0.133 4.133 6 C 0.135 3.865 7 H 0.077 0.923 8 N -0.706 5.706 9 C 0.552 3.448 10 O -0.594 6.594 11 C -0.245 4.245 12 C 0.015 3.985 13 C -0.171 4.171 14 C -0.038 4.038 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.419 4.419 19 H 0.105 0.895 20 C -0.017 4.017 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.249 4.249 27 C -0.041 4.041 28 C 0.035 3.965 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.416 0.584 39 H 0.152 0.848 40 H 0.124 0.876 41 H 0.160 0.840 42 H 0.123 0.877 43 H 0.275 0.725 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.062 0.938 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 -21.077 -7.437 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 N -0.250 5.250 4 C -0.087 4.087 5 C -0.173 4.173 6 C 0.029 3.971 7 H 0.096 0.904 8 N -0.358 5.358 9 C 0.343 3.657 10 O -0.477 6.477 11 C -0.266 4.266 12 C -0.005 4.005 13 C -0.171 4.171 14 C -0.055 4.055 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.494 4.494 19 H 0.123 0.877 20 C -0.216 4.216 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.268 4.268 27 C -0.059 4.059 28 C -0.093 4.093 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.254 0.746 39 H 0.169 0.831 40 H 0.142 0.858 41 H 0.178 0.822 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.142 0.858 45 H 0.162 0.838 46 H 0.081 0.919 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.939 -20.722 -7.325 29.675 hybrid contribution 0.987 0.433 -0.514 1.194 sum -18.952 -20.290 -7.839 28.849 Atomic orbital electron populations 1.21825 0.94078 1.02565 1.02311 1.22348 0.96728 0.88461 1.01359 1.64889 1.03815 1.12922 1.43380 1.23234 0.98772 0.93795 0.92909 1.22928 0.93860 0.98319 1.02148 1.21767 0.90518 0.89480 0.95297 0.90446 1.45846 1.43770 1.35011 1.11150 1.18533 0.79560 0.80596 0.86974 1.90775 1.68669 1.72415 1.15849 1.22771 1.02517 1.00036 1.01253 1.22166 0.89224 0.89773 0.99292 1.18787 1.03789 1.01243 0.93329 1.21292 0.95070 0.96283 0.92891 1.20423 1.02800 0.99006 1.00358 1.20198 0.90686 0.89613 0.91821 1.83882 1.47467 1.45012 1.36133 1.21865 1.15742 1.19271 0.92566 0.87740 1.26596 0.98538 0.99288 0.97167 1.70142 1.36135 1.39466 1.09231 0.84656 0.77125 0.77199 0.77344 1.18127 1.19575 1.18152 1.21201 1.06784 1.05524 0.93307 1.21317 0.92357 0.92080 1.00113 1.23108 0.89946 0.95757 1.00502 0.91091 0.92262 0.92537 0.94339 0.90070 0.93016 0.89020 0.90660 0.91324 0.74629 0.83077 0.85789 0.82218 0.85929 0.91601 0.85762 0.83823 0.91938 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.57 71.98 0.69 -0.53 16 2 C 0.04 0.37 5.75 86.30 0.50 0.87 16 3 N -0.52 -6.48 5.40 -882.67 -4.76 -11.24 16 4 C 0.04 0.50 5.10 86.71 0.44 0.94 16 5 C -0.13 -2.10 6.79 31.86 0.22 -1.88 16 6 C 0.14 2.19 3.31 45.87 0.15 2.34 16 7 H 0.08 1.55 7.60 -2.39 -0.02 1.53 16 8 N -0.71 -11.97 5.06 -442.74 -2.24 -14.22 16 9 C 0.55 13.29 7.73 86.33 0.67 13.95 16 10 O -0.59 -18.97 15.91 -4.45 -0.07 -19.04 16 11 C -0.25 -5.51 9.41 23.62 0.22 -5.28 16 12 C 0.02 0.41 9.45 23.82 0.23 0.63 16 13 C -0.17 -5.29 5.87 -20.13 -0.12 -5.41 16 14 C -0.04 -1.17 9.40 22.55 0.21 -0.96 16 15 C -0.21 -8.23 9.97 22.34 0.22 -8.01 16 16 C 0.13 6.15 6.66 22.72 0.15 6.30 16 17 O -0.22 -12.76 9.74 -20.24 -0.20 -12.96 16 18 C -0.42 -23.60 9.48 67.94 0.64 -22.95 16 19 H 0.11 5.37 5.18 -2.91 -0.02 5.36 16 20 C -0.02 -0.94 5.49 84.86 0.47 -0.47 16 21 N -0.91 -54.32 13.67 21.62 0.30 -54.03 16 22 Si 1.02 41.45 29.55 68.60 2.03 43.48 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 C -0.25 -10.45 9.14 22.35 0.20 -10.25 16 27 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 28 C 0.04 0.42 6.47 86.44 0.56 0.98 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.46 6.79 -2.38 -0.02 0.44 16 32 H 0.04 0.36 7.81 -2.39 -0.02 0.34 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.59 8.00 -2.38 -0.02 0.57 16 35 H 0.09 1.02 7.66 -2.39 -0.02 1.00 16 36 H 0.07 1.27 8.06 -2.38 -0.02 1.26 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.42 4.84 8.30 -92.71 -0.77 4.07 16 39 H 0.15 2.56 6.06 -2.91 -0.02 2.54 16 40 H 0.12 3.36 7.52 -2.91 -0.02 3.33 16 41 H 0.16 3.58 6.16 -2.91 -0.02 3.56 16 42 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 43 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 44 H 0.12 5.27 5.62 -2.91 -0.02 5.25 16 45 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 46 H 0.06 0.68 7.57 -2.39 -0.02 0.66 16 47 H 0.10 1.00 7.63 -2.39 -0.02 0.98 16 Total: -1.00 -71.46 387.02 0.94 -70.52 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.22 Total: 28.37 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 5.67 Total: -30.89 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -6.71 Total: -79.49 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.27 Total: -32.00 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -71.46 0.94 -70.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493758132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.311 kcal (2) G-P(sol) polarization free energy of solvation -71.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds