Wall clock time and date at job start Tue Mar 31 2020 15:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46782 * 2 1 4 4 C 1.50694 * 109.47227 * 240.00327 * 2 1 3 5 5 H 1.08003 * 120.00017 * 245.46604 * 4 2 1 6 6 C 1.37873 * 120.00273 * 65.46338 * 4 2 1 7 7 N 1.31515 * 120.00200 * 5.81325 * 6 4 2 8 8 Si 1.86801 * 120.00408 * 185.80644 * 6 4 2 9 9 H 1.48498 * 109.47185 * 94.99420 * 8 6 4 10 10 H 1.48499 * 109.47481 * 214.99924 * 8 6 4 11 11 H 1.48505 * 109.46883 * 334.99827 * 8 6 4 12 12 N 1.46499 * 109.47396 * 119.99869 * 2 1 3 13 13 C 1.46503 * 119.99746 * 60.00005 * 12 2 1 14 14 C 1.34774 * 120.00381 * 240.00091 * 12 2 1 15 15 O 1.21281 * 120.00110 * 4.98198 * 14 12 2 16 16 C 1.50697 * 120.00306 * 184.98093 * 14 12 2 17 17 C 1.50702 * 109.60234 * 308.00667 * 16 14 12 18 18 C 1.38231 * 120.00307 * 128.34349 * 17 16 14 19 19 C 1.38237 * 120.00092 * 180.28006 * 18 17 16 20 20 C 1.38237 * 119.99818 * 359.46791 * 19 18 17 21 21 C 1.38236 * 119.99965 * 0.25073 * 20 19 18 22 22 C 1.38230 * 120.00113 * 0.02562 * 21 20 19 23 23 C 1.53345 * 109.60622 * 68.32559 * 16 14 12 24 24 C 1.53075 * 108.42230 * 52.39062 * 23 16 14 25 25 C 1.50181 * 109.89013 * 48.90342 * 24 23 16 26 26 O 1.21277 * 118.24936 * 162.39802 * 25 24 23 27 27 N 1.33353 * 123.50632 * 342.41166 * 25 24 23 28 28 C 1.45757 * 124.10827 * 2.23349 * 27 25 24 29 29 H 1.08994 * 109.47044 * 64.65306 * 1 2 3 30 30 H 1.08998 * 109.46852 * 184.65938 * 1 2 3 31 31 H 1.09008 * 109.47064 * 304.65605 * 1 2 3 32 32 H 0.96993 * 120.00989 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47104 * 269.47632 * 13 12 2 34 34 H 1.08995 * 109.47067 * 29.47383 * 13 12 2 35 35 H 1.09003 * 109.46822 * 149.47437 * 13 12 2 36 36 H 1.08004 * 120.00128 * 0.02562 * 18 17 16 37 37 H 1.07998 * 120.00333 * 179.73765 * 19 18 17 38 38 H 1.08007 * 120.00029 * 180.27839 * 20 19 18 39 39 H 1.08003 * 120.00087 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.00424 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.67749 * 172.12492 * 23 16 14 42 42 H 1.08999 * 109.67527 * 292.62344 * 23 16 14 43 43 H 1.08994 * 109.40344 * 169.02649 * 24 23 16 44 44 H 1.08994 * 109.40334 * 288.86028 * 24 23 16 45 45 H 0.96999 * 117.94829 * 182.22627 * 27 25 24 46 46 H 1.09005 * 109.29746 * 220.61178 * 28 27 25 47 47 H 1.09001 * 109.30336 * 101.23089 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.5785 -1.6370 -1.1339 6 6 1.7947 -0.1772 -2.4795 7 7 1.2313 1.0057 -2.5934 8 14 2.2730 -1.1350 -4.0104 9 1 1.0990 -1.8994 -4.5029 10 1 2.7264 -0.1912 -5.0633 11 1 3.3738 -2.0760 -3.6816 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0120 1.1486 1.9393 16 6 3.3879 -0.7746 3.2543 17 6 2.3014 -1.5191 3.9868 18 6 2.4499 -2.8659 4.2602 19 6 1.4508 -3.5501 4.9270 20 6 0.3080 -2.8849 5.3301 21 6 0.1621 -1.5367 5.0619 22 6 1.1587 -0.8538 4.3900 23 6 4.4440 -1.7673 2.7537 24 6 5.4332 -1.0125 1.8622 25 6 5.8929 0.2387 2.5541 26 8 6.9004 0.7804 2.1513 27 7 5.2525 0.7857 3.5881 28 6 4.0599 0.2177 4.2041 29 1 -0.3633 0.4399 -0.9287 30 1 -0.3633 -1.0243 0.0835 31 1 -0.3634 0.5844 0.8454 32 1 1.0637 1.3807 -3.4721 33 1 0.7426 -2.1443 2.0073 34 1 1.5204 -2.5945 0.4709 35 1 2.4671 -2.5842 1.9782 36 1 3.3447 -3.3847 3.9492 37 1 1.5648 -4.6033 5.1369 38 1 -0.4707 -3.4184 5.8551 39 1 -0.7305 -1.0168 5.3772 40 1 1.0449 0.1996 4.1808 41 1 4.9722 -2.2006 3.6030 42 1 3.9614 -2.5582 2.1795 43 1 6.2936 -1.6491 1.6561 44 1 4.9459 -0.7476 0.9239 45 1 5.6025 1.6134 3.9532 46 1 3.3604 1.0194 4.4414 47 1 4.3393 -0.2964 5.1237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565182957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:46 Heat of formation + Delta-G solvation = -32.225221 kcal Electronic energy + Delta-G solvation = -30568.703952 eV Core-core repulsion = 26716.734790 eV Total energy + Delta-G solvation = -3851.969162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42793 -39.21504 -38.39686 -36.15460 -35.32182 -33.65953 -32.50460 -31.70975 -30.92217 -29.41733 -28.39708 -26.22714 -25.23455 -24.81746 -23.98142 -22.32880 -21.91451 -21.00046 -19.51039 -17.89801 -17.60494 -16.57879 -16.36858 -16.27642 -15.85566 -15.61157 -15.41717 -14.73026 -14.56309 -14.43829 -14.34060 -13.82611 -13.61179 -13.42618 -13.29532 -13.16715 -12.72822 -12.52805 -12.26109 -12.16501 -11.91000 -11.67433 -11.49803 -11.40039 -11.15825 -11.06785 -10.91257 -10.90537 -10.74701 -10.72373 -10.31063 -10.20550 -9.49989 -9.28687 -9.17724 -8.97763 -8.88248 -8.53027 -8.42968 -7.62606 -6.10629 -4.17366 1.22482 1.33046 2.95754 3.17660 3.25177 3.33349 3.34908 3.52878 3.66627 3.79586 4.34993 4.40311 4.58842 4.59612 4.82932 4.91958 4.92756 4.98019 5.06995 5.20672 5.23211 5.37529 5.39922 5.44645 5.50111 5.60979 5.67318 5.82953 5.86067 5.95857 5.99201 6.04495 6.12233 6.35922 6.39314 6.44395 6.48880 6.66376 6.75082 6.89310 6.97052 6.98859 7.32412 7.49522 7.55062 7.66790 7.90646 8.13397 8.46555 8.48430 8.79479 8.97808 9.48810 10.96373 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.005502 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.742790 B = 5087.650995 C = 6546.839102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.258 3.742 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.580 5.580 13 C 0.072 3.928 14 C 0.516 3.484 15 O -0.540 6.540 16 C -0.058 4.058 17 C -0.062 4.062 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.142 4.142 25 C 0.530 3.470 26 O -0.564 6.564 27 N -0.706 5.706 28 C 0.144 3.856 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.399 0.601 46 H 0.082 0.918 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -10.015 17.520 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.158 3.842 3 H 0.085 0.915 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.072 4.072 14 C 0.301 3.699 15 O -0.418 6.418 16 C -0.062 4.062 17 C -0.063 4.063 18 C -0.134 4.134 19 C -0.135 4.135 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.153 4.153 24 C -0.181 4.181 25 C 0.318 3.682 26 O -0.444 6.444 27 N -0.357 5.357 28 C 0.019 3.981 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.234 0.766 46 H 0.101 0.899 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.030 -9.180 16.953 19.279 hybrid contribution -0.045 -0.268 -0.829 0.873 sum -0.074 -9.448 16.123 18.688 Atomic orbital electron populations 1.21993 0.98554 0.98611 1.00625 1.18948 0.90553 0.94849 0.79835 0.91479 1.21271 1.36487 1.08611 0.90368 0.92199 1.24893 0.95054 0.94676 0.98976 1.69943 1.42742 1.15434 1.24056 0.86539 0.78660 0.79807 0.82764 1.20651 1.21118 1.19828 1.48101 1.48261 1.11541 1.23113 1.22064 0.99420 0.83517 1.02175 1.19801 0.79715 0.87248 0.83095 1.90703 1.60811 1.15058 1.75271 1.20169 0.94662 0.96284 0.95057 1.19337 0.94710 0.93953 0.98285 1.21115 0.99586 0.93505 0.99147 1.21085 0.93977 0.99736 0.98737 1.21145 0.97855 0.94658 1.00287 1.21102 0.98693 0.94635 0.98705 1.21031 0.93268 1.00291 0.97689 1.21977 0.95491 0.97689 1.00190 1.21708 1.00989 0.94733 1.00708 1.19975 0.82767 0.86286 0.79171 1.90719 1.26250 1.63601 1.63804 1.45142 1.28608 1.28020 1.33915 1.21088 0.86866 0.96394 0.93745 0.90303 0.95114 0.96741 0.92661 0.93799 0.90525 0.91597 0.85414 0.86037 0.86270 0.86077 0.86088 0.90034 0.88774 0.87868 0.87052 0.76574 0.89940 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.15 37.16 0.34 -2.88 16 2 C 0.26 6.36 2.50 -69.09 -0.17 6.18 16 3 H 0.07 1.97 6.89 -51.93 -0.36 1.61 16 4 C -0.53 -13.84 8.01 -34.44 -0.28 -14.12 16 5 H 0.06 1.53 7.15 -52.48 -0.38 1.15 16 6 C 0.07 1.81 5.22 -17.82 -0.09 1.72 16 7 N -0.88 -25.11 11.98 55.43 0.66 -24.44 16 8 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.58 -11.50 2.75 -175.27 -0.48 -11.98 16 13 C 0.07 1.15 7.58 59.85 0.45 1.61 16 14 C 0.52 9.76 4.15 -10.99 -0.05 9.71 16 15 O -0.54 -12.47 14.53 5.56 0.08 -12.39 16 16 C -0.06 -0.78 0.35 -156.68 -0.05 -0.84 16 17 C -0.06 -0.72 2.47 -104.62 -0.26 -0.98 16 18 C -0.12 -1.10 7.56 -39.58 -0.30 -1.40 16 19 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 21 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.10 -1.26 8.56 -39.58 -0.34 -1.59 16 23 C -0.12 -1.40 3.40 -26.51 -0.09 -1.49 16 24 C -0.14 -2.17 5.51 -28.10 -0.15 -2.33 16 25 C 0.53 9.30 7.19 -11.87 -0.09 9.22 16 26 O -0.56 -12.02 17.78 5.56 0.10 -11.92 16 27 N -0.71 -10.38 4.88 -61.38 -0.30 -10.68 16 28 C 0.14 1.80 5.24 -4.48 -0.02 1.77 16 29 H 0.08 2.01 6.66 -51.93 -0.35 1.67 16 30 H 0.03 0.65 7.52 -51.93 -0.39 0.26 16 31 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.04 0.67 7.43 -51.93 -0.39 0.29 16 34 H 0.08 1.32 6.93 -51.93 -0.36 0.96 16 35 H 0.07 0.87 2.42 -51.93 -0.13 0.74 16 36 H 0.13 1.01 5.99 -52.48 -0.31 0.69 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.12 1.60 7.83 -52.49 -0.41 1.19 16 41 H 0.08 0.75 7.62 -51.93 -0.40 0.36 16 42 H 0.09 1.07 5.03 -51.93 -0.26 0.81 16 43 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.11 2.09 7.43 -51.93 -0.39 1.71 16 45 H 0.40 5.41 8.80 -40.82 -0.36 5.05 16 46 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 47 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -33.49 362.34 -8.34 -41.84 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.55 Total: 8.14 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.29 Total: 0.13 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.12 Total: -47.10 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.18 Total: -24.31 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.49 -8.34 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565182957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.610 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds