Wall clock time and date at job start Tue Mar 31 2020 15:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46782 * 2 1 4 4 C 1.50694 * 109.47227 * 240.00327 * 2 1 3 5 5 H 1.08003 * 120.00017 * 245.46604 * 4 2 1 6 6 C 1.37873 * 120.00273 * 65.46338 * 4 2 1 7 7 N 1.31515 * 120.00200 * 5.81325 * 6 4 2 8 8 Si 1.86801 * 120.00408 * 185.80644 * 6 4 2 9 9 H 1.48498 * 109.47185 * 94.99420 * 8 6 4 10 10 H 1.48499 * 109.47481 * 214.99924 * 8 6 4 11 11 H 1.48505 * 109.46883 * 334.99827 * 8 6 4 12 12 N 1.46499 * 109.47396 * 119.99869 * 2 1 3 13 13 C 1.46503 * 119.99746 * 60.00005 * 12 2 1 14 14 C 1.34774 * 120.00381 * 240.00091 * 12 2 1 15 15 O 1.21281 * 120.00110 * 4.98198 * 14 12 2 16 16 C 1.50697 * 120.00306 * 184.98093 * 14 12 2 17 17 C 1.50702 * 109.60234 * 308.00667 * 16 14 12 18 18 C 1.38231 * 120.00307 * 128.34349 * 17 16 14 19 19 C 1.38237 * 120.00092 * 180.28006 * 18 17 16 20 20 C 1.38237 * 119.99818 * 359.46791 * 19 18 17 21 21 C 1.38236 * 119.99965 * 0.25073 * 20 19 18 22 22 C 1.38230 * 120.00113 * 0.02562 * 21 20 19 23 23 C 1.53345 * 109.60622 * 68.32559 * 16 14 12 24 24 C 1.53075 * 108.42230 * 52.39062 * 23 16 14 25 25 C 1.50181 * 109.89013 * 48.90342 * 24 23 16 26 26 O 1.21277 * 118.24936 * 162.39802 * 25 24 23 27 27 N 1.33353 * 123.50632 * 342.41166 * 25 24 23 28 28 C 1.45757 * 124.10827 * 2.23349 * 27 25 24 29 29 H 1.08994 * 109.47044 * 64.65306 * 1 2 3 30 30 H 1.08998 * 109.46852 * 184.65938 * 1 2 3 31 31 H 1.09008 * 109.47064 * 304.65605 * 1 2 3 32 32 H 0.96993 * 120.00989 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47104 * 269.47632 * 13 12 2 34 34 H 1.08995 * 109.47067 * 29.47383 * 13 12 2 35 35 H 1.09003 * 109.46822 * 149.47437 * 13 12 2 36 36 H 1.08004 * 120.00128 * 0.02562 * 18 17 16 37 37 H 1.07998 * 120.00333 * 179.73765 * 19 18 17 38 38 H 1.08007 * 120.00029 * 180.27839 * 20 19 18 39 39 H 1.08003 * 120.00087 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.00424 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.67749 * 172.12492 * 23 16 14 42 42 H 1.08999 * 109.67527 * 292.62344 * 23 16 14 43 43 H 1.08994 * 109.40344 * 169.02649 * 24 23 16 44 44 H 1.08994 * 109.40334 * 288.86028 * 24 23 16 45 45 H 0.96999 * 117.94829 * 182.22627 * 27 25 24 46 46 H 1.09005 * 109.29746 * 220.61178 * 28 27 25 47 47 H 1.09001 * 109.30336 * 101.23089 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.5785 -1.6370 -1.1339 6 6 1.7947 -0.1772 -2.4795 7 7 1.2313 1.0057 -2.5934 8 14 2.2730 -1.1350 -4.0104 9 1 1.0990 -1.8994 -4.5029 10 1 2.7264 -0.1912 -5.0633 11 1 3.3738 -2.0760 -3.6816 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0120 1.1486 1.9393 16 6 3.3879 -0.7746 3.2543 17 6 2.3014 -1.5191 3.9868 18 6 2.4499 -2.8659 4.2602 19 6 1.4508 -3.5501 4.9270 20 6 0.3080 -2.8849 5.3301 21 6 0.1621 -1.5367 5.0619 22 6 1.1587 -0.8538 4.3900 23 6 4.4440 -1.7673 2.7537 24 6 5.4332 -1.0125 1.8622 25 6 5.8929 0.2387 2.5541 26 8 6.9004 0.7804 2.1513 27 7 5.2525 0.7857 3.5881 28 6 4.0599 0.2177 4.2041 29 1 -0.3633 0.4399 -0.9287 30 1 -0.3633 -1.0243 0.0835 31 1 -0.3634 0.5844 0.8454 32 1 1.0637 1.3807 -3.4721 33 1 0.7426 -2.1443 2.0073 34 1 1.5204 -2.5945 0.4709 35 1 2.4671 -2.5842 1.9782 36 1 3.3447 -3.3847 3.9492 37 1 1.5648 -4.6033 5.1369 38 1 -0.4707 -3.4184 5.8551 39 1 -0.7305 -1.0168 5.3772 40 1 1.0449 0.1996 4.1808 41 1 4.9722 -2.2006 3.6030 42 1 3.9614 -2.5582 2.1795 43 1 6.2936 -1.6491 1.6561 44 1 4.9459 -0.7476 0.9239 45 1 5.6025 1.6134 3.9532 46 1 3.3604 1.0194 4.4414 47 1 4.3393 -0.2964 5.1237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565182957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:45 Heat of formation + Delta-G solvation = -55.039295 kcal Electronic energy + Delta-G solvation = -30569.693245 eV Core-core repulsion = 26716.734790 eV Total energy + Delta-G solvation = -3852.958454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.62017 -40.43722 -39.61302 -37.57806 -36.88250 -35.12362 -34.16393 -32.73234 -31.69528 -31.23683 -29.41848 -27.62285 -27.29012 -25.92533 -25.18267 -23.46630 -22.87905 -22.20266 -21.05059 -19.18086 -18.79787 -18.34700 -17.73308 -17.47320 -17.11296 -16.99104 -16.82253 -16.25657 -15.81946 -15.49106 -15.43243 -15.04376 -14.82633 -14.67207 -14.47530 -14.37556 -14.13591 -13.76599 -13.68335 -13.52065 -13.35098 -13.03789 -12.93503 -12.77309 -12.66078 -12.58054 -12.42633 -12.26820 -12.25334 -12.11709 -11.82509 -11.65610 -11.21979 -10.84002 -10.67085 -10.50641 -10.09018 -9.70695 -9.48762 -9.27861 -8.17020 -6.31438 0.45371 0.59693 1.39680 1.41438 1.51116 1.58760 1.76760 2.27676 2.34394 2.46909 2.89307 3.12984 3.32175 3.50436 3.54745 3.67705 3.82227 4.13848 4.17719 4.25460 4.30821 4.34686 4.41982 4.54707 4.58677 4.69788 4.70987 4.74141 4.74888 4.80639 4.84920 4.88685 4.96069 5.01927 5.11952 5.13639 5.24510 5.46324 5.52070 5.66488 5.66930 5.70889 5.73981 5.77928 6.00389 6.12640 6.18057 6.29872 6.77890 6.84587 7.16526 7.31812 7.48232 8.89481 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.005502 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.742790 B = 5087.650995 C = 6546.839102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.264 3.736 3 H 0.007 0.993 4 C -0.533 4.533 5 H 0.067 0.933 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.292 1.292 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.074 3.926 14 C 0.510 3.490 15 O -0.595 6.595 16 C -0.046 4.046 17 C -0.074 4.074 18 C -0.111 4.111 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.110 4.110 24 C -0.140 4.140 25 C 0.520 3.480 26 O -0.614 6.614 27 N -0.699 5.699 28 C 0.140 3.860 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.069 0.931 45 H 0.402 0.598 46 H 0.074 0.926 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 -14.572 19.736 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.162 3.838 3 H 0.025 0.975 4 C -0.572 4.572 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.218 1.218 11 H -0.188 1.188 12 N -0.315 5.315 13 C -0.068 4.068 14 C 0.298 3.702 15 O -0.477 6.477 16 C -0.049 4.049 17 C -0.075 4.075 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.179 4.179 25 C 0.308 3.692 26 O -0.498 6.498 27 N -0.348 5.348 28 C 0.016 3.984 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.088 0.912 45 H 0.237 0.763 46 H 0.092 0.908 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.112 -13.786 19.223 23.656 hybrid contribution -0.110 1.212 -1.413 1.865 sum -0.222 -12.574 17.810 21.803 Atomic orbital electron populations 1.21773 0.97613 0.99562 0.99296 1.18464 0.91179 0.92286 0.81874 0.97499 1.21584 1.35962 1.08630 0.91017 0.91476 1.25759 0.95177 0.95447 1.02218 1.70099 1.44264 1.17141 1.24550 0.85510 0.78867 0.78408 0.78696 1.19304 1.21798 1.18778 1.48007 1.48525 1.13047 1.21927 1.22248 1.01257 0.81080 1.02203 1.20806 0.78544 0.86888 0.83961 1.90671 1.62426 1.17833 1.76776 1.20059 0.95575 0.96494 0.92803 1.19148 0.93897 0.94910 0.99515 1.21373 1.00813 0.92143 0.98555 1.21470 0.93021 1.01140 0.97213 1.21490 0.98687 0.93923 0.99410 1.21256 0.98537 0.95603 0.98625 1.20938 0.94627 0.99340 0.99306 1.22105 0.94366 0.96869 1.01306 1.21684 1.02480 0.94528 0.99246 1.20451 0.82343 0.86943 0.79416 1.90683 1.28575 1.65167 1.65351 1.45203 1.28658 1.27870 1.33046 1.21372 0.85734 0.96489 0.94807 0.93058 0.93034 0.96336 0.92850 0.92723 0.91603 0.88181 0.82812 0.82907 0.83882 0.85387 0.88902 0.85356 0.87425 0.85573 0.91244 0.76274 0.90796 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 9.15 71.98 0.66 -5.27 16 2 C 0.26 13.62 2.50 44.24 0.11 13.73 16 3 H 0.01 0.44 6.89 -2.38 -0.02 0.43 16 4 C -0.53 -28.60 8.01 25.60 0.21 -28.39 16 5 H 0.07 3.42 7.15 -2.91 -0.02 3.40 16 6 C 0.01 0.74 5.22 84.65 0.44 1.19 16 7 N -0.92 -54.69 11.98 21.45 0.26 -54.43 16 8 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 N -0.59 -23.59 2.75 -826.81 -2.28 -25.87 16 13 C 0.07 2.23 7.58 127.77 0.97 3.20 16 14 C 0.51 19.78 4.15 87.66 0.36 20.14 16 15 O -0.60 -29.41 14.53 -3.03 -0.04 -29.45 16 16 C -0.05 -1.16 0.35 -53.59 -0.02 -1.18 16 17 C -0.07 -1.49 2.47 -19.86 -0.05 -1.54 16 18 C -0.11 -1.52 7.56 22.27 0.17 -1.35 16 19 C -0.11 -1.27 10.05 22.27 0.22 -1.04 16 20 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 21 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 22 C -0.12 -2.80 8.56 22.27 0.19 -2.61 16 23 C -0.11 -2.26 3.40 30.73 0.10 -2.15 16 24 C -0.14 -4.17 5.51 29.71 0.16 -4.01 16 25 C 0.52 18.45 7.19 87.72 0.63 19.08 16 26 O -0.61 -27.09 17.78 -3.02 -0.05 -27.14 16 27 N -0.70 -20.49 4.88 -467.30 -2.28 -22.78 16 28 C 0.14 3.29 5.24 86.49 0.45 3.75 16 29 H 0.05 2.73 6.66 -2.39 -0.02 2.71 16 30 H 0.05 2.19 7.52 -2.39 -0.02 2.17 16 31 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.05 1.54 7.43 -2.39 -0.02 1.52 16 34 H 0.07 2.14 6.93 -2.39 -0.02 2.12 16 35 H 0.10 2.27 2.42 -2.39 -0.01 2.27 16 36 H 0.15 1.31 5.99 -2.91 -0.02 1.29 16 37 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.09 2.57 7.83 -2.91 -0.02 2.54 16 41 H 0.13 1.57 7.62 -2.39 -0.02 1.56 16 42 H 0.11 1.95 5.03 -2.39 -0.01 1.94 16 43 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.07 2.70 7.43 -2.39 -0.02 2.68 16 45 H 0.40 11.14 8.80 -92.71 -0.82 10.32 16 46 H 0.07 1.89 7.95 -2.38 -0.02 1.88 16 47 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 Total: -1.00 -80.52 362.34 2.88 -77.65 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.19 Total: 26.49 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.06 Total: 10.24 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -4.30 Total: -103.08 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.10 Total: -56.60 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -80.52 2.88 -77.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565182957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.607 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds