Wall clock time and date at job start Tue Mar 31 2020 15:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46996 * 2 1 4 4 C 1.50698 * 109.46883 * 120.00231 * 2 1 3 5 5 H 1.08007 * 119.99939 * 120.00581 * 4 2 1 6 6 C 1.37878 * 120.00349 * 299.99703 * 4 2 1 7 7 N 1.31512 * 120.00003 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99754 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46832 * 89.99972 * 8 6 4 10 10 H 1.48503 * 109.47015 * 209.99792 * 8 6 4 11 11 H 1.48503 * 109.47459 * 330.00003 * 8 6 4 12 12 N 1.46503 * 109.47017 * 240.00181 * 2 1 3 13 13 C 1.46495 * 119.99864 * 300.00179 * 12 2 1 14 14 C 1.34776 * 119.99820 * 119.99801 * 12 2 1 15 15 O 1.21289 * 119.99900 * 5.18957 * 14 12 2 16 16 C 1.50695 * 120.00018 * 185.18724 * 14 12 2 17 17 C 1.50696 * 109.60325 * 294.15662 * 16 14 12 18 18 C 1.38239 * 119.99883 * 126.93442 * 17 16 14 19 19 C 1.38240 * 119.99826 * 179.81250 * 18 17 16 20 20 C 1.38231 * 120.00056 * 0.42192 * 19 18 17 21 21 C 1.38234 * 119.99921 * 359.80888 * 20 19 18 22 22 C 1.38231 * 120.00236 * 307.21319 * 17 16 14 23 23 C 1.53349 * 109.60314 * 54.48386 * 16 14 12 24 24 C 1.53062 * 108.42578 * 52.22412 * 23 16 14 25 25 C 1.50179 * 109.88959 * 48.90315 * 24 23 16 26 26 O 1.21286 * 118.24563 * 162.39857 * 25 24 23 27 27 N 1.33353 * 123.51123 * 342.41346 * 25 24 23 28 28 C 1.45758 * 124.10377 * 2.22450 * 27 25 24 29 29 H 1.09000 * 109.46508 * 299.99561 * 1 2 3 30 30 H 1.08997 * 109.47193 * 59.99530 * 1 2 3 31 31 H 1.09001 * 109.46996 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00420 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47154 * 88.97451 * 13 12 2 34 34 H 1.08992 * 109.47454 * 328.97004 * 13 12 2 35 35 H 1.09002 * 109.47064 * 208.97103 * 13 12 2 36 36 H 1.07995 * 120.00074 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.99883 * 180.21114 * 19 18 17 38 38 H 1.07998 * 120.00229 * 179.79595 * 20 19 18 39 39 H 1.08001 * 119.99956 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.00193 * 359.97438 * 22 17 16 41 41 H 1.08994 * 109.67072 * 171.96163 * 23 16 14 42 42 H 1.08999 * 109.67111 * 292.48973 * 23 16 14 43 43 H 1.09005 * 109.40400 * 169.02710 * 24 23 16 44 44 H 1.08996 * 109.40467 * 288.86063 * 24 23 16 45 45 H 0.96997 * 117.94477 * 182.22531 * 27 25 24 46 46 H 1.08992 * 109.30009 * 220.61228 * 28 27 25 47 47 H 1.09003 * 109.29673 * 101.23460 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4828 7 7 2.1381 -0.8592 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8725 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8471 2.1764 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1639 1.0947 -1.8463 16 6 3.1989 -0.7074 -3.3698 17 6 4.0991 -1.8773 -3.0672 18 6 3.8003 -3.1285 -3.5735 19 6 4.6283 -4.2009 -3.2990 20 6 5.7502 -4.0241 -2.5111 21 6 6.0464 -2.7739 -2.0009 22 6 5.2206 -1.7007 -2.2785 23 6 1.9489 -1.1980 -4.1104 24 6 0.9717 -0.0270 -4.2387 25 6 1.6901 1.1829 -4.7635 26 8 1.0283 2.0866 -5.2286 27 7 3.0168 1.3166 -4.7459 28 6 3.9350 0.2935 -4.2614 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9035 -0.5282 4.4375 33 1 0.7280 -2.1444 -1.9837 34 1 1.5474 -2.6013 -0.4710 35 1 2.4545 -2.5771 -2.0022 36 1 2.9220 -3.2674 -4.1863 37 1 4.3967 -5.1777 -3.6974 38 1 6.3953 -4.8626 -2.2940 39 1 6.9227 -2.6358 -1.3849 40 1 5.4518 -0.7241 -1.8795 41 1 2.2265 -1.5547 -5.1022 42 1 1.4819 -2.0057 -3.5469 43 1 0.1698 -0.2980 -4.9254 44 1 0.5489 0.2007 -3.2602 45 1 3.3945 2.1468 -5.0762 46 1 4.7326 0.7671 -3.6891 47 1 4.3692 -0.2327 -5.1115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565182958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:50 Heat of formation + Delta-G solvation = -22.785169 kcal Electronic energy + Delta-G solvation = -30603.891436 eV Core-core repulsion = 26752.331626 eV Total energy + Delta-G solvation = -3851.559811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54338 -39.29801 -38.54935 -36.28248 -35.60868 -33.79097 -32.46125 -31.78201 -30.91570 -30.28287 -28.46073 -26.46836 -25.21341 -24.89695 -24.03127 -22.39116 -21.99088 -21.10478 -19.52759 -17.99679 -17.73614 -16.83895 -16.62057 -16.31727 -15.98888 -15.71802 -15.65889 -14.77729 -14.70712 -14.57252 -14.34166 -13.84319 -13.74376 -13.45989 -13.38896 -13.26154 -12.84670 -12.77602 -12.41021 -12.32804 -12.21210 -11.94944 -11.78672 -11.56317 -11.50004 -11.23595 -11.18075 -10.92034 -10.80466 -10.75808 -10.18844 -9.69155 -9.67012 -9.45184 -9.25660 -9.03474 -8.91912 -8.66720 -8.55297 -7.79352 -6.18076 -4.18685 1.24452 1.37354 2.75190 3.03847 3.21057 3.34848 3.37287 3.37888 3.59038 3.72188 4.30266 4.32168 4.47491 4.50363 4.69741 4.85750 4.94207 4.95702 5.05555 5.15493 5.16972 5.26533 5.40502 5.45800 5.52289 5.57401 5.65213 5.70606 5.76368 5.84087 5.88219 5.89690 6.00323 6.19696 6.22947 6.34437 6.40856 6.44427 6.49746 6.52570 6.77630 6.81342 6.93222 7.05751 7.28069 7.38254 7.58086 8.09750 8.28855 8.41503 8.74593 8.84292 9.42952 10.94480 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.005945 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.779361 B = 4708.670826 C = 6468.298945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.230 3.770 3 H 0.061 0.939 4 C -0.526 4.526 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.881 3.119 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.575 5.575 13 C 0.062 3.938 14 C 0.519 3.481 15 O -0.541 6.541 16 C -0.053 4.053 17 C -0.068 4.068 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.141 4.141 25 C 0.525 3.475 26 O -0.565 6.565 27 N -0.707 5.707 28 C 0.140 3.860 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.266 0.734 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.401 0.599 46 H 0.088 0.912 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -7.717 -16.871 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.128 3.872 3 H 0.079 0.921 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.305 5.305 13 C -0.081 4.081 14 C 0.305 3.695 15 O -0.419 6.419 16 C -0.057 4.057 17 C -0.069 4.069 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.163 4.163 24 C -0.181 4.181 25 C 0.312 3.688 26 O -0.444 6.444 27 N -0.358 5.358 28 C 0.015 3.985 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.236 0.764 46 H 0.107 0.893 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.114 -6.872 -16.659 18.485 hybrid contribution -0.400 0.879 0.487 1.082 sum 3.714 -5.993 -16.172 17.642 Atomic orbital electron populations 1.22466 0.99055 1.01151 0.99273 1.19304 0.89889 0.95092 0.82923 0.92132 1.21118 1.32681 1.14211 0.88368 0.90253 1.24845 0.95622 0.96479 0.95657 1.69866 1.45137 1.40161 0.97971 0.86955 0.80509 0.83927 0.77517 1.20379 1.22116 1.18895 1.47726 1.48754 1.11573 1.22427 1.22182 0.99497 0.83147 1.03259 1.19864 0.79207 0.86234 0.84228 1.90682 1.54999 1.18941 1.77305 1.20085 0.95954 0.94631 0.95057 1.19207 0.95284 0.93243 0.99156 1.21079 0.99980 0.91951 1.00338 1.21089 0.95064 0.98608 0.98994 1.21181 0.97491 0.97204 0.97693 1.21149 0.99710 0.92724 0.99262 1.21102 0.94043 0.99819 0.96855 1.22138 0.93970 0.98826 1.01413 1.21710 0.99105 0.92870 1.04416 1.20044 0.82246 0.88846 0.77674 1.90731 1.64517 1.41904 1.47246 1.45217 1.06132 1.20179 1.64236 1.21165 0.91894 0.88794 0.96626 0.93106 0.94940 0.92458 0.92430 0.93626 0.89746 0.90719 0.85352 0.85945 0.86128 0.85853 0.85711 0.89882 0.88196 0.87665 0.87790 0.76403 0.89330 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.67 37.16 0.32 -3.09 16 2 C 0.23 5.38 2.22 -69.08 -0.15 5.22 16 3 H 0.06 1.61 5.97 -51.93 -0.31 1.30 16 4 C -0.53 -14.16 8.58 -34.44 -0.30 -14.46 16 5 H 0.08 2.31 7.56 -52.48 -0.40 1.91 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 8 Si 0.88 21.81 24.37 -169.99 -4.14 17.67 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.58 -11.05 2.64 -175.27 -0.46 -11.51 16 13 C 0.06 0.97 7.65 59.84 0.46 1.42 16 14 C 0.52 9.47 4.05 -10.99 -0.04 9.42 16 15 O -0.54 -11.93 14.93 5.55 0.08 -11.85 16 16 C -0.05 -0.70 0.35 -156.68 -0.05 -0.75 16 17 C -0.07 -0.82 3.13 -104.63 -0.33 -1.15 16 18 C -0.12 -1.13 7.35 -39.58 -0.29 -1.42 16 19 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 20 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16 21 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 22 C -0.10 -1.33 9.02 -39.58 -0.36 -1.68 16 23 C -0.13 -1.34 3.17 -26.52 -0.08 -1.43 16 24 C -0.14 -1.84 5.50 -28.10 -0.15 -2.00 16 25 C 0.52 8.23 7.44 -11.87 -0.09 8.14 16 26 O -0.56 -10.89 17.78 5.55 0.10 -10.79 16 27 N -0.71 -9.51 5.11 -61.39 -0.31 -9.83 16 28 C 0.14 1.67 5.23 -4.48 -0.02 1.64 16 29 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 33 H 0.05 0.59 6.95 -51.93 -0.36 0.23 16 34 H 0.08 1.50 7.00 -51.93 -0.36 1.13 16 35 H 0.07 1.00 2.97 -51.93 -0.15 0.85 16 36 H 0.13 0.97 5.98 -52.49 -0.31 0.66 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.83 7.86 -52.49 -0.41 1.42 16 41 H 0.08 0.68 7.68 -51.93 -0.40 0.28 16 42 H 0.10 0.97 3.94 -51.93 -0.20 0.77 16 43 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.10 1.58 7.34 -51.93 -0.38 1.20 16 45 H 0.40 4.96 8.80 -40.82 -0.36 4.60 16 46 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 47 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -34.68 354.87 -7.34 -42.02 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.34 Total: 7.57 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.39 Total: -2.85 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.00 Total: -47.11 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.18 Total: -22.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.68 -7.34 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565182958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.234 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds